RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	POTEH	Q6S545	545 aa		11.53	□□□□□ -0.56
LSM4-205	ENST00000597776	MTSS1L	Q765P7	747 aa		11.53	□□□□□ -0.56
LSM4-205	ENST00000597776	ACAP3	Q96P50	834 aa		11.53	□□□□□ -0.56
LSM4-205	ENST00000597776	PNMA5	Q96PV4	448 aa		11.53	□□□□□ -0.56
LSM4-205	ENST00000597776	SLC38A7	Q9NVC3	462 aa		11.53	□□□□□ -0.56
LSM4-205	ENST00000597776	CNTN3	Q9P232	1028 aa		11.53	□□□□□ -0.56
LSM4-205	ENST00000597776	MRPS23	Q9Y3D9	190 aa	Known RBP	11.53	□□□□□ -0.56
LSM4-205	ENST00000597776	RBM19	Q9Y4C8	960 aa	Known RBP	11.53	□□□□□ -0.56
LSM4-205	ENST00000597776	NOTCH4	Q99466	2003 aa		11.53	□□□□□ -0.56
LSM4-205	ENST00000597776	FAM186A	A6NE01	2351 aa		11.52	□□□□□ -0.57
LSM4-205	ENST00000597776	NPHP3-ACAD11	A0A0J9YXS1	232 aa		11.52	□□□□□ -0.57
LSM4-205	ENST00000597776	WDR27	A2RRH5	827 aa		11.52	□□□□□ -0.57
LSM4-205	ENST00000597776	PRRG1	O14668	218 aa		11.52	□□□□□ -0.57
LSM4-205	ENST00000597776	RHO	P08100	348 aa		11.52	□□□□□ -0.57
LSM4-205	ENST00000597776	CEBPB	P17676	345 aa		11.52	□□□□□ -0.57
LSM4-205	ENST00000597776	GUCY2C	P25092	1073 aa		11.52	□□□□□ -0.57
LSM4-205	ENST00000597776	STARD6	P59095	220 aa		11.52	□□□□□ -0.57
LSM4-205	ENST00000597776	ATP2C1	P98194	919 aa	Predicted RBP	11.52	□□□□□ -0.57
LSM4-205	ENST00000597776	SLC8B1	Q6J4K2	584 aa		11.52	□□□□□ -0.57
LSM4-205	ENST00000597776	TMEM161B	Q8NDZ6	487 aa		11.52	□□□□□ -0.57
LSM4-205	ENST00000597776	MCRS1	Q96EZ8	462 aa		11.52	□□□□□ -0.57
LSM4-205	ENST00000597776	C17orf75	Q9HAS0	396 aa		11.52	□□□□□ -0.57
LSM4-205	ENST00000597776	TUBGCP4	Q9UGJ1	667 aa		11.52	□□□□□ -0.57
LSM4-205	ENST00000597776	KCNH3	Q9ULD8	1083 aa		11.52	□□□□□ -0.57
LSM4-205	ENST00000597776	MTF2	Q9Y483	593 aa	Predicted RBP	11.52	□□□□□ -0.57
LSM4-205	ENST00000597776	NUB1	Q9Y5A7	615 aa		11.52	□□□□□ -0.57
LSM4-205	ENST00000597776	SPTBN4	Q9H254	2564 aa		11.52	□□□□□ -0.57
LSM4-205	ENST00000597776	DMXL1	Q9Y485	3027 aa		11.52	□□□□□ -0.57
LSM4-205	ENST00000597776	ARHGEF37	A1IGU5	675 aa		11.51	□□□□□ -0.57
LSM4-205	ENST00000597776	VWA3A	A6NCI4	1184 aa		11.51	□□□□□ -0.57
LSM4-205	ENST00000597776	NRG2	O14511	850 aa	Predicted RBP	11.51	□□□□□ -0.57
LSM4-205	ENST00000597776	TBC1D4	O60343	1298 aa		11.51	□□□□□ -0.57
LSM4-205	ENST00000597776	ABLIM3	O94929	683 aa		11.51	□□□□□ -0.57
LSM4-205	ENST00000597776	SEC24A	O95486	1093 aa		11.51	□□□□□ -0.57
LSM4-205	ENST00000597776	LRG1	P02750	347 aa		11.51	□□□□□ -0.57
LSM4-205	ENST00000597776	SP9	P0CG40	484 aa		11.51	□□□□□ -0.57
LSM4-205	ENST00000597776	MAPT	P10636	758 aa	Known RBP	11.51	□□□□□ -0.57
LSM4-205	ENST00000597776	PLS3	P13797	630 aa		11.51	□□□□□ -0.57
LSM4-205	ENST00000597776	CD72	P21854	359 aa		11.51	□□□□□ -0.57
LSM4-205	ENST00000597776	SLC12A3	P55017	1021 aa		11.51	□□□□□ -0.57
LSM4-205	ENST00000597776	CACNB1	Q02641	598 aa	Predicted RBP	11.51	□□□□□ -0.57
LSM4-205	ENST00000597776	SPAG1	Q07617	926 aa		11.51	□□□□□ -0.57
LSM4-205	ENST00000597776	STRN3	Q13033	797 aa		11.51	□□□□□ -0.57
LSM4-205	ENST00000597776	NOLC1	Q14978	699 aa	Known RBP eCLIP	11.51	□□□□□ -0.57
LSM4-205	ENST00000597776	UBXN2B	Q14CS0	331 aa		11.51	□□□□□ -0.57
LSM4-205	ENST00000597776	MLF2	Q15773	248 aa	Predicted RBP	11.51	□□□□□ -0.57
LSM4-205	ENST00000597776	SLC10A6	Q3KNW5	377 aa		11.51	□□□□□ -0.57
LSM4-205	ENST00000597776	CTXN3	Q4LDR2	81 aa		11.51	□□□□□ -0.57
LSM4-205	ENST00000597776	SLC44A4	Q53GD3	710 aa		11.51	□□□□□ -0.57
LSM4-205	ENST00000597776	HYI	Q5T013	277 aa		11.51	□□□□□ -0.57
LSM4-205	ENST00000597776	C1orf210	Q8IVY1	113 aa		11.51	□□□□□ -0.57
LSM4-205	ENST00000597776	ZNF461	Q8TAF7	563 aa		11.51	□□□□□ -0.57
LSM4-205	ENST00000597776	KCNG4	Q8TDN1	519 aa		11.51	□□□□□ -0.57
LSM4-205	ENST00000597776	SPIRE2	Q8WWL2	714 aa		11.51	□□□□□ -0.57
LSM4-205	ENST00000597776	TCEAL4	Q96EI5	215 aa		11.51	□□□□□ -0.57
LSM4-205	ENST00000597776	SHD	Q96IW2	340 aa		11.51	□□□□□ -0.57
LSM4-205	ENST00000597776	CORO1B	Q9BR76	489 aa		11.51	□□□□□ -0.57
LSM4-205	ENST00000597776	NTPCR	Q9BSD7	190 aa	Known RBP	11.51	□□□□□ -0.57
LSM4-205	ENST00000597776	PLA2G2F	Q9BZM2	168 aa		11.51	□□□□□ -0.57
LSM4-205	ENST00000597776	HAPLN2	Q9GZV7	340 aa		11.51	□□□□□ -0.57
LSM4-205	ENST00000597776	CYP4F11	Q9HBI6	524 aa		11.51	□□□□□ -0.57
LSM4-205	ENST00000597776	DAXX	Q9UER7	740 aa	Predicted RBP	11.51	□□□□□ -0.57
LSM4-205	ENST00000597776	FBXL5	Q9UKA1	691 aa		11.51	□□□□□ -0.57
LSM4-205	ENST00000597776	GVINP1	Q7Z2Y8	2422 aa		11.51	□□□□□ -0.57
LSM4-205	ENST00000597776	KANSL1L	A0AUZ9	987 aa		11.5	□□□□□ -0.57
LSM4-205	ENST00000597776		H7C4K7	107 aa		11.5	□□□□□ -0.57
LSM4-205	ENST00000597776	SYN3	O14994	580 aa		11.5	□□□□□ -0.57
LSM4-205	ENST00000597776	TOM1L1	O75674	476 aa		11.5	□□□□□ -0.57
LSM4-205	ENST00000597776	CD2BP2	O95400	341 aa	Known RBP	11.5	□□□□□ -0.57
LSM4-205	ENST00000597776	PLA2G4B	P0C869	781 aa		11.5	□□□□□ -0.57
LSM4-205	ENST00000597776	CXCL8	P10145	99 aa		11.5	□□□□□ -0.57
LSM4-205	ENST00000597776	ATF2	P15336	505 aa		11.5	□□□□□ -0.57
LSM4-205	ENST00000597776	ELF1	P32519	619 aa		11.5	□□□□□ -0.57
LSM4-205	ENST00000597776	RPL9	P32969	192 aa	Known RBP	11.5	□□□□□ -0.57
LSM4-205	ENST00000597776	MCM4	P33991	863 aa		11.5	□□□□□ -0.57
LSM4-205	ENST00000597776	CCR2	P41597	374 aa		11.5	□□□□□ -0.57
LSM4-205	ENST00000597776	MRPL58	Q14197	206 aa	Known RBP	11.5	□□□□□ -0.57
LSM4-205	ENST00000597776	RILPL1	Q5EBL4	403 aa		11.5	□□□□□ -0.57
LSM4-205	ENST00000597776	TANGO2	Q6ICL3	276 aa		11.5	□□□□□ -0.57
LSM4-205	ENST00000597776	RTL10	Q7L3V2	364 aa		11.5	□□□□□ -0.57
LSM4-205	ENST00000597776	MAML2	Q8IZL2	1156 aa	Predicted RBP	11.5	□□□□□ -0.57
LSM4-205	ENST00000597776	SYT2	Q8N9I0	419 aa	Predicted RBP	11.5	□□□□□ -0.57
LSM4-205	ENST00000597776	TMX3	Q96JJ7	454 aa		11.5	□□□□□ -0.57
LSM4-205	ENST00000597776	SUSD3	Q96L08	255 aa		11.5	□□□□□ -0.57
LSM4-205	ENST00000597776	TBC1D32	Q96NH3	1257 aa		11.5	□□□□□ -0.57
LSM4-205	ENST00000597776	DDX23	Q9BUQ8	820 aa	Known RBP	11.5	□□□□□ -0.57
LSM4-205	ENST00000597776	TIPIN	Q9BVW5	301 aa		11.5	□□□□□ -0.57
LSM4-205	ENST00000597776	KIF3A	Q9Y496	699 aa		11.5	□□□□□ -0.57
LSM4-205	ENST00000597776	INSL5	Q9Y5Q6	135 aa		11.5	□□□□□ -0.57
LSM4-205	ENST00000597776	ZNF292	O60281	2723 aa		11.49	□□□□□ -0.57
LSM4-205	ENST00000597776	CIT	O14578	2027 aa		11.49	□□□□□ -0.57
LSM4-205	ENST00000597776	FAM170B	A6NMN3	283 aa		11.49	□□□□□ -0.57
LSM4-205	ENST00000597776	CLDN3	O15551	220 aa		11.49	□□□□□ -0.57
LSM4-205	ENST00000597776	ECI2	O75521	394 aa		11.49	□□□□□ -0.57
LSM4-205	ENST00000597776	LMNA	P02545	664 aa	Known RBP	11.49	□□□□□ -0.57
LSM4-205	ENST00000597776	PTPN2	P17706	415 aa		11.49	□□□□□ -0.57
LSM4-205	ENST00000597776	FCAR	P24071	287 aa		11.49	□□□□□ -0.57
LSM4-205	ENST00000597776	GJB2	P29033	226 aa		11.49	□□□□□ -0.57
LSM4-205	ENST00000597776	MATR3	P43243	847 aa	Known RBP eCLIP	11.49	□□□□□ -0.57
LSM4-205	ENST00000597776	GUCY2F	P51841	1108 aa		11.49	□□□□□ -0.57

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