RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, human

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PDLIM5-223	ENST00000627587	RUFY4	Q6ZNE9	571 aa		10.28	□□□□□ -0.76
PDLIM5-223	ENST00000627587	C15orf39	Q6ZRI6	1047 aa		10.28	□□□□□ -0.76
PDLIM5-223	ENST00000627587	RRAGA	Q7L523	313 aa		10.28	□□□□□ -0.76
PDLIM5-223	ENST00000627587	ACRBP	Q8NEB7	543 aa		10.28	□□□□□ -0.76
PDLIM5-223	ENST00000627587	TMC2	Q8TDI7	906 aa		10.28	□□□□□ -0.76
PDLIM5-223	ENST00000627587	C16orf45	Q96MC5	204 aa	Predicted RBP	10.28	□□□□□ -0.76
PDLIM5-223	ENST00000627587	SAMD11	Q96NU1	681 aa		10.28	□□□□□ -0.76
PDLIM5-223	ENST00000627587	NECAB3	Q96P71	396 aa	Predicted RBP	10.28	□□□□□ -0.76
PDLIM5-223	ENST00000627587	MAP7D2	Q96T17	732 aa		10.28	□□□□□ -0.76
PDLIM5-223	ENST00000627587	PPP1R16B	Q96T49	567 aa		10.28	□□□□□ -0.76
PDLIM5-223	ENST00000627587	FDXACB1	Q9BRP7	624 aa	Predicted RBP	10.28	□□□□□ -0.76
PDLIM5-223	ENST00000627587	MRPL4	Q9BYD3	311 aa	Known RBP	10.28	□□□□□ -0.76
PDLIM5-223	ENST00000627587	GPR88	Q9GZN0	384 aa		10.28	□□□□□ -0.76
PDLIM5-223	ENST00000627587	ANKFY1	Q9P2R3	1169 aa		10.28	□□□□□ -0.76
PDLIM5-223	ENST00000627587	HDAC6	Q9UBN7	1215 aa		10.28	□□□□□ -0.76
PDLIM5-223	ENST00000627587	FBXL5	Q9UKA1	691 aa		10.28	□□□□□ -0.76
PDLIM5-223	ENST00000627587	AGO2	Q9UKV8	859 aa	Known RBP	10.28	□□□□□ -0.76
PDLIM5-223	ENST00000627587	AKT3	Q9Y243	479 aa		10.28	□□□□□ -0.76
PDLIM5-223	ENST00000627587	HCN4	Q9Y3Q4	1203 aa		10.28	□□□□□ -0.76
PDLIM5-223	ENST00000627587	INSL6	Q9Y581	213 aa		10.28	□□□□□ -0.76
PDLIM5-223	ENST00000627587	NRCAM	Q92823	1304 aa		10.28	□□□□□ -0.76
PDLIM5-223	ENST00000627587	CNTNAP2	Q9UHC6	1331 aa		10.28	□□□□□ -0.76
PDLIM5-223	ENST00000627587	ACKR2	O00590	384 aa		10.27	□□□□□ -0.76
PDLIM5-223	ENST00000627587	ZNF263	O14978	683 aa		10.27	□□□□□ -0.76
PDLIM5-223	ENST00000627587	GPR37L1	O60883	481 aa		10.27	□□□□□ -0.76
PDLIM5-223	ENST00000627587	TOM1L1	O75674	476 aa		10.27	□□□□□ -0.76
PDLIM5-223	ENST00000627587	LDHA	P00338	332 aa	Known RBP	10.27	□□□□□ -0.76
PDLIM5-223	ENST00000627587	ABL1	P00519	1130 aa		10.27	□□□□□ -0.76
PDLIM5-223	ENST00000627587	TNFSF9	P41273	254 aa		10.27	□□□□□ -0.76
PDLIM5-223	ENST00000627587	MATR3	P43243	847 aa	Known RBP eCLIP	10.27	□□□□□ -0.76	1e-6	■■■□□ 17.1
PDLIM5-223	ENST00000627587	PHKA2	P46019	1235 aa		10.27	□□□□□ -0.76
PDLIM5-223	ENST00000627587	ZNF200	P98182	395 aa	Predicted RBP	10.27	□□□□□ -0.76
PDLIM5-223	ENST00000627587	ENPEP	Q07075	957 aa		10.27	□□□□□ -0.76
PDLIM5-223	ENST00000627587	MCL1	Q07820	350 aa		10.27	□□□□□ -0.76
PDLIM5-223	ENST00000627587	CETN1	Q12798	172 aa		10.27	□□□□□ -0.76
PDLIM5-223	ENST00000627587	FAM187B	Q17R55	369 aa		10.27	□□□□□ -0.76
PDLIM5-223	ENST00000627587	ASTE1	Q2TB18	679 aa	Predicted RBP	10.27	□□□□□ -0.76
PDLIM5-223	ENST00000627587	PUS10	Q3MIT2	529 aa	Known RBP	10.27	□□□□□ -0.76
PDLIM5-223	ENST00000627587	EEF1DP3	Q658K8	133 aa		10.27	□□□□□ -0.76
PDLIM5-223	ENST00000627587	SCARA3	Q6AZY7	606 aa		10.27	□□□□□ -0.76
PDLIM5-223	ENST00000627587	IQCE	Q6IPM2	695 aa		10.27	□□□□□ -0.76
PDLIM5-223	ENST00000627587	PHLDB3	Q6NSJ2	640 aa		10.27	□□□□□ -0.76
PDLIM5-223	ENST00000627587	TSHZ1	Q6ZSZ6	1077 aa		10.27	□□□□□ -0.76
PDLIM5-223	ENST00000627587	OLIG1	Q8TAK6	271 aa		10.27	□□□□□ -0.76
PDLIM5-223	ENST00000627587	DHX38	Q92620	1227 aa	Known RBP	10.27	□□□□□ -0.76
PDLIM5-223	ENST00000627587	SEMA4D	Q92854	862 aa		10.27	□□□□□ -0.76
PDLIM5-223	ENST00000627587	CCDC127	Q96BQ5	260 aa		10.27	□□□□□ -0.76
PDLIM5-223	ENST00000627587	INTS2	Q9H0H0	1204 aa	Known RBP	10.27	□□□□□ -0.76
PDLIM5-223	ENST00000627587	NUCKS1	Q9H1E3	243 aa	Known RBP	10.27	□□□□□ -0.76
PDLIM5-223	ENST00000627587	ADAMTS10	Q9H324	1103 aa		10.27	□□□□□ -0.76
PDLIM5-223	ENST00000627587	COQ4	Q9Y3A0	265 aa		10.27	□□□□□ -0.76
PDLIM5-223	ENST00000627587	TRANK1	O15050	2925 aa		10.27	□□□□□ -0.77
PDLIM5-223	ENST00000627587	PDCD11	Q14690	1871 aa	Known RBP	10.27	□□□□□ -0.77
PDLIM5-223	ENST00000627587	RALGAPA2	Q2PPJ7	1873 aa		10.27	□□□□□ -0.77
PDLIM5-223	ENST00000627587	PPAN-P2RY11	A0A0B4J1V8	794 aa	Predicted RBP	10.27	□□□□□ -0.77
PDLIM5-223	ENST00000627587	ZNF233	A6NK53	670 aa		10.27	□□□□□ -0.77
PDLIM5-223	ENST00000627587	INO80B-WBP1	J3KQ70	363 aa		10.27	□□□□□ -0.77
PDLIM5-223	ENST00000627587	P4HA2	O15460	535 aa		10.27	□□□□□ -0.77
PDLIM5-223	ENST00000627587	MEFV	O15553	781 aa	Predicted RBP	10.27	□□□□□ -0.77
PDLIM5-223	ENST00000627587	ZSCAN12	O43309	604 aa		10.27	□□□□□ -0.77
PDLIM5-223	ENST00000627587	NBN	O60934	754 aa		10.27	□□□□□ -0.77
PDLIM5-223	ENST00000627587	GPR32	O75388	356 aa		10.27	□□□□□ -0.77
PDLIM5-223	ENST00000627587	OFD1	O75665	1012 aa		10.27	□□□□□ -0.77
PDLIM5-223	ENST00000627587	NDUFA10	O95299	355 aa		10.27	□□□□□ -0.77
PDLIM5-223	ENST00000627587	AMH	P03971	560 aa		10.27	□□□□□ -0.77
PDLIM5-223	ENST00000627587	PNMA6A	P0CW24	399 aa	Predicted RBP	10.27	□□□□□ -0.77
PDLIM5-223	ENST00000627587	PSMD6	Q15008	389 aa		10.27	□□□□□ -0.77
PDLIM5-223	ENST00000627587	IRF2BP2	Q7Z5L9	587 aa		10.27	□□□□□ -0.77
PDLIM5-223	ENST00000627587	CDR2L	Q86X02	465 aa	Predicted RBP	10.27	□□□□□ -0.77
PDLIM5-223	ENST00000627587	CEP120	Q8N960	986 aa		10.27	□□□□□ -0.77
PDLIM5-223	ENST00000627587	SYN2	Q92777	582 aa	Predicted RBP	10.27	□□□□□ -0.77
PDLIM5-223	ENST00000627587	LRFN3	Q9BTN0	628 aa		10.27	□□□□□ -0.77
PDLIM5-223	ENST00000627587	MSTO1	Q9BUK6	570 aa		10.27	□□□□□ -0.77
PDLIM5-223	ENST00000627587	INO80B	Q9C086	356 aa	Predicted RBP	10.27	□□□□□ -0.77
PDLIM5-223	ENST00000627587	NHEJ1	Q9H9Q4	299 aa	Predicted RBP	10.27	□□□□□ -0.77
PDLIM5-223	ENST00000627587	CDHR5	Q9HBB8	845 aa		10.27	□□□□□ -0.77
PDLIM5-223	ENST00000627587	AIPL1	Q9NZN9	384 aa		10.27	□□□□□ -0.77
PDLIM5-223	ENST00000627587	EPN1	Q9Y6I3	576 aa	Predicted RBP	10.27	□□□□□ -0.77
PDLIM5-223	ENST00000627587	TET1	Q8NFU7	2136 aa		10.27	□□□□□ -0.77
PDLIM5-223	ENST00000627587	CLDN3	O15551	220 aa		10.26	□□□□□ -0.77
PDLIM5-223	ENST00000627587	TREH	O43280	583 aa		10.26	□□□□□ -0.77
PDLIM5-223	ENST00000627587	CAND2	O75155	1236 aa		10.26	□□□□□ -0.77
PDLIM5-223	ENST00000627587	ARHGEF15	O94989	841 aa		10.26	□□□□□ -0.77
PDLIM5-223	ENST00000627587	PTPRO	Q16827	1216 aa		10.26	□□□□□ -0.77
PDLIM5-223	ENST00000627587	TMEM132A	Q24JP5	1023 aa		10.26	□□□□□ -0.77
PDLIM5-223	ENST00000627587	TRIM71	Q2Q1W2	868 aa	Known RBP	10.26	□□□□□ -0.77
PDLIM5-223	ENST00000627587	DNTTIP2	Q5QJE6	756 aa	Known RBP	10.26	□□□□□ -0.77
PDLIM5-223	ENST00000627587	ATF7IP2	Q5U623	682 aa		10.26	□□□□□ -0.77
PDLIM5-223	ENST00000627587	SV2A	Q7L0J3	742 aa		10.26	□□□□□ -0.77
PDLIM5-223	ENST00000627587	ARHGEF19	Q8IW93	802 aa		10.26	□□□□□ -0.77
PDLIM5-223	ENST00000627587	EHBP1	Q8NDI1	1231 aa		10.26	□□□□□ -0.77
PDLIM5-223	ENST00000627587	TAS1R2	Q8TE23	839 aa		10.26	□□□□□ -0.77
PDLIM5-223	ENST00000627587	ELMO3	Q96BJ8	720 aa		10.26	□□□□□ -0.77
PDLIM5-223	ENST00000627587	EPHX3	Q9H6B9	360 aa		10.26	□□□□□ -0.77
PDLIM5-223	ENST00000627587	PDE11A	Q9HCR9	933 aa		10.26	□□□□□ -0.77
PDLIM5-223	ENST00000627587	PRMT7	Q9NVM4	692 aa	Predicted RBP	10.26	□□□□□ -0.77
PDLIM5-223	ENST00000627587	APEX2	Q9UBZ4	518 aa		10.26	□□□□□ -0.77
PDLIM5-223	ENST00000627587	SMIM35	A0A1B0GVV1	85 aa		10.25	□□□□□ -0.77
PDLIM5-223	ENST00000627587	LINC01553	A4QN01	128 aa		10.25	□□□□□ -0.77
PDLIM5-223	ENST00000627587	RCCD1	A6NED2	376 aa		10.25	□□□□□ -0.77

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