RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 MTCL1Q9Y4B5 1905 aaKnown RBP13.82□□□□□ -0.2
UPF1-208ENST00000600012 RIF1Q5UIP0 2472 aaKnown RBP13.82□□□□□ -0.2
UPF1-208ENST00000600012 PROB1E7EW31 1015 aa13.82□□□□□ -0.2
UPF1-208ENST00000600012 NRP1O14786 923 aa13.82□□□□□ -0.2
UPF1-208ENST00000600012 IKBKBO14920 756 aa13.82□□□□□ -0.2
UPF1-208ENST00000600012 LILRB3O75022 631 aa13.82□□□□□ -0.2
UPF1-208ENST00000600012 PRPF6O94906 941 aaKnown RBP13.82□□□□□ -0.2
UPF1-208ENST00000600012 POMCP01189 267 aa13.82□□□□□ -0.2
UPF1-208ENST00000600012 SOD2P04179 222 aa13.82□□□□□ -0.2
UPF1-208ENST00000600012 ITGA4P13612 1032 aa13.82□□□□□ -0.2
UPF1-208ENST00000600012 CCNE1P24864 410 aa13.82□□□□□ -0.2
UPF1-208ENST00000600012 AXLP30530 894 aa13.82□□□□□ -0.2
UPF1-208ENST00000600012 PPP1R2P41236 205 aa13.82□□□□□ -0.2
UPF1-208ENST00000600012 CLCN5P51795 746 aa13.82□□□□□ -0.2
UPF1-208ENST00000600012 AFF1P51825 1210 aaKnown RBP13.82□□□□□ -0.2
UPF1-208ENST00000600012 UVSSAQ2YD98 709 aa13.82□□□□□ -0.2
UPF1-208ENST00000600012 ZC2HC1CQ53FD0 456 aaPredicted RBP13.82□□□□□ -0.2
UPF1-208ENST00000600012 ELMSAN1Q6PJG2 1045 aa13.82□□□□□ -0.2
UPF1-208ENST00000600012 EPM2AIP1Q7L775 607 aaPredicted RBP13.82□□□□□ -0.2
UPF1-208ENST00000600012 ASAP3Q8TDY4 903 aa13.82□□□□□ -0.2
UPF1-208ENST00000600012 KIFAP3Q92845 792 aa13.82□□□□□ -0.2
UPF1-208ENST00000600012 CCDC51Q96ER9 411 aa13.82□□□□□ -0.2
UPF1-208ENST00000600012 DHTKD1Q96HY7 919 aaPredicted RBP13.82□□□□□ -0.2
UPF1-208ENST00000600012 HERC2P3Q9BVR0 1158 aa13.82□□□□□ -0.2
UPF1-208ENST00000600012 HSD3B7Q9H2F3 369 aa13.82□□□□□ -0.2
UPF1-208ENST00000600012 LARSQ9P2J5 1176 aaKnown RBP13.82□□□□□ -0.2
UPF1-208ENST00000600012 SSX2IPQ9Y2D8 614 aa13.82□□□□□ -0.2
UPF1-208ENST00000600012 NFE2L3Q9Y4A8 694 aa13.82□□□□□ -0.2
UPF1-208ENST00000600012 DOCK8Q8NF50 2099 aa13.81□□□□□ -0.2
UPF1-208ENST00000600012 INPPL1O15357 1258 aa13.81□□□□□ -0.2
UPF1-208ENST00000600012 SLC16A4O15374 487 aa13.81□□□□□ -0.2
UPF1-208ENST00000600012 ADH1AP07327 375 aa13.81□□□□□ -0.2
UPF1-208ENST00000600012 MXD4Q14582 209 aaPredicted RBP13.81□□□□□ -0.2
UPF1-208ENST00000600012 TPD52L1Q16890 204 aaPredicted RBP13.81□□□□□ -0.2
UPF1-208ENST00000600012 HSP90AA4PQ58FG1 418 aa13.81□□□□□ -0.2
UPF1-208ENST00000600012 SPATA1Q5VX52 437 aa13.81□□□□□ -0.2
UPF1-208ENST00000600012 TTI2Q6NXR4 508 aa13.81□□□□□ -0.2
UPF1-208ENST00000600012 NOTUMQ6P988 496 aa13.81□□□□□ -0.2
UPF1-208ENST00000600012 SMG8Q8ND04 991 aaKnown RBP13.81□□□□□ -0.2
UPF1-208ENST00000600012 CMASQ8NFW8 434 aaPredicted RBP13.81□□□□□ -0.2
UPF1-208ENST00000600012 FEZF2Q8TBJ5 459 aa13.81□□□□□ -0.2
UPF1-208ENST00000600012 RPS6KC1Q96S38 1066 aa13.81□□□□□ -0.2
UPF1-208ENST00000600012 DUSP9Q99956 384 aaKnown RBP13.81□□□□□ -0.2
UPF1-208ENST00000600012 KIFC3Q9BVG8 833 aa13.81□□□□□ -0.2
UPF1-208ENST00000600012 FANCLQ9NW38 375 aa13.81□□□□□ -0.2
UPF1-208ENST00000600012 MARCH5Q9NX47 278 aa13.81□□□□□ -0.2
UPF1-208ENST00000600012 DPP7Q9UHL4 492 aa13.81□□□□□ -0.2
UPF1-208ENST00000600012 PRG3Q9Y2Y8 225 aaPredicted RBP13.81□□□□□ -0.2
UPF1-208ENST00000600012 IPPQ9Y573 584 aa13.81□□□□□ -0.2
UPF1-208ENST00000600012 ZMYM2Q9UBW7 1377 aa13.81□□□□□ -0.2
UPF1-208ENST00000600012 CCDC169A6NNP5 214 aa13.8□□□□□ -0.2
UPF1-208ENST00000600012 C2CD2LO14523 706 aa13.8□□□□□ -0.2
UPF1-208ENST00000600012 EIF3DO15371 548 aaKnown RBP eCLIP13.8□□□□□ -0.2
UPF1-208ENST00000600012 AP5Z1O43299 807 aa13.8□□□□□ -0.2
UPF1-208ENST00000600012 TSPAN1O60635 241 aa13.8□□□□□ -0.2
UPF1-208ENST00000600012 GLRA2P23416 452 aa13.8□□□□□ -0.2
UPF1-208ENST00000600012 HOXD13P35453 343 aa13.8□□□□□ -0.2
UPF1-208ENST00000600012 ARL2P36404 184 aa13.8□□□□□ -0.2
UPF1-208ENST00000600012 NBL1P41271 181 aa13.8□□□□□ -0.2
UPF1-208ENST00000600012 NPTX2P47972 431 aa13.8□□□□□ -0.2
UPF1-208ENST00000600012 GLUD2P49448 558 aa13.8□□□□□ -0.2
UPF1-208ENST00000600012 NCKAP1LP55160 1127 aa13.8□□□□□ -0.2
UPF1-208ENST00000600012 PTENP60484 403 aa13.8□□□□□ -0.2
UPF1-208ENST00000600012 TPM4P67936 248 aa13.8□□□□□ -0.2
UPF1-208ENST00000600012 PLCB2Q00722 1185 aa13.8□□□□□ -0.2
UPF1-208ENST00000600012 DSC1Q08554 894 aa13.8□□□□□ -0.2
UPF1-208ENST00000600012 NCBP1Q09161 790 aaKnown RBP13.8□□□□□ -0.2
UPF1-208ENST00000600012 KCNA1Q09470 495 aa13.8□□□□□ -0.2
UPF1-208ENST00000600012 DMP1Q13316 513 aaPredicted RBP13.8□□□□□ -0.2
UPF1-208ENST00000600012 TDGQ13569 410 aa13.8□□□□□ -0.2
UPF1-208ENST00000600012 TFDP1Q14186 410 aa13.8□□□□□ -0.2
UPF1-208ENST00000600012 BMT2Q1RMZ1 405 aa13.8□□□□□ -0.2
UPF1-208ENST00000600012 ANKRD40Q6AI12 368 aa13.8□□□□□ -0.2
UPF1-208ENST00000600012 CENPPQ6IPU0 288 aa13.8□□□□□ -0.2
UPF1-208ENST00000600012 CYP26C1Q6V0L0 522 aa13.8□□□□□ -0.2
UPF1-208ENST00000600012 ZNF720Q7Z2F6 126 aa13.8□□□□□ -0.2
UPF1-208ENST00000600012 IFNLR1Q8IU57 520 aaPredicted RBP13.8□□□□□ -0.2
UPF1-208ENST00000600012 COLGALT2Q8IYK4 626 aa13.8□□□□□ -0.2
UPF1-208ENST00000600012 RNF168Q8IYW5 571 aaPredicted RBP13.8□□□□□ -0.2
UPF1-208ENST00000600012 ZNF507Q8TCN5 953 aa13.8□□□□□ -0.2
UPF1-208ENST00000600012 IFT74Q96LB3 600 aa13.8□□□□□ -0.2
UPF1-208ENST00000600012 RHOBTB2Q9BYZ6 727 aa13.8□□□□□ -0.2
UPF1-208ENST00000600012 IKZF4Q9H2S9 585 aa13.8□□□□□ -0.2
UPF1-208ENST00000600012 KMT5AQ9NQR1 393 aa13.8□□□□□ -0.2
UPF1-208ENST00000600012 MAN1C1Q9NR34 630 aa13.8□□□□□ -0.2
UPF1-208ENST00000600012 SAMSN1Q9NSI8 373 aaKnown RBP13.8□□□□□ -0.2
UPF1-208ENST00000600012 IGSF9Q9P2J2 1179 aa13.8□□□□□ -0.2
UPF1-208ENST00000600012 DUSP12Q9UNI6 340 aa13.8□□□□□ -0.2
UPF1-208ENST00000600012 USP34Q70CQ2 3546 aa13.8□□□□□ -0.2
UPF1-208ENST00000600012 UBE4BO95155 1302 aa13.8□□□□□ -0.2
UPF1-208ENST00000600012 BICDL2A1A5D9 508 aa13.79□□□□□ -0.2
UPF1-208ENST00000600012 ARL5CA6NH57 179 aa13.79□□□□□ -0.2
UPF1-208ENST00000600012 INO80B-WBP1J3KQ70 363 aa13.79□□□□□ -0.2
UPF1-208ENST00000600012 PPP1R37O75864 691 aa13.79□□□□□ -0.2
UPF1-208ENST00000600012 KIF20AO95235 890 aa13.79□□□□□ -0.2
UPF1-208ENST00000600012 GLUD1P00367 558 aa13.79□□□□□ -0.2
UPF1-208ENST00000600012 MAPTP10636 758 aaKnown RBP13.79□□□□□ -0.2
UPF1-208ENST00000600012 ATP1A3P13637 1013 aa13.79□□□□□ -0.2
UPF1-208ENST00000600012 MLH1P40692 756 aa13.79□□□□□ -0.2
UPF1-208ENST00000600012 OR1G1P47890 313 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms