RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 STRIP1Q5VSL9 837 aa16.23■□□□□ 0.19
UPF1-204ENST00000596842 VSTM1Q6UX27 236 aa16.23■□□□□ 0.19
UPF1-204ENST00000596842 SH3GL3Q99963 347 aa16.23■□□□□ 0.19
UPF1-204ENST00000596842 C1orf112Q9NSG2 853 aa16.23■□□□□ 0.19
UPF1-204ENST00000596842 SLTMQ9NWH9 1034 aaKnown RBP eCLIP16.23■□□□□ 0.197e-7■■■■□ 25.5
UPF1-204ENST00000596842 NINJ2Q9NZG7 142 aa16.23■□□□□ 0.19
UPF1-204ENST00000596842 CFHP08603 1231 aa16.23■□□□□ 0.19
UPF1-204ENST00000596842 VIL1P09327 827 aaKnown RBP16.23■□□□□ 0.19
UPF1-204ENST00000596842 GHRP10912 638 aa16.23■□□□□ 0.19
UPF1-204ENST00000596842 IRX1P78414 480 aaPredicted RBP16.23■□□□□ 0.19
UPF1-204ENST00000596842 SEPT7Q16181 437 aaKnown RBP16.23■□□□□ 0.19
UPF1-204ENST00000596842 RBM15Q96T37 977 aaKnown RBP eCLIP16.23■□□□□ 0.192e-7■■■□□ 16.3
UPF1-204ENST00000596842 ZNF341Q9BYN7 854 aa16.23■□□□□ 0.19
UPF1-204ENST00000596842 GOLGA8RI6L899 631 aa16.23■□□□□ 0.19
UPF1-204ENST00000596842 TARSP26639 723 aaKnown RBP16.23■□□□□ 0.19
UPF1-204ENST00000596842 ATP5DP30049 168 aa16.23■□□□□ 0.19
UPF1-204ENST00000596842 GBP1P32455 592 aa16.23■□□□□ 0.19
UPF1-204ENST00000596842 TMEM270Q6UE05 265 aa16.23■□□□□ 0.19
UPF1-204ENST00000596842 TRMT10CQ7L0Y3 403 aaKnown RBP16.23■□□□□ 0.19
UPF1-204ENST00000596842 P3H4Q92791 437 aa16.23■□□□□ 0.19
UPF1-204ENST00000596842 KLF6Q99612 283 aaPredicted RBP16.23■□□□□ 0.19
UPF1-204ENST00000596842 IDI2Q9BXS1 227 aa16.23■□□□□ 0.19
UPF1-204ENST00000596842 BANF1O75531 89 aa16.22■□□□□ 0.19
UPF1-204ENST00000596842 ADSSP30520 456 aa16.22■□□□□ 0.19
UPF1-204ENST00000596842 SESN3P58005 492 aa16.22■□□□□ 0.19
UPF1-204ENST00000596842 COPS2P61201 443 aa16.22■□□□□ 0.19
UPF1-204ENST00000596842 LACTBP83111 547 aaPredicted RBP16.22■□□□□ 0.19
UPF1-204ENST00000596842 ERICH1Q86X53 443 aa16.22■□□□□ 0.19
UPF1-204ENST00000596842 ANKMY2Q8IV38 441 aa16.22■□□□□ 0.19
UPF1-204ENST00000596842 GJD4Q96KN9 370 aaPredicted RBP16.22■□□□□ 0.19
UPF1-204ENST00000596842 ANKFY1Q9P2R3 1169 aa16.22■□□□□ 0.19
UPF1-204ENST00000596842 ACAD10Q6JQN1 1059 aa16.22■□□□□ 0.19
UPF1-204ENST00000596842 CROCCP2Q86T23 111 aa16.22■□□□□ 0.19
UPF1-204ENST00000596842 ERP27Q96DN0 273 aa16.22■□□□□ 0.19
UPF1-204ENST00000596842 TAAR1Q96RJ0 339 aa16.22■□□□□ 0.19
UPF1-204ENST00000596842 SH3BP1Q9Y3L3 701 aa16.22■□□□□ 0.19
UPF1-204ENST00000596842 POLE2P56282 527 aa16.22■□□□□ 0.19
UPF1-204ENST00000596842 SPP2Q13103 211 aa16.22■□□□□ 0.19
UPF1-204ENST00000596842 SIX1Q15475 284 aaPredicted RBP16.22■□□□□ 0.19
UPF1-204ENST00000596842 SLC12A4Q9UP95 1085 aa16.22■□□□□ 0.19
UPF1-204ENST00000596842 ARL2BPQ9Y2Y0 163 aa16.22■□□□□ 0.19
UPF1-204ENST00000596842 NHSQ6T4R5 1651 aa16.21■□□□□ 0.19
UPF1-204ENST00000596842 PIK3CDO00329 1044 aa16.21■□□□□ 0.19
UPF1-204ENST00000596842 GGPS1O95749 300 aa16.21■□□□□ 0.19
UPF1-204ENST00000596842 GZMAP12544 262 aa16.21■□□□□ 0.19
UPF1-204ENST00000596842 RFX1P22670 979 aa16.21■□□□□ 0.19
UPF1-204ENST00000596842 NPTX2P47972 431 aa16.21■□□□□ 0.19
UPF1-204ENST00000596842 ATP11AP98196 1134 aa16.21■□□□□ 0.19
UPF1-204ENST00000596842 THEMIS2Q5TEJ8 643 aa16.21■□□□□ 0.19
UPF1-204ENST00000596842 CAPRIN2Q6IMN6 1127 aaKnown RBP16.21■□□□□ 0.19
UPF1-204ENST00000596842 HOMEZQ8IX15 550 aa16.21■□□□□ 0.19
UPF1-204ENST00000596842 MASTLQ96GX5 879 aa16.21■□□□□ 0.19
UPF1-204ENST00000596842 IFT74Q96LB3 600 aa16.21■□□□□ 0.19
UPF1-204ENST00000596842 PCDHB4Q9Y5E5 795 aa16.21■□□□□ 0.19
UPF1-204ENST00000596842 CA4P22748 312 aa16.21■□□□□ 0.19
UPF1-204ENST00000596842 DLGAP5Q15398 846 aa16.21■□□□□ 0.19
UPF1-204ENST00000596842 WDR44Q5JSH3 913 aa16.21■□□□□ 0.19
UPF1-204ENST00000596842 ARHGEF18Q6ZSZ5 1173 aa16.21■□□□□ 0.19
UPF1-204ENST00000596842 SHC3Q92529 594 aa16.21■□□□□ 0.19
UPF1-204ENST00000596842 ADAM22Q9P0K1 906 aa16.21■□□□□ 0.19
UPF1-204ENST00000596842 UVRAGQ9P2Y5 699 aa16.21■□□□□ 0.19
UPF1-204ENST00000596842 DCTN4Q9UJW0 460 aa16.21■□□□□ 0.19
UPF1-204ENST00000596842 TBX20Q9UMR3 447 aa16.21■□□□□ 0.19
UPF1-204ENST00000596842 AFF2P51816 1311 aa16.21■□□□□ 0.19
UPF1-204ENST00000596842 ITIH2P19823 946 aa16.21■□□□□ 0.18
UPF1-204ENST00000596842 PCK1P35558 622 aa16.21■□□□□ 0.18
UPF1-204ENST00000596842 NOP14P78316 857 aaKnown RBP16.21■□□□□ 0.18
UPF1-204ENST00000596842 TKFCQ3LXA3 575 aa16.21■□□□□ 0.18
UPF1-204ENST00000596842 BTNL9Q6UXG8 535 aa16.21■□□□□ 0.18
UPF1-204ENST00000596842 GLIS1Q8NBF1 620 aa16.21■□□□□ 0.18
UPF1-204ENST00000596842 C12orf65Q9H3J6 166 aaKnown RBP16.21■□□□□ 0.18
UPF1-204ENST00000596842 HAO1Q9UJM8 370 aa16.21■□□□□ 0.18
UPF1-204ENST00000596842 PIK3CAP42336 1068 aa16.2■□□□□ 0.18
UPF1-204ENST00000596842 FASTKD3Q14CZ7 662 aaKnown RBP16.2■□□□□ 0.18
UPF1-204ENST00000596842 SETDB1Q15047 1291 aa16.2■□□□□ 0.18
UPF1-204ENST00000596842 OGFOD1Q8N543 542 aa16.2■□□□□ 0.18
UPF1-204ENST00000596842 HELQQ8TDG4 1101 aa16.2■□□□□ 0.18
UPF1-204ENST00000596842 CD101Q93033 1021 aa16.2■□□□□ 0.18
UPF1-204ENST00000596842 TRAIPQ9BWF2 469 aa16.2■□□□□ 0.18
UPF1-204ENST00000596842 C21orf2O43822 256 aa16.2■□□□□ 0.18
UPF1-204ENST00000596842 TAS2R40P59535 323 aa16.2■□□□□ 0.18
UPF1-204ENST00000596842 SLC9A9Q8IVB4 645 aa16.2■□□□□ 0.18
UPF1-204ENST00000596842 CEP120Q8N960 986 aa16.2■□□□□ 0.18
UPF1-204ENST00000596842 SUPT20HQ8NEM7 779 aa16.2■□□□□ 0.18
UPF1-204ENST00000596842 ATL2Q8NHH9 583 aa16.2■□□□□ 0.18
UPF1-204ENST00000596842 SERPINB12Q96P63 405 aa16.2■□□□□ 0.18
UPF1-204ENST00000596842 OSBPL8Q9BZF1 889 aa16.2■□□□□ 0.18
UPF1-204ENST00000596842 DCLK3Q9C098 648 aa16.2■□□□□ 0.18
UPF1-204ENST00000596842 FHDC1Q9C0D6 1143 aaPredicted RBP16.2■□□□□ 0.18
UPF1-204ENST00000596842 EXOC7Q9UPT5 735 aa16.2■□□□□ 0.18
UPF1-204ENST00000596842 TMX2Q9Y320 296 aa16.2■□□□□ 0.18
UPF1-204ENST00000596842 UBE4BO95155 1302 aa16.2■□□□□ 0.18
UPF1-204ENST00000596842 TRAF1Q13077 416 aa16.2■□□□□ 0.18
UPF1-204ENST00000596842 GPS1Q13098 491 aa16.2■□□□□ 0.18
UPF1-204ENST00000596842 ZBED8Q8IZ13 594 aa16.2■□□□□ 0.18
UPF1-204ENST00000596842 FBF1Q8TES7 1133 aa16.2■□□□□ 0.18
UPF1-204ENST00000596842 A1CFQ9NQ94 594 aaKnown RBP16.2■□□□□ 0.18
UPF1-204ENST00000596842 SAE1Q9UBE0 346 aaPredicted RBP16.2■□□□□ 0.18
UPF1-204ENST00000596842 SEPT9Q9UHD8 586 aaPredicted RBP16.2■□□□□ 0.18
UPF1-204ENST00000596842 BTAF1O14981 1849 aa16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms