RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 PHF6Q8IWS0 365 aaKnown RBP eCLIP20.69■□□□□ 0.93e-7■■■□□ 14.7
SQSTM1-216ENST00000626660 EFCAB13Q8IY85 973 aa20.69■□□□□ 0.9
SQSTM1-216ENST00000626660 CCDC127Q96BQ5 260 aa20.69■□□□□ 0.9
SQSTM1-216ENST00000626660 ANKRD36BP1Q96IX9 119 aa20.69■□□□□ 0.9
SQSTM1-216ENST00000626660 GAS2L1Q99501 681 aaPredicted RBP20.69■□□□□ 0.9
SQSTM1-216ENST00000626660 MKNK1Q9BUB5 465 aa20.69■□□□□ 0.9
SQSTM1-216ENST00000626660 LMAN2LQ9H0V9 348 aa20.69■□□□□ 0.9
SQSTM1-216ENST00000626660 ALG13Q9NP73 1137 aaKnown RBP20.69■□□□□ 0.9
SQSTM1-216ENST00000626660 ANO10Q9NW15 660 aa20.69■□□□□ 0.9
SQSTM1-216ENST00000626660 STK39Q9UEW8 545 aa20.69■□□□□ 0.9
SQSTM1-216ENST00000626660 RFXAPO00287 272 aa20.68■□□□□ 0.9
SQSTM1-216ENST00000626660 PODXLO00592 558 aa20.68■□□□□ 0.9
SQSTM1-216ENST00000626660 TADA2AO75478 443 aa20.68■□□□□ 0.9
SQSTM1-216ENST00000626660 AKAP3O75969 853 aa20.68■□□□□ 0.9
SQSTM1-216ENST00000626660 TNNC2P02585 160 aa20.68■□□□□ 0.9
SQSTM1-216ENST00000626660 DLATP10515 647 aaKnown RBP20.68■□□□□ 0.9
SQSTM1-216ENST00000626660 TNNI1P19237 187 aa20.68■□□□□ 0.9
SQSTM1-216ENST00000626660 CLCNKBP51801 687 aa20.68■□□□□ 0.9
SQSTM1-216ENST00000626660 WNT7BP56706 349 aa20.68■□□□□ 0.9
SQSTM1-216ENST00000626660 STX1AQ16623 288 aa20.68■□□□□ 0.9
SQSTM1-216ENST00000626660 PTPROQ16827 1216 aa20.68■□□□□ 0.9
SQSTM1-216ENST00000626660 CT47A1Q5JQC4 288 aaPredicted RBP20.68■□□□□ 0.9
SQSTM1-216ENST00000626660 WDR49Q8IV35 697 aa20.68■□□□□ 0.9
SQSTM1-216ENST00000626660 CSGALNACT2Q8N6G5 542 aa20.68■□□□□ 0.9
SQSTM1-216ENST00000626660 RABGGTAQ92696 567 aa20.68■□□□□ 0.9
SQSTM1-216ENST00000626660 CEP63Q96MT8 703 aa20.68■□□□□ 0.9
SQSTM1-216ENST00000626660 CGRRF1Q99675 332 aa20.68■□□□□ 0.9
SQSTM1-216ENST00000626660 PAAF1Q9BRP4 392 aa20.68■□□□□ 0.9
SQSTM1-216ENST00000626660 DPP3Q9NY33 737 aa20.68■□□□□ 0.9
SQSTM1-216ENST00000626660 CACNG4Q9UBN1 327 aa20.68■□□□□ 0.9
SQSTM1-216ENST00000626660 ADAM28Q9UKQ2 775 aa20.68■□□□□ 0.9
SQSTM1-216ENST00000626660 LZTS1Q9Y250 596 aa20.68■□□□□ 0.9
SQSTM1-216ENST00000626660 CHD9Q3L8U1 2897 aa20.68■□□□□ 0.9
SQSTM1-216ENST00000626660 TMEM189-UBE2V1I3L0A0 370 aa20.67■□□□□ 0.9
SQSTM1-216ENST00000626660 GRM6O15303 877 aa20.67■□□□□ 0.9
SQSTM1-216ENST00000626660 SLC16A3O15427 465 aaKnown RBP20.67■□□□□ 0.9
SQSTM1-216ENST00000626660 B3GAT3O94766 335 aa20.67■□□□□ 0.9
SQSTM1-216ENST00000626660 FGFR1OPO95684 399 aaKnown RBP20.67■□□□□ 0.9
SQSTM1-216ENST00000626660 ERCC5P28715 1186 aaPredicted RBP20.67■□□□□ 0.9
SQSTM1-216ENST00000626660 LRPAP1P30533 357 aa20.67■□□□□ 0.9
SQSTM1-216ENST00000626660 GUCY2FP51841 1108 aa20.67■□□□□ 0.9
SQSTM1-216ENST00000626660 UPP1Q16831 310 aa20.67■□□□□ 0.9
SQSTM1-216ENST00000626660 DUOXA2Q1HG44 320 aa20.67■□□□□ 0.9
SQSTM1-216ENST00000626660 INTS8Q75QN2 995 aaKnown RBP20.67■□□□□ 0.9
SQSTM1-216ENST00000626660 TMEM173Q86WV6 379 aaPredicted RBP20.67■□□□□ 0.9
SQSTM1-216ENST00000626660 ZC3H3Q8IXZ2 948 aaKnown RBP20.67■□□□□ 0.9
SQSTM1-216ENST00000626660 SPPL3Q8TCT6 385 aa20.67■□□□□ 0.9
SQSTM1-216ENST00000626660 TMC2Q8TDI7 906 aa20.67■□□□□ 0.9
SQSTM1-216ENST00000626660 POF1BQ8WVV4 589 aa20.67■□□□□ 0.9
SQSTM1-216ENST00000626660 EEF2KMTQ96G04 330 aa20.67■□□□□ 0.9
SQSTM1-216ENST00000626660 DUSP9Q99956 384 aaKnown RBP20.67■□□□□ 0.9
SQSTM1-216ENST00000626660 INTS13Q9NVM9 706 aa20.67■□□□□ 0.9
SQSTM1-216ENST00000626660 MARCH5Q9NX47 278 aa20.67■□□□□ 0.9
SQSTM1-216ENST00000626660 R3HCC1Q9Y3T6 440 aaKnown RBP20.67■□□□□ 0.9
SQSTM1-216ENST00000626660 MYO7AQ13402 2215 aa20.66■□□□□ 0.9
SQSTM1-216ENST00000626660 KIF4AO95239 1232 aa20.66■□□□□ 0.9
SQSTM1-216ENST00000626660 ELAVL2Q12926 359 aaKnown RBP20.66■□□□□ 0.9
SQSTM1-216ENST00000626660 BMS1Q14692 1282 aaKnown RBP20.66■□□□□ 0.9
SQSTM1-216ENST00000626660 TPD52L1Q16890 204 aaPredicted RBP20.66■□□□□ 0.9
SQSTM1-216ENST00000626660 LMBRD2Q68DH5 695 aaPredicted RBP20.66■□□□□ 0.9
SQSTM1-216ENST00000626660 DDX53Q86TM3 631 aaKnown RBP20.66■□□□□ 0.9
SQSTM1-216ENST00000626660 PARD3BQ8TEW8 1205 aa20.66■□□□□ 0.9
SQSTM1-216ENST00000626660 HASPINQ8TF76 798 aa20.66■□□□□ 0.9
SQSTM1-216ENST00000626660 BCL7CQ8WUZ0 217 aaPredicted RBP20.66■□□□□ 0.9
SQSTM1-216ENST00000626660 COL25A1Q9BXS0 654 aaPredicted RBP20.66■□□□□ 0.9
SQSTM1-216ENST00000626660 ITGA11Q9UKX5 1188 aa20.66■□□□□ 0.9
SQSTM1-216ENST00000626660 NUB1Q9Y5A7 615 aa20.66■□□□□ 0.9
SQSTM1-216ENST00000626660 SF3B1O75533 1304 aaKnown RBP eCLIP20.66■□□□□ 0.9
SQSTM1-216ENST00000626660 F8W810 466 aa20.65■□□□□ 0.9
SQSTM1-216ENST00000626660 TRAPPC3O43617 180 aa20.65■□□□□ 0.9
SQSTM1-216ENST00000626660 VAMP7P51809 220 aa20.65■□□□□ 0.9
SQSTM1-216ENST00000626660 AP3M2P53677 418 aa20.65■□□□□ 0.9
SQSTM1-216ENST00000626660 ENPEPQ07075 957 aa20.65■□□□□ 0.9
SQSTM1-216ENST00000626660 FUT10Q6P4F1 479 aa20.65■□□□□ 0.9
SQSTM1-216ENST00000626660 FILIP1Q7Z7B0 1213 aa20.65■□□□□ 0.9
SQSTM1-216ENST00000626660 MTMR12Q9C0I1 747 aa20.65■□□□□ 0.9
SQSTM1-216ENST00000626660 TLR9Q9NR96 1032 aa20.65■□□□□ 0.9
SQSTM1-216ENST00000626660 PTPRJQ12913 1337 aa20.64■□□□□ 0.89
SQSTM1-216ENST00000626660 LPXNO60711 386 aa20.64■□□□□ 0.89
SQSTM1-216ENST00000626660 GNA14O95837 355 aa20.64■□□□□ 0.89
SQSTM1-216ENST00000626660 IGFBP4P22692 258 aa20.64■□□□□ 0.89
SQSTM1-216ENST00000626660 TYRO3Q06418 890 aa20.64■□□□□ 0.89
SQSTM1-216ENST00000626660 BFSP1Q12934 665 aa20.64■□□□□ 0.89
SQSTM1-216ENST00000626660 CCDC40Q4G0X9 1142 aa20.64■□□□□ 0.89
SQSTM1-216ENST00000626660 C9orf57Q5W0N0 161 aa20.64■□□□□ 0.89
SQSTM1-216ENST00000626660 VPS52Q8N1B4 723 aa20.64■□□□□ 0.89
SQSTM1-216ENST00000626660 OR5B17Q8NGF7 314 aa20.64■□□□□ 0.89
SQSTM1-216ENST00000626660 MRPL38Q96DV4 380 aaKnown RBP20.64■□□□□ 0.89
SQSTM1-216ENST00000626660 POP1Q99575 1024 aaKnown RBP20.64■□□□□ 0.89
SQSTM1-216ENST00000626660 CDX2Q99626 313 aaPredicted RBP20.64■□□□□ 0.89
SQSTM1-216ENST00000626660 SRRTQ9BXP5 876 aaKnown RBP20.64■□□□□ 0.89
SQSTM1-216ENST00000626660 METTL14Q9HCE5 456 aaKnown RBP20.64■□□□□ 0.89
SQSTM1-216ENST00000626660 ENTPD7Q9NQZ7 604 aa20.64■□□□□ 0.89
SQSTM1-216ENST00000626660 LMCD1Q9NZU5 365 aa20.64■□□□□ 0.89
SQSTM1-216ENST00000626660 ARMCX3Q9UH62 379 aaPredicted RBP20.64■□□□□ 0.89
SQSTM1-216ENST00000626660 PRRC2BQ5JSZ5 2229 aaKnown RBP20.63■□□□□ 0.89
SQSTM1-216ENST00000626660 SCN1AP35498 2009 aa20.63■□□□□ 0.89
SQSTM1-216ENST00000626660 CHD7Q9P2D1 2997 aa20.63■□□□□ 0.89
SQSTM1-216ENST00000626660 LRRIQ3A6PVS8 624 aaPredicted RBP20.63■□□□□ 0.89
SQSTM1-216ENST00000626660 CSPG5O95196 566 aa20.63■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms