RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 ZDHHC14Q8IZN3 488 aa16.63■□□□□ 0.25
TRIM28-203ENST00000593582 FEZF2Q8TBJ5 459 aa16.63■□□□□ 0.25
TRIM28-203ENST00000593582 KCNG4Q8TDN1 519 aa16.63■□□□□ 0.25
TRIM28-203ENST00000593582 SMG7Q92540 1137 aaKnown RBP16.63■□□□□ 0.25
TRIM28-203ENST00000593582 HVCN1Q96D96 273 aa16.63■□□□□ 0.25
TRIM28-203ENST00000593582 DNAJC19Q96DA6 116 aa16.63■□□□□ 0.25
TRIM28-203ENST00000593582 KIF12Q96FN5 646 aa16.63■□□□□ 0.25
TRIM28-203ENST00000593582 TSPAN18Q96SJ8 248 aa16.63■□□□□ 0.25
TRIM28-203ENST00000593582 PIDD1Q9HB75 910 aa16.63■□□□□ 0.25
TRIM28-203ENST00000593582 MTRRQ9UBK8 725 aa16.63■□□□□ 0.25
TRIM28-203ENST00000593582 TUBGCP4Q9UGJ1 667 aa16.63■□□□□ 0.25
TRIM28-203ENST00000593582 HCN4Q9Y3Q4 1203 aa16.63■□□□□ 0.25
TRIM28-203ENST00000593582 SYN3O14994 580 aa16.62■□□□□ 0.25
TRIM28-203ENST00000593582 XPOTO43592 962 aaKnown RBP16.62■□□□□ 0.25
TRIM28-203ENST00000593582 FAM189A1O60320 539 aa16.62■□□□□ 0.25
TRIM28-203ENST00000593582 OR1D2P34982 312 aa16.62■□□□□ 0.25
TRIM28-203ENST00000593582 SPAG1Q07617 926 aa16.62■□□□□ 0.25
TRIM28-203ENST00000593582 RAB33AQ14088 237 aa16.62■□□□□ 0.25
TRIM28-203ENST00000593582 ENOX2Q16206 610 aaKnown RBP16.62■□□□□ 0.25
TRIM28-203ENST00000593582 ZBTB41Q5SVQ8 909 aa16.62■□□□□ 0.25
TRIM28-203ENST00000593582 ADALQ6DHV7 355 aa16.62■□□□□ 0.25
TRIM28-203ENST00000593582 TRIM67Q6ZTA4 783 aa16.62■□□□□ 0.25
TRIM28-203ENST00000593582 STAMQ92783 540 aa16.62■□□□□ 0.25
TRIM28-203ENST00000593582 PRKD2Q9BZL6 878 aa16.62■□□□□ 0.25
TRIM28-203ENST00000593582 LRRC27Q9C0I9 530 aa16.62■□□□□ 0.25
TRIM28-203ENST00000593582 WDR6Q9NNW5 1121 aaKnown RBP16.62■□□□□ 0.25
TRIM28-203ENST00000593582 TBC1D7Q9P0N9 293 aa16.62■□□□□ 0.25
TRIM28-203ENST00000593582 RAPGEFL1Q9UHV5 662 aa16.62■□□□□ 0.25
TRIM28-203ENST00000593582 FBXW11Q9UKB1 542 aa16.62■□□□□ 0.25
TRIM28-203ENST00000593582 UBQLN1Q9UMX0 589 aaKnown RBP16.62■□□□□ 0.25
TRIM28-203ENST00000593582 EXOC7Q9UPT5 735 aa16.62■□□□□ 0.25
TRIM28-203ENST00000593582 BACE2Q9Y5Z0 518 aa16.62■□□□□ 0.25
TRIM28-203ENST00000593582 CDY1Q9Y6F8 540 aa16.62■□□□□ 0.25
TRIM28-203ENST00000593582 LACTBL1A8MY62 500 aa16.61■□□□□ 0.25
TRIM28-203ENST00000593582 ADAM12O43184 909 aa16.61■□□□□ 0.25
TRIM28-203ENST00000593582 ZMYND10O75800 440 aa16.61■□□□□ 0.25
TRIM28-203ENST00000593582 GCNT3O95395 438 aa16.61■□□□□ 0.25
TRIM28-203ENST00000593582 PAPLNO95428 1278 aa16.61■□□□□ 0.25
TRIM28-203ENST00000593582 CYP3A5P20815 502 aa16.61■□□□□ 0.25
TRIM28-203ENST00000593582 MCM4P33991 863 aa16.61■□□□□ 0.25
TRIM28-203ENST00000593582 MTMR3Q13615 1198 aa16.61■□□□□ 0.25
TRIM28-203ENST00000593582 CD302Q8IX05 232 aa16.61■□□□□ 0.25
TRIM28-203ENST00000593582 ZNF707Q96C28 371 aaPredicted RBP16.61■□□□□ 0.25
TRIM28-203ENST00000593582 FAM212AQ96EL1 285 aa16.61■□□□□ 0.25
TRIM28-203ENST00000593582 TNMDQ9H2S6 317 aa16.61■□□□□ 0.25
TRIM28-203ENST00000593582 CUEDC2Q9H467 287 aa16.61■□□□□ 0.25
TRIM28-203ENST00000593582 OLFML3Q9NRN5 406 aa16.61■□□□□ 0.25
TRIM28-203ENST00000593582 PANK4Q9NVE7 773 aa16.61■□□□□ 0.25
TRIM28-203ENST00000593582 LIMD1Q9UGP4 676 aa16.61■□□□□ 0.25
TRIM28-203ENST00000593582 CPSF3Q9UKF6 684 aaKnown RBP16.61■□□□□ 0.25
TRIM28-203ENST00000593582 CFAP45Q9UL16 551 aa16.61■□□□□ 0.25
TRIM28-203ENST00000593582 SORCS3Q9UPU3 1222 aa16.61■□□□□ 0.25
TRIM28-203ENST00000593582 PCDHB13Q9Y5F0 798 aa16.61■□□□□ 0.25
TRIM28-203ENST00000593582 CLUHO75153 1309 aa16.61■□□□□ 0.25
TRIM28-203ENST00000593582 PLXNA3P51805 1871 aa16.61■□□□□ 0.25
TRIM28-203ENST00000593582 FRMD3A2A2Y4 597 aa16.6■□□□□ 0.25
TRIM28-203ENST00000593582 ANKRD63C9JTQ0 380 aa16.6■□□□□ 0.25
TRIM28-203ENST00000593582 H7C4K7 107 aa16.6■□□□□ 0.25
TRIM28-203ENST00000593582 PPP1R37O75864 691 aa16.6■□□□□ 0.25
TRIM28-203ENST00000593582 C8AP07357 584 aa16.6■□□□□ 0.25
TRIM28-203ENST00000593582 ADRB2P07550 413 aa16.6■□□□□ 0.25
TRIM28-203ENST00000593582 HNRNPA1P09651 372 aaKnown RBP eCLIP16.6■□□□□ 0.25
TRIM28-203ENST00000593582 ME1P48163 572 aa16.6■□□□□ 0.25
TRIM28-203ENST00000593582 ACOT2P49753 483 aa16.6■□□□□ 0.25
TRIM28-203ENST00000593582 AMPD3Q01432 767 aa16.6■□□□□ 0.25
TRIM28-203ENST00000593582 SIGLEC14Q08ET2 396 aa16.6■□□□□ 0.25
TRIM28-203ENST00000593582 ALCAMQ13740 583 aa16.6■□□□□ 0.25
TRIM28-203ENST00000593582 PKP1Q13835 747 aa16.6■□□□□ 0.25
TRIM28-203ENST00000593582 POSTNQ15063 836 aa16.6■□□□□ 0.25
TRIM28-203ENST00000593582 ZBTB6Q15916 424 aa16.6■□□□□ 0.25
TRIM28-203ENST00000593582 PPM1LQ5SGD2 360 aa16.6■□□□□ 0.25
TRIM28-203ENST00000593582 VARS2Q5ST30 1063 aaKnown RBP16.6■□□□□ 0.25
TRIM28-203ENST00000593582 HFE2Q6ZVN8 426 aa16.6■□□□□ 0.25
TRIM28-203ENST00000593582 CCDC65Q8IXS2 484 aa16.6■□□□□ 0.25
TRIM28-203ENST00000593582 UBALD2Q8IYN6 164 aa16.6■□□□□ 0.25
TRIM28-203ENST00000593582 IQUBQ8NA54 791 aa16.6■□□□□ 0.25
TRIM28-203ENST00000593582 APPL2Q8NEU8 664 aa16.6■□□□□ 0.25
TRIM28-203ENST00000593582 POMGNT1Q8WZA1 660 aa16.6■□□□□ 0.25
TRIM28-203ENST00000593582 SUSD3Q96L08 255 aa16.6■□□□□ 0.25
TRIM28-203ENST00000593582 MFSD14AQ96MC6 490 aa16.6■□□□□ 0.25
TRIM28-203ENST00000593582 ACCSQ96QU6 501 aa16.6■□□□□ 0.25
TRIM28-203ENST00000593582 STRA6Q9BX79 667 aa16.6■□□□□ 0.25
TRIM28-203ENST00000593582 AGO2Q9UKV8 859 aaKnown RBP16.6■□□□□ 0.25
TRIM28-203ENST00000593582 STYXL1Q9Y6J8 313 aa16.6■□□□□ 0.25
TRIM28-203ENST00000593582 TRIP11Q15643 1979 aa16.6■□□□□ 0.25
TRIM28-203ENST00000593582 CITO14578 2027 aa16.6■□□□□ 0.25
TRIM28-203ENST00000593582 TMEM221A6NGB7 291 aa16.59■□□□□ 0.25
TRIM28-203ENST00000593582 TISP43B9A030 160 aa16.59■□□□□ 0.25
TRIM28-203ENST00000593582 M0R296 226 aa16.59■□□□□ 0.25
TRIM28-203ENST00000593582 ASGR2P07307 311 aa16.59■□□□□ 0.25
TRIM28-203ENST00000593582 LRPAP1P30533 357 aa16.59■□□□□ 0.25
TRIM28-203ENST00000593582 HOXA9P31269 272 aa16.59■□□□□ 0.25
TRIM28-203ENST00000593582 E2F4Q16254 413 aa16.59■□□□□ 0.25
TRIM28-203ENST00000593582 UVSSAQ2YD98 709 aa16.59■□□□□ 0.25
TRIM28-203ENST00000593582 AXDND1Q5T1B0 1012 aaPredicted RBP16.59■□□□□ 0.25
TRIM28-203ENST00000593582 L1TD1Q5T7N2 865 aaKnown RBP16.59■□□□□ 0.25
TRIM28-203ENST00000593582 SHC4Q6S5L8 630 aa16.59■□□□□ 0.25
TRIM28-203ENST00000593582 RSPO2Q6UXX9 243 aaPredicted RBP16.59■□□□□ 0.25
TRIM28-203ENST00000593582 RTL10Q7L3V2 364 aa16.59■□□□□ 0.25
TRIM28-203ENST00000593582 SYCP3Q8IZU3 236 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms