RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 TUBGCP4Q9UGJ1 667 aa17.57■□□□□ 0.4
TRIM28-213ENST00000598355 AGO2Q9UKV8 859 aaKnown RBP17.57■□□□□ 0.4
TRIM28-213ENST00000598355 CIZ1Q9ULV3 898 aaPredicted RBP17.57■□□□□ 0.4
TRIM28-213ENST00000598355 FAM50BQ9Y247 325 aa17.57■□□□□ 0.4
TRIM28-213ENST00000598355 LACTBL1A8MY62 500 aa17.56■□□□□ 0.4
TRIM28-213ENST00000598355 PODXLO00592 558 aa17.56■□□□□ 0.4
TRIM28-213ENST00000598355 B3GAT3O94766 335 aa17.56■□□□□ 0.4
TRIM28-213ENST00000598355 MYL1P05976 194 aa17.56■□□□□ 0.4
TRIM28-213ENST00000598355 EPCAMP16422 314 aa17.56■□□□□ 0.4
TRIM28-213ENST00000598355 FGFR3P22607 806 aa17.56■□□□□ 0.4
TRIM28-213ENST00000598355 NDUFA8P51970 172 aa17.56■□□□□ 0.4
TRIM28-213ENST00000598355 CREMQ03060 361 aa17.56■□□□□ 0.4
TRIM28-213ENST00000598355 CLUL1Q15846 466 aa17.56■□□□□ 0.4
TRIM28-213ENST00000598355 BMT2Q1RMZ1 405 aa17.56■□□□□ 0.4
TRIM28-213ENST00000598355 STXBP4Q6ZWJ1 553 aa17.56■□□□□ 0.4
TRIM28-213ENST00000598355 GRAMD1CQ8IYS0 662 aa17.56■□□□□ 0.4
TRIM28-213ENST00000598355 CEP57L1Q8IYX8 460 aa17.56■□□□□ 0.4
TRIM28-213ENST00000598355 ZNF507Q8TCN5 953 aa17.56■□□□□ 0.4
TRIM28-213ENST00000598355 HPS3Q969F9 1004 aa17.56■□□□□ 0.4
TRIM28-213ENST00000598355 PAGE5Q96GU1 130 aa17.56■□□□□ 0.4
TRIM28-213ENST00000598355 NECAB3Q96P71 396 aaPredicted RBP17.56■□□□□ 0.4
TRIM28-213ENST00000598355 TTPALQ9BTX7 342 aa17.56■□□□□ 0.4
TRIM28-213ENST00000598355 BLZF1Q9H2G9 400 aa17.56■□□□□ 0.4
TRIM28-213ENST00000598355 ASB7Q9H672 318 aa17.56■□□□□ 0.4
TRIM28-213ENST00000598355 TMEM206Q9H813 350 aa17.56■□□□□ 0.4
TRIM28-213ENST00000598355 RPF1Q9H9Y2 349 aaKnown RBP17.56■□□□□ 0.4
TRIM28-213ENST00000598355 UBQLN1Q9UMX0 589 aaKnown RBP17.56■□□□□ 0.4
TRIM28-213ENST00000598355 DERAQ9Y315 318 aa17.56■□□□□ 0.4
TRIM28-213ENST00000598355 USP15Q9Y4E8 981 aaPredicted RBP17.56■□□□□ 0.4
TRIM28-213ENST00000598355 C2CD2LO14523 706 aa17.55■□□□□ 0.4
TRIM28-213ENST00000598355 PRPF6O94906 941 aaKnown RBP17.55■□□□□ 0.4
TRIM28-213ENST00000598355 ADH1AP07327 375 aa17.55■□□□□ 0.4
TRIM28-213ENST00000598355 SYKP43405 635 aa17.55■□□□□ 0.4
TRIM28-213ENST00000598355 AFMP43652 599 aa17.55■□□□□ 0.4
TRIM28-213ENST00000598355 AARSP49588 968 aaKnown RBP eCLIP17.55■□□□□ 0.4
TRIM28-213ENST00000598355 ZP2Q05996 745 aa17.55■□□□□ 0.4
TRIM28-213ENST00000598355 LLGL2Q6P1M3 1020 aa17.55■□□□□ 0.4
TRIM28-213ENST00000598355 POMGNT1Q8WZA1 660 aa17.55■□□□□ 0.4
TRIM28-213ENST00000598355 C2CD2Q9Y426 696 aa17.55■□□□□ 0.4
TRIM28-213ENST00000598355 DOCK8Q8NF50 2099 aa17.55■□□□□ 0.4
TRIM28-213ENST00000598355 DOCK6Q96HP0 2047 aa17.54■□□□□ 0.4
TRIM28-213ENST00000598355 C19orf67A6NJJ6 358 aa17.54■□□□□ 0.4
TRIM28-213ENST00000598355 CA8P35219 290 aa17.54■□□□□ 0.4
TRIM28-213ENST00000598355 ACOT2P49753 483 aa17.54■□□□□ 0.4
TRIM28-213ENST00000598355 TPRNQ4KMQ1 711 aa17.54■□□□□ 0.4
TRIM28-213ENST00000598355 FAM171A1Q5VUB5 890 aa17.54■□□□□ 0.4
TRIM28-213ENST00000598355 SPATA1Q5VX52 437 aa17.54■□□□□ 0.4
TRIM28-213ENST00000598355 KIAA1841Q6NSI8 718 aa17.54■□□□□ 0.4
TRIM28-213ENST00000598355 PDXDC1Q6P996 788 aa17.54■□□□□ 0.4
TRIM28-213ENST00000598355 BRSK2Q8IWQ3 736 aa17.54■□□□□ 0.4
TRIM28-213ENST00000598355 ADHFE1Q8IWW8 467 aa17.54■□□□□ 0.4
TRIM28-213ENST00000598355 FSIP1Q8NA03 581 aa17.54■□□□□ 0.4
TRIM28-213ENST00000598355 LNX1Q8TBB1 728 aaPredicted RBP17.54■□□□□ 0.4
TRIM28-213ENST00000598355 SCFD1Q8WVM8 642 aa17.54■□□□□ 0.4
TRIM28-213ENST00000598355 RIN2Q8WYP3 895 aaPredicted RBP17.54■□□□□ 0.4
TRIM28-213ENST00000598355 KIF12Q96FN5 646 aa17.54■□□□□ 0.4
TRIM28-213ENST00000598355 CBWD1Q9BRT8 395 aa17.54■□□□□ 0.4
TRIM28-213ENST00000598355 KIAA0391O15091 583 aaKnown RBP17.53■□□□□ 0.4
TRIM28-213ENST00000598355 XPOTO43592 962 aaKnown RBP17.53■□□□□ 0.4
TRIM28-213ENST00000598355 TRAPPC3O43617 180 aa17.53■□□□□ 0.4
TRIM28-213ENST00000598355 NFICP08651 508 aa17.53■□□□□ 0.4
TRIM28-213ENST00000598355 KLRC2P26717 231 aa17.53■□□□□ 0.4
TRIM28-213ENST00000598355 BRCC3P46736 316 aa17.53■□□□□ 0.4
TRIM28-213ENST00000598355 ITIH3Q06033 890 aa17.53■□□□□ 0.4
TRIM28-213ENST00000598355 SPAG1Q07617 926 aa17.53■□□□□ 0.4
TRIM28-213ENST00000598355 JADE1Q6IE81 842 aa17.53■□□□□ 0.4
TRIM28-213ENST00000598355 LILRA6Q6PI73 481 aa17.53■□□□□ 0.4
TRIM28-213ENST00000598355 PRSS55Q6UWB4 352 aaPredicted RBP17.53■□□□□ 0.4
TRIM28-213ENST00000598355 TMEM130Q8N3G9 435 aa17.53■□□□□ 0.4
TRIM28-213ENST00000598355 ZSWIM2Q8NEG5 633 aa17.53■□□□□ 0.4
TRIM28-213ENST00000598355 HDAC7Q8WUI4 952 aa17.53■□□□□ 0.4
TRIM28-213ENST00000598355 SUSD3Q96L08 255 aa17.53■□□□□ 0.4
TRIM28-213ENST00000598355 FBXL18Q96ME1 805 aa17.53■□□□□ 0.4
TRIM28-213ENST00000598355 RHOBTB2Q9BYZ6 727 aa17.53■□□□□ 0.4
TRIM28-213ENST00000598355 SFXN1Q9H9B4 322 aa17.53■□□□□ 0.4
TRIM28-213ENST00000598355 CD320Q9NPF0 282 aa17.53■□□□□ 0.4
TRIM28-213ENST00000598355 MTRRQ9UBK8 725 aa17.53■□□□□ 0.4
TRIM28-213ENST00000598355 ANO9A1A5B4 782 aa17.52■□□□□ 0.4
TRIM28-213ENST00000598355 TNFRSF10AO00220 468 aa17.52■□□□□ 0.4
TRIM28-213ENST00000598355 SYN3O14994 580 aa17.52■□□□□ 0.4
TRIM28-213ENST00000598355 TGFB1I1O43294 461 aa17.52■□□□□ 0.4
TRIM28-213ENST00000598355 LDHAP00338 332 aaKnown RBP17.52■□□□□ 0.4
TRIM28-213ENST00000598355 GLUD1P00367 558 aa17.52■□□□□ 0.4
TRIM28-213ENST00000598355 TKTP29401 623 aaKnown RBP17.52■□□□□ 0.4
TRIM28-213ENST00000598355 WNT7BP56706 349 aa17.52■□□□□ 0.4
TRIM28-213ENST00000598355 CBX2Q14781 532 aaPredicted RBP17.52■□□□□ 0.4
TRIM28-213ENST00000598355 PSMD5Q16401 504 aa17.52■□□□□ 0.4
TRIM28-213ENST00000598355 KRBA2Q6ZNG9 492 aa17.52■□□□□ 0.4
TRIM28-213ENST00000598355 NT5DC4Q86YG4 428 aa17.52■□□□□ 0.4
TRIM28-213ENST00000598355 EFCAB13Q8IY85 973 aa17.52■□□□□ 0.4
TRIM28-213ENST00000598355 SYCP3Q8IZU3 236 aa17.52■□□□□ 0.4
TRIM28-213ENST00000598355 KIAA0895Q8NCT3 520 aa17.52■□□□□ 0.4
TRIM28-213ENST00000598355 CMASQ8NFW8 434 aaPredicted RBP17.52■□□□□ 0.4
TRIM28-213ENST00000598355 CLSTN3Q9BQT9 956 aa17.52■□□□□ 0.4
TRIM28-213ENST00000598355 ADAM7Q9H2U9 754 aa17.52■□□□□ 0.4
TRIM28-213ENST00000598355 BACE2Q9Y5Z0 518 aa17.52■□□□□ 0.4
TRIM28-213ENST00000598355 M0QZQ0 153 aa17.51■□□□□ 0.39
TRIM28-213ENST00000598355 EXTL3O43909 919 aa17.51■□□□□ 0.39
TRIM28-213ENST00000598355 TBC1D4O60343 1298 aa17.51■□□□□ 0.39
TRIM28-213ENST00000598355 IL18RAPO95256 599 aa17.51■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms