RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 GTF3C4Q9UKN8 822 aa11.37□□□□□ -0.59
CUX1-221ENST00000622516 DAAM1Q9Y4D1 1078 aa11.37□□□□□ -0.59
CUX1-221ENST00000622516 STYXL1Q9Y6J8 313 aa11.37□□□□□ -0.59
CUX1-221ENST00000622516 POTEJP0CG39 1038 aa11.36□□□□□ -0.59
CUX1-221ENST00000622516 UNGP13051 313 aaPredicted RBP11.36□□□□□ -0.59
CUX1-221ENST00000622516 MAPK4P31152 587 aa11.36□□□□□ -0.59
CUX1-221ENST00000622516 PLTPP55058 493 aa11.36□□□□□ -0.59
CUX1-221ENST00000622516 PTENP60484 403 aa11.36□□□□□ -0.59
CUX1-221ENST00000622516 TFAMQ00059 246 aaKnown RBP11.36□□□□□ -0.59
CUX1-221ENST00000622516 SNX1Q13596 522 aa11.36□□□□□ -0.59
CUX1-221ENST00000622516 CELF3Q5SZQ8 465 aaKnown RBP11.36□□□□□ -0.59
CUX1-221ENST00000622516 ALS2CLQ60I27 953 aa11.36□□□□□ -0.59
CUX1-221ENST00000622516 TMEM192Q8IY95 271 aa11.36□□□□□ -0.59
CUX1-221ENST00000622516 SH3GL2Q99962 352 aa11.36□□□□□ -0.59
CUX1-221ENST00000622516 MINDY3Q9H8M7 445 aa11.36□□□□□ -0.59
CUX1-221ENST00000622516 ADGRA2Q96PE1 1338 aa11.36□□□□□ -0.59
CUX1-221ENST00000622516 WEE2P0C1S8 567 aa11.36□□□□□ -0.59
CUX1-221ENST00000622516 TGFB3P10600 412 aa11.36□□□□□ -0.59
CUX1-221ENST00000622516 ACO1P21399 889 aaKnown RBP11.36□□□□□ -0.59
CUX1-221ENST00000622516 GNA15P30679 374 aa11.36□□□□□ -0.59
CUX1-221ENST00000622516 EPHX2P34913 555 aa11.36□□□□□ -0.59
CUX1-221ENST00000622516 ACTN2P35609 894 aa11.36□□□□□ -0.59
CUX1-221ENST00000622516 MYL6P60660 151 aa11.36□□□□□ -0.59
CUX1-221ENST00000622516 CLDN10P78369 228 aa11.36□□□□□ -0.59
CUX1-221ENST00000622516 IRX5P78411 483 aaPredicted RBP11.36□□□□□ -0.59
CUX1-221ENST00000622516 PLCB4Q15147 1175 aa11.36□□□□□ -0.59
CUX1-221ENST00000622516 SLFN12LQ6IEE8 588 aa11.36□□□□□ -0.59
CUX1-221ENST00000622516 MCOLN2Q8IZK6 566 aa11.36□□□□□ -0.59
CUX1-221ENST00000622516 WHAMMQ8TF30 809 aa11.36□□□□□ -0.59
CUX1-221ENST00000622516 SLITRK6Q9H5Y7 841 aa11.36□□□□□ -0.59
CUX1-221ENST00000622516 KIAA1586Q9HCI6 787 aa11.36□□□□□ -0.59
CUX1-221ENST00000622516 USTQ9Y2C2 406 aa11.36□□□□□ -0.59
CUX1-221ENST00000622516 ATP8A1Q9Y2Q0 1164 aa11.36□□□□□ -0.59
CUX1-221ENST00000622516 PCDHB2Q9Y5E7 798 aa11.36□□□□□ -0.59
CUX1-221ENST00000622516 GOLGA6L10A0A0M3HER8 536 aa11.35□□□□□ -0.59
CUX1-221ENST00000622516 THAP12O43422 761 aa11.35□□□□□ -0.59
CUX1-221ENST00000622516 OPA1O60313 960 aa11.35□□□□□ -0.59
CUX1-221ENST00000622516 IQCF3P0C7M6 154 aa11.35□□□□□ -0.59
CUX1-221ENST00000622516 CTNNA1P35221 906 aaKnown RBP11.35□□□□□ -0.59
CUX1-221ENST00000622516 RFC5P40937 340 aa11.35□□□□□ -0.59
CUX1-221ENST00000622516 SSR1P43307 286 aaKnown RBP11.35□□□□□ -0.59
CUX1-221ENST00000622516 NSFP46459 744 aaKnown RBP11.35□□□□□ -0.59
CUX1-221ENST00000622516 DHX9Q08211 1270 aaKnown RBP11.35□□□□□ -0.59
CUX1-221ENST00000622516 ATP8B4Q8TF62 1192 aa11.35□□□□□ -0.59
CUX1-221ENST00000622516 C1orf54Q8WWF1 131 aa11.35□□□□□ -0.59
CUX1-221ENST00000622516 CD101Q93033 1021 aa11.35□□□□□ -0.59
CUX1-221ENST00000622516 PSD3Q9NYI0 1048 aa11.35□□□□□ -0.59
CUX1-221ENST00000622516 MROH7Q68CQ1 1323 aa11.35□□□□□ -0.59
CUX1-221ENST00000622516 DICER1Q9UPY3 1922 aaKnown RBP11.35□□□□□ -0.59
CUX1-221ENST00000622516 PRKCBP05771 671 aa11.35□□□□□ -0.59
CUX1-221ENST00000622516 HADHBP55084 474 aaKnown RBP11.35□□□□□ -0.59
CUX1-221ENST00000622516 MCCD1P59942 119 aaPredicted RBP11.35□□□□□ -0.59
CUX1-221ENST00000622516 ORC1Q13415 861 aa11.35□□□□□ -0.59
CUX1-221ENST00000622516 CUL1Q13616 776 aa11.35□□□□□ -0.59
CUX1-221ENST00000622516 UBAP2Q5T6F2 1119 aaKnown RBP11.35□□□□□ -0.59
CUX1-221ENST00000622516 SEL1L2Q5TEA6 688 aa11.35□□□□□ -0.59
CUX1-221ENST00000622516 GPAT2Q6NUI2 795 aa11.35□□□□□ -0.59
CUX1-221ENST00000622516 CCDC137Q6PK04 289 aaKnown RBP11.35□□□□□ -0.59
CUX1-221ENST00000622516 LEKR1Q6ZMV7 388 aa11.35□□□□□ -0.59
CUX1-221ENST00000622516 MMS22LQ6ZRQ5 1243 aa11.35□□□□□ -0.59
CUX1-221ENST00000622516 JAMLQ86YT9 394 aa11.35□□□□□ -0.59
CUX1-221ENST00000622516 RBBP8NLQ8NC74 664 aaPredicted RBP11.35□□□□□ -0.59
CUX1-221ENST00000622516 HERPUD2Q9BSE4 406 aa11.35□□□□□ -0.59
CUX1-221ENST00000622516 HEMGNQ9BXL5 484 aa11.35□□□□□ -0.59
CUX1-221ENST00000622516 KLHL11Q9NVR0 708 aa11.35□□□□□ -0.59
CUX1-221ENST00000622516 TTC7AQ9ULT0 858 aaPredicted RBP11.35□□□□□ -0.59
CUX1-221ENST00000622516 MIF4GDA9UHW6 222 aaKnown RBP11.34□□□□□ -0.59
CUX1-221ENST00000622516 CXCL11O14625 94 aa11.34□□□□□ -0.59
CUX1-221ENST00000622516 CLTAP09496 248 aa11.34□□□□□ -0.59
CUX1-221ENST00000622516 RARAP10276 462 aa11.34□□□□□ -0.59
CUX1-221ENST00000622516 HPDP32754 393 aaPredicted RBP11.34□□□□□ -0.59
CUX1-221ENST00000622516 MAPK6Q16659 721 aa11.34□□□□□ -0.59
CUX1-221ENST00000622516 EEF1DP3Q658K8 133 aa11.34□□□□□ -0.59
CUX1-221ENST00000622516 EFCAB12Q6NXP0 572 aa11.34□□□□□ -0.59
CUX1-221ENST00000622516 LRRC31Q6UY01 552 aa11.34□□□□□ -0.59
CUX1-221ENST00000622516 UHMK1Q8TAS1 419 aaKnown RBP11.34□□□□□ -0.59
CUX1-221ENST00000622516 ATG4AQ8WYN0 398 aa11.34□□□□□ -0.59
CUX1-221ENST00000622516 CGRRF1Q99675 332 aa11.34□□□□□ -0.59
CUX1-221ENST00000622516 ACO2Q99798 780 aaKnown RBP11.34□□□□□ -0.59
CUX1-221ENST00000622516 ANKRD65E5RJM6 399 aa11.34□□□□□ -0.59
CUX1-221ENST00000622516 FAM189A1O60320 539 aa11.34□□□□□ -0.59
CUX1-221ENST00000622516 TOM1L1O75674 476 aa11.34□□□□□ -0.59
CUX1-221ENST00000622516 HSPA9P38646 679 aaKnown RBP11.34□□□□□ -0.59
CUX1-221ENST00000622516 PPFIA1Q13136 1202 aa11.34□□□□□ -0.59
CUX1-221ENST00000622516 DPY19L2Q6NUT2 758 aa11.34□□□□□ -0.59
CUX1-221ENST00000622516 CCDC105Q8IYK2 499 aa11.34□□□□□ -0.59
CUX1-221ENST00000622516 FBXO25Q8TCJ0 367 aa11.34□□□□□ -0.59
CUX1-221ENST00000622516 RPS6KC1Q96S38 1066 aa11.34□□□□□ -0.59
CUX1-221ENST00000622516 ERP44Q9BS26 406 aa11.34□□□□□ -0.59
CUX1-221ENST00000622516 MRPL4Q9BYD3 311 aaKnown RBP11.34□□□□□ -0.59
CUX1-221ENST00000622516 ADAM22Q9P0K1 906 aa11.34□□□□□ -0.59
CUX1-221ENST00000622516 NXF1Q9UBU9 619 aaKnown RBP11.34□□□□□ -0.59
CUX1-221ENST00000622516 CLEC11AQ9Y240 323 aa11.34□□□□□ -0.59
CUX1-221ENST00000622516 PCDHA3Q9Y5H8 950 aa11.34□□□□□ -0.59
CUX1-221ENST00000622516 GOLGA8KD6RF30 607 aa11.34□□□□□ -0.59
CUX1-221ENST00000622516 MYO1FO00160 1098 aa11.34□□□□□ -0.59
CUX1-221ENST00000622516 ZEB2O60315 1214 aa11.34□□□□□ -0.59
CUX1-221ENST00000622516 ZC3H11AO75152 810 aaKnown RBP eCLIP11.34□□□□□ -0.593e-6■■■■□ 25.7
CUX1-221ENST00000622516 SLC25A27O95847 323 aa11.34□□□□□ -0.59
CUX1-221ENST00000622516 LDHAP00338 332 aaKnown RBP11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms