RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 KIAA0319Q5VV43 1072 aa17.62■□□□□ 0.41
LSM4-206ENST00000600289 DCLRE1AQ6PJP8 1040 aa17.62■□□□□ 0.41
LSM4-206ENST00000600289 EPM2AIP1Q7L775 607 aaPredicted RBP17.62■□□□□ 0.41
LSM4-206ENST00000600289 CD302Q8IX05 232 aa17.62■□□□□ 0.41
LSM4-206ENST00000600289 VN1R2Q8NFZ6 395 aa17.62■□□□□ 0.41
LSM4-206ENST00000600289 PBXIP1Q96AQ6 731 aa17.62■□□□□ 0.41
LSM4-206ENST00000600289 PAGE5Q96GU1 130 aa17.62■□□□□ 0.41
LSM4-206ENST00000600289 FGFBP2Q9BYJ0 223 aa17.62■□□□□ 0.41
LSM4-206ENST00000600289 RXFP1Q9HBX9 757 aa17.62■□□□□ 0.41
LSM4-206ENST00000600289 MRPL17Q9NRX2 175 aaKnown RBP17.62■□□□□ 0.41
LSM4-206ENST00000600289 TBC1D7Q9P0N9 293 aa17.62■□□□□ 0.41
LSM4-206ENST00000600289 CLEC1BQ9P126 229 aa17.62■□□□□ 0.41
LSM4-206ENST00000600289 DENND4AQ7Z401 1863 aa17.62■□□□□ 0.41
LSM4-206ENST00000600289 TSC2P49815 1807 aa17.61■□□□□ 0.41
LSM4-206ENST00000600289 CLASP2O75122 1294 aaKnown RBP17.61■□□□□ 0.41
LSM4-206ENST00000600289 TADA2AO75478 443 aa17.61■□□□□ 0.41
LSM4-206ENST00000600289 CYP3A5P20815 502 aa17.61■□□□□ 0.41
LSM4-206ENST00000600289 GARTP22102 1010 aa17.61■□□□□ 0.41
LSM4-206ENST00000600289 ADSSP30520 456 aa17.61■□□□□ 0.41
LSM4-206ENST00000600289 RPL9P32969 192 aaKnown RBP17.61■□□□□ 0.41
LSM4-206ENST00000600289 TNFSF9P41273 254 aa17.61■□□□□ 0.41
LSM4-206ENST00000600289 NDUFV1P49821 464 aa17.61■□□□□ 0.41
LSM4-206ENST00000600289 CLCNKBP51801 687 aa17.61■□□□□ 0.41
LSM4-206ENST00000600289 NDUFA8P51970 172 aa17.61■□□□□ 0.41
LSM4-206ENST00000600289 SOX4Q06945 474 aaPredicted RBP17.61■□□□□ 0.41
LSM4-206ENST00000600289 KCNA1Q09470 495 aa17.61■□□□□ 0.41
LSM4-206ENST00000600289 CUL4BQ13620 913 aa17.61■□□□□ 0.41
LSM4-206ENST00000600289 SMAD2Q15796 467 aaKnown RBP17.61■□□□□ 0.41
LSM4-206ENST00000600289 ZBTB6Q15916 424 aa17.61■□□□□ 0.41
LSM4-206ENST00000600289 ENOX2Q16206 610 aaKnown RBP17.61■□□□□ 0.41
LSM4-206ENST00000600289 USP41Q3LFD5 358 aa17.61■□□□□ 0.41
LSM4-206ENST00000600289 FAM26FQ5R3K3 315 aa17.61■□□□□ 0.41
LSM4-206ENST00000600289 TRIM67Q6ZTA4 783 aa17.61■□□□□ 0.41
LSM4-206ENST00000600289 ASCL5Q7RTU5 278 aa17.61■□□□□ 0.41
LSM4-206ENST00000600289 PPFIBP1Q86W92 1011 aa17.61■□□□□ 0.41
LSM4-206ENST00000600289 EMILIN2Q9BXX0 1053 aa17.61■□□□□ 0.41
LSM4-206ENST00000600289 GPR62Q9BZJ7 368 aa17.61■□□□□ 0.41
LSM4-206ENST00000600289 RPF1Q9H9Y2 349 aaKnown RBP17.61■□□□□ 0.41
LSM4-206ENST00000600289 GDPD2Q9HCC8 539 aa17.61■□□□□ 0.41
LSM4-206ENST00000600289 CACNG4Q9UBN1 327 aa17.61■□□□□ 0.41
LSM4-206ENST00000600289 AGO2Q9UKV8 859 aaKnown RBP17.61■□□□□ 0.41
LSM4-206ENST00000600289 ZFHX4Q86UP3 3567 aa17.6■□□□□ 0.41
LSM4-206ENST00000600289 TISP43B9A030 160 aa17.6■□□□□ 0.41
LSM4-206ENST00000600289 PROB1E7EW31 1015 aa17.6■□□□□ 0.41
LSM4-206ENST00000600289 KIAA0391O15091 583 aaKnown RBP17.6■□□□□ 0.41
LSM4-206ENST00000600289 KLRC4O43908 158 aa17.6■□□□□ 0.41
LSM4-206ENST00000600289 AFMP43652 599 aa17.6■□□□□ 0.41
LSM4-206ENST00000600289 CREMQ03060 361 aa17.6■□□□□ 0.41
LSM4-206ENST00000600289 SMAD4Q13485 552 aaKnown RBP17.6■□□□□ 0.41
LSM4-206ENST00000600289 BMT2Q1RMZ1 405 aa17.6■□□□□ 0.41
LSM4-206ENST00000600289 ZBTB41Q5SVQ8 909 aa17.6■□□□□ 0.41
LSM4-206ENST00000600289 CD300LGQ6UXG3 332 aa17.6■□□□□ 0.41
LSM4-206ENST00000600289 TAS1R1Q7RTX1 841 aa17.6■□□□□ 0.41
LSM4-206ENST00000600289 FSIP1Q8NA03 581 aa17.6■□□□□ 0.41
LSM4-206ENST00000600289 ZNF507Q8TCN5 953 aa17.6■□□□□ 0.41
LSM4-206ENST00000600289 AUTS2Q8WXX7 1259 aa17.6■□□□□ 0.41
LSM4-206ENST00000600289 CASP10Q92851 521 aa17.6■□□□□ 0.41
LSM4-206ENST00000600289 BLZF1Q9H2G9 400 aa17.6■□□□□ 0.41
LSM4-206ENST00000600289 ASB7Q9H672 318 aa17.6■□□□□ 0.41
LSM4-206ENST00000600289 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP17.6■□□□□ 0.41
LSM4-206ENST00000600289 FNIP2Q9P278 1114 aa17.6■□□□□ 0.41
LSM4-206ENST00000600289 CD207Q9UJ71 328 aa17.6■□□□□ 0.41
LSM4-206ENST00000600289 DERAQ9Y315 318 aa17.6■□□□□ 0.41
LSM4-206ENST00000600289 HCFC2Q9Y5Z7 792 aa17.6■□□□□ 0.41
LSM4-206ENST00000600289 WDR87Q6ZQQ6 2873 aa17.59■□□□□ 0.41
LSM4-206ENST00000600289 XPOTO43592 962 aaKnown RBP17.59■□□□□ 0.41
LSM4-206ENST00000600289 PRPF6O94906 941 aaKnown RBP17.59■□□□□ 0.41
LSM4-206ENST00000600289 LDHAP00338 332 aaKnown RBP17.59■□□□□ 0.41
LSM4-206ENST00000600289 HOXB8P17481 243 aaPredicted RBP17.59■□□□□ 0.41
LSM4-206ENST00000600289 CASP1P29466 404 aa17.59■□□□□ 0.41
LSM4-206ENST00000600289 LRPAP1P30533 357 aa17.59■□□□□ 0.41
LSM4-206ENST00000600289 ANP32AP39687 249 aaKnown RBP17.59■□□□□ 0.41
LSM4-206ENST00000600289 VCPP55072 806 aaKnown RBP17.59■□□□□ 0.41
LSM4-206ENST00000600289 PDXDC1Q6P996 788 aa17.59■□□□□ 0.41
LSM4-206ENST00000600289 CRELD2Q6UXH1 353 aaPredicted RBP17.59■□□□□ 0.41
LSM4-206ENST00000600289 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.59■□□□□ 0.41
LSM4-206ENST00000600289 SUGP1Q8IWZ8 645 aaKnown RBP17.59■□□□□ 0.41
LSM4-206ENST00000600289 FBXL6Q8N531 539 aa17.59■□□□□ 0.41
LSM4-206ENST00000600289 SMRP1Q8NCR6 262 aa17.59■□□□□ 0.41
LSM4-206ENST00000600289 SLC22A17Q8WUG5 538 aa17.59■□□□□ 0.41
LSM4-206ENST00000600289 POMGNT1Q8WZA1 660 aa17.59■□□□□ 0.41
LSM4-206ENST00000600289 RABGGTAQ92696 567 aa17.59■□□□□ 0.41
LSM4-206ENST00000600289 HPS3Q969F9 1004 aa17.59■□□□□ 0.41
LSM4-206ENST00000600289 KLHL5Q96PQ7 755 aa17.59■□□□□ 0.41
LSM4-206ENST00000600289 POP1Q99575 1024 aaKnown RBP17.59■□□□□ 0.41
LSM4-206ENST00000600289 IKZF4Q9H2S9 585 aa17.59■□□□□ 0.41
LSM4-206ENST00000600289 GOLPH3LQ9H4A5 285 aa17.59■□□□□ 0.41
LSM4-206ENST00000600289 GOLGA2P5Q9HBQ8 144 aa17.59■□□□□ 0.41
LSM4-206ENST00000600289 BARX2Q9UMQ3 279 aaPredicted RBP17.59■□□□□ 0.41
LSM4-206ENST00000600289 UBQLN1Q9UMX0 589 aaKnown RBP17.59■□□□□ 0.41
LSM4-206ENST00000600289 C2orf16Q68DN1 1984 aa17.59■□□□□ 0.41
LSM4-206ENST00000600289 LACTBL1A8MY62 500 aa17.58■□□□□ 0.4
LSM4-206ENST00000600289 PODXLO00592 558 aa17.58■□□□□ 0.4
LSM4-206ENST00000600289 MBTPS2O43462 519 aa17.58■□□□□ 0.4
LSM4-206ENST00000600289 TRAPPC3O43617 180 aa17.58■□□□□ 0.4
LSM4-206ENST00000600289 B3GAT3O94766 335 aa17.58■□□□□ 0.4
LSM4-206ENST00000600289 CNPP09543 421 aaKnown RBP17.58■□□□□ 0.4
LSM4-206ENST00000600289 FGFR3P22607 806 aa17.58■□□□□ 0.4
LSM4-206ENST00000600289 HOXD13P35453 343 aa17.58■□□□□ 0.4
LSM4-206ENST00000600289 SNRPFP62306 86 aaKnown RBP17.58■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms