RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 SUN2Q9UH99 717 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 CLASP1Q7Z460 1538 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 ARHGAP31Q2M1Z3 1444 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 CFAP99D6REC4 459 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 H7C4K7 107 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 NCK2O43639 380 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 FAM200BP0CF97 657 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 SLC2A4P14672 509 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 TNFAIP3P21580 790 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 PMLP29590 882 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 HUNKP57058 714 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 RESTQ13127 1097 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 RPS6KA1Q15418 735 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 DCAF17Q5H9S7 520 aaPredicted RBP2.92□□□□□ -1.94
SCN1A-219ENST00000641575 C9orf131Q5VYM1 1079 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 CCDC80Q76M96 950 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 ATP8B4Q8TF62 1192 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 NAF1Q96HR8 494 aaKnown RBP2.92□□□□□ -1.94
SCN1A-219ENST00000641575 CATSPER2Q96P56 530 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 ANO3Q9BYT9 981 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 PHACTR1Q9C0D0 580 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 NDST4Q9H3R1 872 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 PPCSQ9HAB8 311 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 SLC28A3Q9HAS3 691 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 RAB9BQ9NP90 201 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 NLRC4Q9NPP4 1024 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 ERAP1Q9NZ08 941 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 NCDNQ9UBB6 729 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 SAP30BPQ9UHR5 308 aaKnown RBP2.92□□□□□ -1.94
SCN1A-219ENST00000641575 NR2E1Q9Y466 385 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 UBN2Q6ZU65 1347 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 KDM5AP29375 1690 aaKnown RBP2.92□□□□□ -1.94
SCN1A-219ENST00000641575 KCNH1O95259 989 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 KCNA2P16389 499 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 SERPINB3P29508 390 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 PRKAR2BP31323 418 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 GPD2P43304 727 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 METAP2P50579 478 aaKnown RBP eCLIP2.92□□□□□ -1.94
SCN1A-219ENST00000641575 RAD23AP54725 363 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 MRPS35P82673 323 aaKnown RBP2.92□□□□□ -1.94
SCN1A-219ENST00000641575 KRT76Q01546 638 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 CNGA3Q16281 694 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 SPATA1Q5VX52 437 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 RAPH1Q70E73 1250 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 DDX53Q86TM3 631 aaKnown RBP2.92□□□□□ -1.94
SCN1A-219ENST00000641575 TNIP2Q8NFZ5 429 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 LRRC39Q96DD0 335 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 PPP1R16AQ96I34 528 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 SLC38A7Q9NVC3 462 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 RSL24D1Q9UHA3 163 aaKnown RBP2.92□□□□□ -1.94
SCN1A-219ENST00000641575 ZNF148Q9UQR1 794 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 PRRC2AP48634 2157 aaKnown RBP2.92□□□□□ -1.94
SCN1A-219ENST00000641575 IFRD1O00458 451 aaPredicted RBP2.92□□□□□ -1.94
SCN1A-219ENST00000641575 KRIT1O00522 736 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 ARHGAP6O43182 974 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 RRM1P23921 792 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 HSPA9P38646 679 aaKnown RBP2.92□□□□□ -1.94
SCN1A-219ENST00000641575 GJA8P48165 433 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 FNTAP49354 379 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 GIT2Q14161 759 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 LONRF3Q496Y0 759 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 TBCELQ5QJ74 424 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 MYLK4Q86YV6 388 aaPredicted RBP2.92□□□□□ -1.94
SCN1A-219ENST00000641575 RASSF5Q8WWW0 418 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 SNX25Q9H3E2 840 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 LNPEPQ9UIQ6 1025 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 MAPK8IP1Q9UQF2 711 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 ANKRD6Q9Y2G4 727 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 NEURL4Q96JN8 1562 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 C5orf58C9J3I9 102 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 TRIM13O60858 407 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 PDE5AO76074 875 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 SCRN3Q0VDG4 424 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 DUOXA2Q1HG44 320 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 PKN3Q6P5Z2 889 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 CYFIP1Q7L576 1253 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 CDR2LQ86X02 465 aaPredicted RBP2.92□□□□□ -1.94
SCN1A-219ENST00000641575 AVL9Q8NBF6 648 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 RMDN1Q96DB5 314 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 AGPAT1Q99943 283 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 TINF2Q9BSI4 451 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 UNKQ9C0B0 810 aaKnown RBP2.92□□□□□ -1.94
SCN1A-219ENST00000641575 FHDC1Q9C0D6 1143 aaPredicted RBP2.92□□□□□ -1.94
SCN1A-219ENST00000641575 SMYD3Q9H7B4 428 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 ZMYM5Q9UJ78 669 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 SNX6Q9UNH7 406 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 WBP11Q9Y2W2 641 aaKnown RBP2.92□□□□□ -1.94
SCN1A-219ENST00000641575 MALRD1Q5VYJ5 2156 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 CCT8L1PA6NM43 557 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 USP17L12C9JPN9 530 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 USP17L21D6R901 530 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 STX7O15400 261 aaKnown RBP2.92□□□□□ -1.94
SCN1A-219ENST00000641575 CAPN15O75808 1086 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 STAM2O75886 525 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 PTPN3P26045 913 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 ETFBP38117 255 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 HSPA13P48723 471 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 RIDAP52758 137 aaKnown RBP2.92□□□□□ -1.94
SCN1A-219ENST00000641575 KRT81Q14533 505 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 SFMBT2Q5VUG0 894 aa2.92□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms