RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 NCKAP1LP55160 1127 aa11.23□□□□□ -0.61
SCN1A-222ENST00000642141 MCL1Q07820 350 aa11.23□□□□□ -0.61
SCN1A-222ENST00000642141 RESTQ13127 1097 aa11.23□□□□□ -0.61
SCN1A-222ENST00000642141 RAB33AQ14088 237 aa11.23□□□□□ -0.61
SCN1A-222ENST00000642141 PTPAQ15257 358 aa11.23□□□□□ -0.61
SCN1A-222ENST00000642141 VARS2Q5ST30 1063 aaKnown RBP11.23□□□□□ -0.61
SCN1A-222ENST00000642141 ZPBP2Q6X784 338 aa11.23□□□□□ -0.61
SCN1A-222ENST00000642141 GPR65Q8IYL9 337 aa11.23□□□□□ -0.61
SCN1A-222ENST00000642141 SIX5Q8N196 739 aa11.23□□□□□ -0.61
SCN1A-222ENST00000642141 SLC44A3Q8N4M1 653 aa11.23□□□□□ -0.61
SCN1A-222ENST00000642141 TMEM105Q8N8V8 129 aa11.23□□□□□ -0.61
SCN1A-222ENST00000642141 ITFG1Q8TB96 612 aa11.23□□□□□ -0.61
SCN1A-222ENST00000642141 ING5Q8WYH8 240 aa11.23□□□□□ -0.61
SCN1A-222ENST00000642141 KIF12Q96FN5 646 aa11.23□□□□□ -0.61
SCN1A-222ENST00000642141 RPP25Q9BUL9 199 aaKnown RBP11.23□□□□□ -0.61
SCN1A-222ENST00000642141 PARVGQ9HBI0 331 aa11.23□□□□□ -0.61
SCN1A-222ENST00000642141 KCND2Q9NZV8 630 aa11.23□□□□□ -0.61
SCN1A-222ENST00000642141 TBC1D7Q9P0N9 293 aa11.23□□□□□ -0.61
SCN1A-222ENST00000642141 CNTN3Q9P232 1028 aa11.23□□□□□ -0.61
SCN1A-222ENST00000642141 MTRRQ9UBK8 725 aa11.23□□□□□ -0.61
SCN1A-222ENST00000642141 KCNG1Q9UIX4 513 aa11.23□□□□□ -0.61
SCN1A-222ENST00000642141 FBXO2Q9UK22 296 aaPredicted RBP11.23□□□□□ -0.61
SCN1A-222ENST00000642141 TIMM13Q9Y5L4 95 aaPredicted RBP11.23□□□□□ -0.61
SCN1A-222ENST00000642141 ANKRD63C9JTQ0 380 aa11.22□□□□□ -0.61
SCN1A-222ENST00000642141 PRRG1O14668 218 aa11.22□□□□□ -0.61
SCN1A-222ENST00000642141 PI15O43692 258 aa11.22□□□□□ -0.61
SCN1A-222ENST00000642141 CLTAP09496 248 aa11.22□□□□□ -0.61
SCN1A-222ENST00000642141 RPL9P32969 192 aaKnown RBP11.22□□□□□ -0.61
SCN1A-222ENST00000642141 MCM4P33991 863 aa11.22□□□□□ -0.61
SCN1A-222ENST00000642141 DDIT3P35638 169 aa11.22□□□□□ -0.61
SCN1A-222ENST00000642141 TCF15Q12870 199 aa11.22□□□□□ -0.61
SCN1A-222ENST00000642141 ENOX2Q16206 610 aaKnown RBP11.22□□□□□ -0.61
SCN1A-222ENST00000642141 FOXD4L6Q3SYB3 417 aaPredicted RBP11.22□□□□□ -0.61
SCN1A-222ENST00000642141 PDXDC1Q6P996 788 aa11.22□□□□□ -0.61
SCN1A-222ENST00000642141 CYP26C1Q6V0L0 522 aa11.22□□□□□ -0.61
SCN1A-222ENST00000642141 FOXD4L3Q6VB84 417 aaPredicted RBP11.22□□□□□ -0.61
SCN1A-222ENST00000642141 ANKS3Q6ZW76 656 aa11.22□□□□□ -0.61
SCN1A-222ENST00000642141 KCTD17Q8N5Z5 321 aa11.22□□□□□ -0.61
SCN1A-222ENST00000642141 LARP4BQ92615 738 aaKnown RBP11.22□□□□□ -0.61
SCN1A-222ENST00000642141 MSTO1Q9BUK6 570 aa11.22□□□□□ -0.61
SCN1A-222ENST00000642141 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.22□□□□□ -0.61
SCN1A-222ENST00000642141 TFIP11Q9UBB9 837 aaKnown RBP11.22□□□□□ -0.61
SCN1A-222ENST00000642141 EPS15L1Q9UBC2 864 aa11.22□□□□□ -0.61
SCN1A-222ENST00000642141 ODF2LQ9ULJ1 636 aa11.22□□□□□ -0.61
SCN1A-222ENST00000642141 CA14Q9ULX7 337 aa11.22□□□□□ -0.61
SCN1A-222ENST00000642141 MTMR6Q9Y217 621 aa11.22□□□□□ -0.61
SCN1A-222ENST00000642141 TRIP11Q15643 1979 aa11.21□□□□□ -0.61
SCN1A-222ENST00000642141 TTC26A0AVF1 554 aa11.21□□□□□ -0.61
SCN1A-222ENST00000642141 H0YCG3 227 aa11.21□□□□□ -0.61
SCN1A-222ENST00000642141 PPEF2O14830 753 aa11.21□□□□□ -0.61
SCN1A-222ENST00000642141 XYLBO75191 536 aa11.21□□□□□ -0.61
SCN1A-222ENST00000642141 SEC24AO95486 1093 aa11.21□□□□□ -0.61
SCN1A-222ENST00000642141 NPR3P17342 541 aa11.21□□□□□ -0.61
SCN1A-222ENST00000642141 ELF1P32519 619 aa11.21□□□□□ -0.61
SCN1A-222ENST00000642141 ACOT2P49753 483 aa11.21□□□□□ -0.61
SCN1A-222ENST00000642141 PTPN5P54829 565 aa11.21□□□□□ -0.61
SCN1A-222ENST00000642141 ROR1Q01973 937 aa11.21□□□□□ -0.61
SCN1A-222ENST00000642141 CTXN3Q4LDR2 81 aa11.21□□□□□ -0.61
SCN1A-222ENST00000642141 RRAGBQ5VZM2 374 aa11.21□□□□□ -0.61
SCN1A-222ENST00000642141 ASTLQ6HA08 431 aaPredicted RBP11.21□□□□□ -0.61
SCN1A-222ENST00000642141 SLC39A4Q6P5W5 647 aa11.21□□□□□ -0.61
SCN1A-222ENST00000642141 PARM1Q6UWI2 310 aa11.21□□□□□ -0.61
SCN1A-222ENST00000642141 SFR1Q86XK3 245 aa11.21□□□□□ -0.61
SCN1A-222ENST00000642141 KRI1Q8N9T8 703 aaKnown RBP11.21□□□□□ -0.61
SCN1A-222ENST00000642141 SPRYD3Q8NCJ5 442 aa11.21□□□□□ -0.61
SCN1A-222ENST00000642141 ATOH1Q92858 354 aaPredicted RBP11.21□□□□□ -0.61
SCN1A-222ENST00000642141 FGF13Q92913 245 aa11.21□□□□□ -0.61
SCN1A-222ENST00000642141 USP28Q96RU2 1077 aa11.21□□□□□ -0.61
SCN1A-222ENST00000642141 CCSER1Q9C0I3 900 aa11.21□□□□□ -0.61
SCN1A-222ENST00000642141 KCNH6Q9H252 994 aa11.21□□□□□ -0.61
SCN1A-222ENST00000642141 RPF1Q9H9Y2 349 aaKnown RBP11.21□□□□□ -0.61
SCN1A-222ENST00000642141 CYP4F11Q9HBI6 524 aa11.21□□□□□ -0.61
SCN1A-222ENST00000642141 IGSF9Q9P2J2 1179 aa11.21□□□□□ -0.61
SCN1A-222ENST00000642141 DNMT3BQ9UBC3 853 aaKnown RBP11.21□□□□□ -0.61
SCN1A-222ENST00000642141 FBXL5Q9UKA1 691 aa11.21□□□□□ -0.61
SCN1A-222ENST00000642141 DUSP12Q9UNI6 340 aa11.21□□□□□ -0.61
SCN1A-222ENST00000642141 BACE2Q9Y5Z0 518 aa11.21□□□□□ -0.61
SCN1A-222ENST00000642141 NUMBLQ9Y6R0 609 aa11.21□□□□□ -0.61
SCN1A-222ENST00000642141 VWA8A3KMH1 1905 aa11.21□□□□□ -0.62
SCN1A-222ENST00000642141 DENND4AQ7Z401 1863 aa11.21□□□□□ -0.62
SCN1A-222ENST00000642141 ZNF318Q5VUA4 2279 aa11.2□□□□□ -0.62
SCN1A-222ENST00000642141 A0A0B4J269 797 aa11.2□□□□□ -0.62
SCN1A-222ENST00000642141 WDR27A2RRH5 827 aa11.2□□□□□ -0.62
SCN1A-222ENST00000642141 KRBA1A5PL33 1030 aa11.2□□□□□ -0.62
SCN1A-222ENST00000642141 MYMKA6NI61 221 aa11.2□□□□□ -0.62
SCN1A-222ENST00000642141 H7C4K7 107 aa11.2□□□□□ -0.62
SCN1A-222ENST00000642141 K7ELQ4 463 aaPredicted RBP11.2□□□□□ -0.62
SCN1A-222ENST00000642141 OGTO15294 1046 aa11.2□□□□□ -0.62
SCN1A-222ENST00000642141 SLC26A4O43511 780 aa11.2□□□□□ -0.62
SCN1A-222ENST00000642141 C1RP00736 705 aa11.2□□□□□ -0.62
SCN1A-222ENST00000642141 HNRNPA1P09651 372 aaKnown RBP eCLIP11.2□□□□□ -0.62
SCN1A-222ENST00000642141 RFX1P22670 979 aa11.2□□□□□ -0.62
SCN1A-222ENST00000642141 ZNF131P52739 623 aa11.2□□□□□ -0.62
SCN1A-222ENST00000642141 PPP2R3AQ06190 1150 aa11.2□□□□□ -0.62
SCN1A-222ENST00000642141 HTR4Q13639 388 aa11.2□□□□□ -0.62
SCN1A-222ENST00000642141 PABPC1LQ4VXU2 614 aaKnown RBP11.2□□□□□ -0.62
SCN1A-222ENST00000642141 JADE1Q6IE81 842 aa11.2□□□□□ -0.62
SCN1A-222ENST00000642141 PDILTQ8N807 584 aa11.2□□□□□ -0.62
SCN1A-222ENST00000642141 ZNF461Q8TAF7 563 aa11.2□□□□□ -0.62
SCN1A-222ENST00000642141 GPR152Q8TDT2 470 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms