RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 GPD1LQ8N335 351 aa21.19■□□□□ 0.98
SHKBP1-221ENST00000599833 EFHBQ8N7U6 833 aa21.19■□□□□ 0.98
SHKBP1-221ENST00000599833 PABPC5Q96DU9 382 aaKnown RBP21.19■□□□□ 0.98
SHKBP1-221ENST00000599833 FAM84AQ96KN4 292 aa21.19■□□□□ 0.98
SHKBP1-221ENST00000599833 TSPAN18Q96SJ8 248 aa21.19■□□□□ 0.98
SHKBP1-221ENST00000599833 LMBRD1Q9NUN5 540 aa21.19■□□□□ 0.98
SHKBP1-221ENST00000599833 DERAQ9Y315 318 aa21.19■□□□□ 0.98
SHKBP1-221ENST00000599833 PTPRJQ12913 1337 aa21.19■□□□□ 0.98
SHKBP1-221ENST00000599833 KIAA0391O15091 583 aaKnown RBP21.18■□□□□ 0.98
SHKBP1-221ENST00000599833 CXCL14O95715 111 aa21.18■□□□□ 0.98
SHKBP1-221ENST00000599833 BMP6P22004 513 aa21.18■□□□□ 0.98
SHKBP1-221ENST00000599833 ZCWPW2Q504Y3 356 aa21.18■□□□□ 0.98
SHKBP1-221ENST00000599833 RBM23Q86U06 439 aaKnown RBP21.18■□□□□ 0.98
SHKBP1-221ENST00000599833 SMYD4Q8IYR2 804 aaPredicted RBP21.18■□□□□ 0.98
SHKBP1-221ENST00000599833 GSDMAQ96QA5 445 aa21.18■□□□□ 0.98
SHKBP1-221ENST00000599833 UBE2ZQ9H832 354 aaPredicted RBP21.18■□□□□ 0.98
SHKBP1-221ENST00000599833 RXFP1Q9HBX9 757 aa21.18■□□□□ 0.98
SHKBP1-221ENST00000599833 CLEC1BQ9P126 229 aa21.18■□□□□ 0.98
SHKBP1-221ENST00000599833 STK39Q9UEW8 545 aa21.18■□□□□ 0.98
SHKBP1-221ENST00000599833 UBQLN1Q9UMX0 589 aaKnown RBP21.18■□□□□ 0.98
SHKBP1-221ENST00000599833 C2CD2Q9Y426 696 aa21.18■□□□□ 0.98
SHKBP1-221ENST00000599833 ANO9A1A5B4 782 aa21.17■□□□□ 0.98
SHKBP1-221ENST00000599833 CLASP2O75122 1294 aaKnown RBP21.17■□□□□ 0.98
SHKBP1-221ENST00000599833 B3GAT3O94766 335 aa21.17■□□□□ 0.98
SHKBP1-221ENST00000599833 LDHAP00338 332 aaKnown RBP21.17■□□□□ 0.98
SHKBP1-221ENST00000599833 RPL9P32969 192 aaKnown RBP21.17■□□□□ 0.98
SHKBP1-221ENST00000599833 BRCC3P46736 316 aa21.17■□□□□ 0.98
SHKBP1-221ENST00000599833 AARSP49588 968 aaKnown RBP eCLIP21.17■□□□□ 0.98
SHKBP1-221ENST00000599833 TFF2Q03403 129 aa21.17■□□□□ 0.98
SHKBP1-221ENST00000599833 COBLL1Q53SF7 1204 aa21.17■□□□□ 0.98
SHKBP1-221ENST00000599833 GPR65Q8IYL9 337 aa21.17■□□□□ 0.98
SHKBP1-221ENST00000599833 GUF1Q8N442 669 aaKnown RBP21.17■□□□□ 0.98
SHKBP1-221ENST00000599833 MICAL1Q8TDZ2 1067 aa21.17■□□□□ 0.98
SHKBP1-221ENST00000599833 DDX27Q96GQ7 796 aaKnown RBP21.17■□□□□ 0.98
SHKBP1-221ENST00000599833 TLE6Q9H808 572 aa21.17■□□□□ 0.98
SHKBP1-221ENST00000599833 RBAKQ9NYW8 714 aaPredicted RBP21.17■□□□□ 0.98
SHKBP1-221ENST00000599833 CGNQ9P2M7 1197 aaKnown RBP21.17■□□□□ 0.98
SHKBP1-221ENST00000599833 TRAF3IP3Q9Y228 551 aa21.17■□□□□ 0.98
SHKBP1-221ENST00000599833 SF3B1O75533 1304 aaKnown RBP eCLIP21.17■□□□□ 0.98
SHKBP1-221ENST00000599833 I3L4J1 428 aa21.16■□□□□ 0.98
SHKBP1-221ENST00000599833 PDXKO00764 312 aa21.16■□□□□ 0.98
SHKBP1-221ENST00000599833 TADA2AO75478 443 aa21.16■□□□□ 0.98
SHKBP1-221ENST00000599833 IL18RAPO95256 599 aa21.16■□□□□ 0.98
SHKBP1-221ENST00000599833 CNPP09543 421 aaKnown RBP21.16■□□□□ 0.98
SHKBP1-221ENST00000599833 FGFR3P22607 806 aa21.16■□□□□ 0.98
SHKBP1-221ENST00000599833 GLUD2P49448 558 aa21.16■□□□□ 0.98
SHKBP1-221ENST00000599833 TMEM132DQ14C87 1099 aa21.16■□□□□ 0.98
SHKBP1-221ENST00000599833 TMEM184AQ6ZMB5 413 aa21.16■□□□□ 0.98
SHKBP1-221ENST00000599833 SLC9A9Q8IVB4 645 aa21.16■□□□□ 0.98
SHKBP1-221ENST00000599833 PLEKHO2Q8TD55 490 aa21.16■□□□□ 0.98
SHKBP1-221ENST00000599833 SLC22A17Q8WUG5 538 aa21.16■□□□□ 0.98
SHKBP1-221ENST00000599833 HLA-CQ95604 372 aa21.16■□□□□ 0.98
SHKBP1-221ENST00000599833 MSLNLQ96KJ4 702 aa21.16■□□□□ 0.98
SHKBP1-221ENST00000599833 KLHL5Q96PQ7 755 aa21.16■□□□□ 0.98
SHKBP1-221ENST00000599833 CDCA3Q99618 268 aaPredicted RBP21.16■□□□□ 0.98
SHKBP1-221ENST00000599833 PDE11AQ9HCR9 933 aa21.16■□□□□ 0.98
SHKBP1-221ENST00000599833 THEGQ9P2T0 379 aa21.16■□□□□ 0.98
SHKBP1-221ENST00000599833 COG5Q9UP83 839 aa21.16■□□□□ 0.98
SHKBP1-221ENST00000599833 MTCL1Q9Y4B5 1905 aaKnown RBP21.16■□□□□ 0.98
SHKBP1-221ENST00000599833 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP21.15■□□□□ 0.98
SHKBP1-221ENST00000599833 PIRO00625 290 aa21.15■□□□□ 0.98
SHKBP1-221ENST00000599833 KINO60870 393 aaKnown RBP21.15■□□□□ 0.98
SHKBP1-221ENST00000599833 USP41Q3LFD5 358 aa21.15■□□□□ 0.98
SHKBP1-221ENST00000599833 ZNF658Q5TYW1 1059 aaPredicted RBP21.15■□□□□ 0.98
SHKBP1-221ENST00000599833 PHF6Q8IWS0 365 aaKnown RBP eCLIP21.15■□□□□ 0.98
SHKBP1-221ENST00000599833 LNX1Q8TBB1 728 aaPredicted RBP21.15■□□□□ 0.98
SHKBP1-221ENST00000599833 FAM212AQ96EL1 285 aa21.15■□□□□ 0.98
SHKBP1-221ENST00000599833 IGFLR1Q9H665 355 aa21.15■□□□□ 0.98
SHKBP1-221ENST00000599833 MAN1B1Q9UKM7 699 aa21.15■□□□□ 0.98
SHKBP1-221ENST00000599833 MAPK8IP1Q9UQF2 711 aa21.15■□□□□ 0.98
SHKBP1-221ENST00000599833 SPTLC1O15269 473 aa21.14■□□□□ 0.97
SHKBP1-221ENST00000599833 TEX28O15482 410 aa21.14■□□□□ 0.97
SHKBP1-221ENST00000599833 NCK2O43639 380 aa21.14■□□□□ 0.97
SHKBP1-221ENST00000599833 PRCPP42785 496 aa21.14■□□□□ 0.97
SHKBP1-221ENST00000599833 SKIV2LQ15477 1246 aaKnown RBP21.14■□□□□ 0.97
SHKBP1-221ENST00000599833 SNRNP35Q16560 246 aaKnown RBP21.14■□□□□ 0.97
SHKBP1-221ENST00000599833 NFIL3Q16649 462 aa21.14■□□□□ 0.97
SHKBP1-221ENST00000599833 FAM171A1Q5VUB5 890 aa21.14■□□□□ 0.97
SHKBP1-221ENST00000599833 C9orf57Q5W0N0 161 aa21.14■□□□□ 0.97
SHKBP1-221ENST00000599833 HS2ST1Q7LGA3 356 aa21.14■□□□□ 0.97
SHKBP1-221ENST00000599833 NT5DC4Q86YG4 428 aa21.14■□□□□ 0.97
SHKBP1-221ENST00000599833 XXYLT1Q8NBI6 393 aa21.14■□□□□ 0.97
SHKBP1-221ENST00000599833 PIK3R5Q8WYR1 880 aa21.14■□□□□ 0.97
SHKBP1-221ENST00000599833 SUSD3Q96L08 255 aa21.14■□□□□ 0.97
SHKBP1-221ENST00000599833 MFSD14AQ96MC6 490 aa21.14■□□□□ 0.97
SHKBP1-221ENST00000599833 MRPL17Q9NRX2 175 aaKnown RBP21.14■□□□□ 0.97
SHKBP1-221ENST00000599833 CLDND1Q9NY35 253 aa21.14■□□□□ 0.97
SHKBP1-221ENST00000599833 HCFC2Q9Y5Z7 792 aa21.14■□□□□ 0.97
SHKBP1-221ENST00000599833 C2CD2LO14523 706 aa21.13■□□□□ 0.97
SHKBP1-221ENST00000599833 TBC1D4O60343 1298 aa21.13■□□□□ 0.97
SHKBP1-221ENST00000599833 URODP06132 367 aa21.13■□□□□ 0.97
SHKBP1-221ENST00000599833 TKTP29401 623 aaKnown RBP21.13■□□□□ 0.97
SHKBP1-221ENST00000599833 CYP2J2P51589 502 aa21.13■□□□□ 0.97
SHKBP1-221ENST00000599833 CYP24A1Q07973 514 aa21.13■□□□□ 0.97
SHKBP1-221ENST00000599833 MRPL58Q14197 206 aaKnown RBP21.13■□□□□ 0.97
SHKBP1-221ENST00000599833 PRSS55Q6UWB4 352 aaPredicted RBP21.13■□□□□ 0.97
SHKBP1-221ENST00000599833 RSPO2Q6UXX9 243 aaPredicted RBP21.13■□□□□ 0.97
SHKBP1-221ENST00000599833 PDZRN4Q6ZMN7 1036 aaPredicted RBP21.13■□□□□ 0.97
SHKBP1-221ENST00000599833 C1orf127Q8N9H9 656 aa21.13■□□□□ 0.97
SHKBP1-221ENST00000599833 OR5B17Q8NGF7 314 aa21.13■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms