RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 AKAP14Q86UN6 197 aa6.04□□□□□ -1.44
SCN1A-216ENST00000637968 CAND1Q86VP6 1230 aaKnown RBP6.04□□□□□ -1.44
SCN1A-216ENST00000637968 GRAMD1CQ8IYS0 662 aa6.04□□□□□ -1.44
SCN1A-216ENST00000637968 NPLOC4Q8TAT6 608 aa6.04□□□□□ -1.44
SCN1A-216ENST00000637968 NRBF2Q96F24 287 aa6.04□□□□□ -1.44
SCN1A-216ENST00000637968 WNK4Q96J92 1243 aa6.04□□□□□ -1.44
SCN1A-216ENST00000637968 DEPDC7Q96QD5 511 aa6.04□□□□□ -1.44
SCN1A-216ENST00000637968 ADNPQ9H2P0 1102 aa6.04□□□□□ -1.44
SCN1A-216ENST00000637968 PLK2Q9NYY3 685 aa6.04□□□□□ -1.44
SCN1A-216ENST00000637968 SLAIN2Q9P270 581 aa6.04□□□□□ -1.44
SCN1A-216ENST00000637968 DCTN4Q9UJW0 460 aa6.04□□□□□ -1.44
SCN1A-216ENST00000637968 APPL1Q9UKG1 709 aa6.04□□□□□ -1.44
SCN1A-216ENST00000637968 KIAA1257Q9ULG3 409 aa6.04□□□□□ -1.44
SCN1A-216ENST00000637968 PHTF1Q9UMS5 762 aa6.04□□□□□ -1.44
SCN1A-216ENST00000637968 SLC8A2Q9UPR5 921 aa6.04□□□□□ -1.44
SCN1A-216ENST00000637968 DUSP10Q9Y6W6 482 aa6.04□□□□□ -1.44
SCN1A-216ENST00000637968 ACEP12821 1306 aa6.04□□□□□ -1.44
SCN1A-216ENST00000637968 ILVBLA1L0T0 632 aa6.04□□□□□ -1.44
SCN1A-216ENST00000637968 DCDC2CA8MYV0 355 aa6.04□□□□□ -1.44
SCN1A-216ENST00000637968 B2RBV5 119 aa6.04□□□□□ -1.44
SCN1A-216ENST00000637968 POTECB2RU33 542 aa6.04□□□□□ -1.44
SCN1A-216ENST00000637968 THAP12O43422 761 aa6.04□□□□□ -1.44
SCN1A-216ENST00000637968 CES1P23141 567 aa6.04□□□□□ -1.44
SCN1A-216ENST00000637968 NCKAP1LP55160 1127 aa6.04□□□□□ -1.44
SCN1A-216ENST00000637968 IFI35P80217 286 aaPredicted RBP6.04□□□□□ -1.44
SCN1A-216ENST00000637968 SSRP1Q08945 709 aaKnown RBP6.04□□□□□ -1.44
SCN1A-216ENST00000637968 CDC16Q13042 620 aa6.04□□□□□ -1.44
SCN1A-216ENST00000637968 SLC29A2Q14542 456 aa6.04□□□□□ -1.44
SCN1A-216ENST00000637968 TIGD2Q4W5G0 525 aa6.04□□□□□ -1.44
SCN1A-216ENST00000637968 TMC7Q7Z402 723 aa6.04□□□□□ -1.44
SCN1A-216ENST00000637968 SRRM1Q8IYB3 904 aaKnown RBP6.04□□□□□ -1.44
SCN1A-216ENST00000637968 GDPD5Q8WTR4 605 aa6.04□□□□□ -1.44
SCN1A-216ENST00000637968 ESR2Q92731 530 aa6.04□□□□□ -1.44
SCN1A-216ENST00000637968 PLEKHA8Q96JA3 519 aa6.04□□□□□ -1.44
SCN1A-216ENST00000637968 CEP19Q96LK0 163 aa6.04□□□□□ -1.44
SCN1A-216ENST00000637968 TCF12Q99081 682 aa6.04□□□□□ -1.44
SCN1A-216ENST00000637968 THTPAQ9BU02 230 aa6.04□□□□□ -1.44
SCN1A-216ENST00000637968 TXNDC16Q9P2K2 825 aa6.04□□□□□ -1.44
SCN1A-216ENST00000637968 ARMCX3Q9UH62 379 aaPredicted RBP6.04□□□□□ -1.44
SCN1A-216ENST00000637968 AMACRQ9UHK6 382 aa6.04□□□□□ -1.44
SCN1A-216ENST00000637968 HPS5Q9UPZ3 1129 aa6.04□□□□□ -1.44
SCN1A-216ENST00000637968 RWDD3Q9Y3V2 267 aa6.04□□□□□ -1.44
SCN1A-216ENST00000637968 ATP10DQ9P241 1426 aa6.04□□□□□ -1.44
SCN1A-216ENST00000637968 SMCO2A6NFE2 343 aa6.04□□□□□ -1.44
SCN1A-216ENST00000637968 K7EPI3 171 aa6.04□□□□□ -1.44
SCN1A-216ENST00000637968 TRIM16O95361 564 aa6.04□□□□□ -1.44
SCN1A-216ENST00000637968 SRGAP2CP0DJJ0 459 aa6.04□□□□□ -1.44
SCN1A-216ENST00000637968 SRGAP2BP0DMP2 458 aa6.04□□□□□ -1.44
SCN1A-216ENST00000637968 ADSLP30566 484 aaPredicted RBP6.04□□□□□ -1.44
SCN1A-216ENST00000637968 HOXD13P35453 343 aa6.04□□□□□ -1.44
SCN1A-216ENST00000637968 UBA7P41226 1012 aa6.04□□□□□ -1.44
SCN1A-216ENST00000637968 METAP2P50579 478 aaKnown RBP eCLIP6.04□□□□□ -1.44
SCN1A-216ENST00000637968 EFTUD2Q15029 972 aaKnown RBP eCLIP6.04□□□□□ -1.44
SCN1A-216ENST00000637968 KCNJ8Q15842 424 aa6.04□□□□□ -1.44
SCN1A-216ENST00000637968 ZNF362Q5T0B9 420 aaPredicted RBP6.04□□□□□ -1.44
SCN1A-216ENST00000637968 KRT40Q6A162 431 aa6.04□□□□□ -1.44
SCN1A-216ENST00000637968 ITPRIPL1Q6GPH6 555 aa6.04□□□□□ -1.44
SCN1A-216ENST00000637968 POTEHQ6S545 545 aa6.04□□□□□ -1.44
SCN1A-216ENST00000637968 CYB5R4Q7L1T6 521 aa6.04□□□□□ -1.44
SCN1A-216ENST00000637968 KRT26Q7Z3Y9 468 aa6.04□□□□□ -1.44
SCN1A-216ENST00000637968 CATSPER3Q86XQ3 398 aa6.04□□□□□ -1.44
SCN1A-216ENST00000637968 ECHDC2Q86YB7 292 aa6.04□□□□□ -1.44
SCN1A-216ENST00000637968 SMYD4Q8IYR2 804 aaPredicted RBP6.04□□□□□ -1.44
SCN1A-216ENST00000637968 PI4K2BQ8TCG2 481 aa6.04□□□□□ -1.44
SCN1A-216ENST00000637968 OSBPL8Q9BZF1 889 aa6.04□□□□□ -1.44
SCN1A-216ENST00000637968 TRPV6Q9H1D0 765 aa6.04□□□□□ -1.44
SCN1A-216ENST00000637968 EBF3Q9H4W6 596 aa6.04□□□□□ -1.44
SCN1A-216ENST00000637968 VPS4AQ9UN37 437 aa6.04□□□□□ -1.44
SCN1A-216ENST00000637968 PCDH11XQ9BZA7 1347 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 C1orf232A0A0U1RR37 186 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 FAM170AA1A519 330 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 FAM187AA6NFU0 413 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 TNPO2O14787 897 aaKnown RBP6.03□□□□□ -1.44
SCN1A-216ENST00000637968 FOXN1O15353 648 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 GAS7O60861 476 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 ARHGEF15O94989 841 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 COL6A2P12110 1019 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 PTPN2P17706 415 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 HNRNPFP52597 415 aaKnown RBP6.03□□□□□ -1.44
SCN1A-216ENST00000637968 LETM2Q2VYF4 491 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 KLHL38Q2WGJ6 581 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 ACSBG2Q5FVE4 666 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 RC3H1Q5TC82 1133 aaKnown RBP6.03□□□□□ -1.44
SCN1A-216ENST00000637968 ZNF598Q86UK7 904 aaKnown RBP6.03□□□□□ -1.44
SCN1A-216ENST00000637968 HORMAD1Q86X24 394 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 HIPK4Q8NE63 616 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 GRPEL2Q8TAA5 225 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 ERLEC1Q96DZ1 483 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 RILPQ96NA2 401 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 TUBGCP2Q9BSJ2 902 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 CALN1Q9BXU9 219 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 ZHX3Q9H4I2 956 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 SMYD3Q9H7B4 428 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 FAM207AQ9NSI2 230 aaPredicted RBP6.03□□□□□ -1.44
SCN1A-216ENST00000637968 SYBUQ9NX95 663 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 VPS51Q9UID3 782 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 AMFRQ9UKV5 643 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 SNX24Q9Y343 169 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 ADGRA3Q8IWK6 1321 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 PLEKHG3A1L390 1219 aa6.03□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms