RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 PCDHB13Q9Y5F0 798 aa11.46□□□□□ -0.57
LIG3-212ENST00000590181 ATP6V1DQ9Y5K8 247 aa11.46□□□□□ -0.57
LIG3-212ENST00000590181 PATJQ8NI35 1801 aa11.46□□□□□ -0.58
LIG3-212ENST00000590181 KMT2BQ9UMN6 2715 aaPredicted RBP11.45□□□□□ -0.58
LIG3-212ENST00000590181 TTLL13PA6NNM8 815 aa11.45□□□□□ -0.58
LIG3-212ENST00000590181 SFI1A8K8P3 1242 aa11.45□□□□□ -0.58
LIG3-212ENST00000590181 H7C4K7 107 aa11.45□□□□□ -0.58
LIG3-212ENST00000590181 ABLIM1O14639 778 aa11.45□□□□□ -0.58
LIG3-212ENST00000590181 HNRNPDLO14979 420 aaKnown RBP11.45□□□□□ -0.58
LIG3-212ENST00000590181 KIAA0391O15091 583 aaKnown RBP11.45□□□□□ -0.58
LIG3-212ENST00000590181 SPTLC2O15270 562 aa11.45□□□□□ -0.58
LIG3-212ENST00000590181 OGTO15294 1046 aa11.45□□□□□ -0.58
LIG3-212ENST00000590181 TEX28O15482 410 aa11.45□□□□□ -0.58
LIG3-212ENST00000590181 B4GALT3O60512 393 aa11.45□□□□□ -0.58
LIG3-212ENST00000590181 B3GAT3O94766 335 aa11.45□□□□□ -0.58
LIG3-212ENST00000590181 LDHAP00338 332 aaKnown RBP11.45□□□□□ -0.58
LIG3-212ENST00000590181 ZSCAN22P10073 491 aaPredicted RBP11.45□□□□□ -0.58
LIG3-212ENST00000590181 FGFR3P22607 806 aa11.45□□□□□ -0.58
LIG3-212ENST00000590181 HOXA9P31269 272 aa11.45□□□□□ -0.58
LIG3-212ENST00000590181 LIG4P49917 911 aa11.45□□□□□ -0.58
LIG3-212ENST00000590181 KARSQ15046 597 aaKnown RBP11.45□□□□□ -0.58
LIG3-212ENST00000590181 STK38Q15208 465 aa11.45□□□□□ -0.58
LIG3-212ENST00000590181 ANGPT1Q15389 498 aa11.45□□□□□ -0.58
LIG3-212ENST00000590181 EEF1DP3Q658K8 133 aa11.45□□□□□ -0.58
LIG3-212ENST00000590181 KANK3Q6NY19 840 aa11.45□□□□□ -0.58
LIG3-212ENST00000590181 TMC5Q6UXY8 1006 aa11.45□□□□□ -0.58
LIG3-212ENST00000590181 CCDC149Q6ZUS6 474 aa11.45□□□□□ -0.58
LIG3-212ENST00000590181 TAS1R3Q7RTX0 852 aa11.45□□□□□ -0.58
LIG3-212ENST00000590181 ZNF720Q7Z2F6 126 aa11.45□□□□□ -0.58
LIG3-212ENST00000590181 CDR2LQ86X02 465 aaPredicted RBP11.45□□□□□ -0.58
LIG3-212ENST00000590181 NT5DC4Q86YG4 428 aa11.45□□□□□ -0.58
LIG3-212ENST00000590181 IQUBQ8NA54 791 aa11.45□□□□□ -0.58
LIG3-212ENST00000590181 LINC00301Q8NCQ3 95 aa11.45□□□□□ -0.58
LIG3-212ENST00000590181 BICD1Q96G01 975 aa11.45□□□□□ -0.58
LIG3-212ENST00000590181 EPSTI1Q96J88 318 aa11.45□□□□□ -0.58
LIG3-212ENST00000590181 KIFC3Q9BVG8 833 aa11.45□□□□□ -0.58
LIG3-212ENST00000590181 GPR62Q9BZJ7 368 aa11.45□□□□□ -0.58
LIG3-212ENST00000590181 ASB7Q9H672 318 aa11.45□□□□□ -0.58
LIG3-212ENST00000590181 OLFML3Q9NRN5 406 aa11.45□□□□□ -0.58
LIG3-212ENST00000590181 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.45□□□□□ -0.58
LIG3-212ENST00000590181 FBXL21Q9UKT6 434 aa11.45□□□□□ -0.58
LIG3-212ENST00000590181 GTF3C3Q9Y5Q9 886 aa11.45□□□□□ -0.58
LIG3-212ENST00000590181 BACE2Q9Y5Z0 518 aa11.45□□□□□ -0.58
LIG3-212ENST00000590181 STYXL1Q9Y6J8 313 aa11.45□□□□□ -0.58
LIG3-212ENST00000590181 DOCK8Q8NF50 2099 aa11.45□□□□□ -0.58
LIG3-212ENST00000590181 MYH15Q9Y2K3 1946 aa11.45□□□□□ -0.58
LIG3-212ENST00000590181 CUTAO60888 179 aa11.44□□□□□ -0.58
LIG3-212ENST00000590181 MARCKSP29966 332 aaPredicted RBP11.44□□□□□ -0.58
LIG3-212ENST00000590181 STAT6P42226 847 aa11.44□□□□□ -0.58
LIG3-212ENST00000590181 MATR3P43243 847 aaKnown RBP eCLIP11.44□□□□□ -0.58
LIG3-212ENST00000590181 SNRPFP62306 86 aaKnown RBP11.44□□□□□ -0.58
LIG3-212ENST00000590181 RAB33AQ14088 237 aa11.44□□□□□ -0.58
LIG3-212ENST00000590181 MCM6Q14566 821 aa11.44□□□□□ -0.58
LIG3-212ENST00000590181 FAM171A1Q5VUB5 890 aa11.44□□□□□ -0.58
LIG3-212ENST00000590181 CNNM4Q6P4Q7 775 aa11.44□□□□□ -0.58
LIG3-212ENST00000590181 LILRA6Q6PI73 481 aa11.44□□□□□ -0.58
LIG3-212ENST00000590181 MAP4K3Q8IVH8 894 aa11.44□□□□□ -0.58
LIG3-212ENST00000590181 SIX5Q8N196 739 aa11.44□□□□□ -0.58
LIG3-212ENST00000590181 APPL2Q8NEU8 664 aa11.44□□□□□ -0.58
LIG3-212ENST00000590181 FEZF2Q8TBJ5 459 aa11.44□□□□□ -0.58
LIG3-212ENST00000590181 RIN2Q8WYP3 895 aaPredicted RBP11.44□□□□□ -0.58
LIG3-212ENST00000590181 PLIN2Q99541 437 aa11.44□□□□□ -0.58
LIG3-212ENST00000590181 TNMDQ9H2S6 317 aa11.44□□□□□ -0.58
LIG3-212ENST00000590181 UBQLN1Q9UMX0 589 aaKnown RBP11.44□□□□□ -0.58
LIG3-212ENST00000590181 DUSP12Q9UNI6 340 aa11.44□□□□□ -0.58
LIG3-212ENST00000590181 CACNA1BQ00975 2339 aa11.44□□□□□ -0.58
LIG3-212ENST00000590181 OTOGLQ3ZCN5 2332 aa11.44□□□□□ -0.58
LIG3-212ENST00000590181 PDCD11Q14690 1871 aaKnown RBP11.43□□□□□ -0.58
LIG3-212ENST00000590181 A0A0B4J269 797 aa11.43□□□□□ -0.58
LIG3-212ENST00000590181 TTC26A0AVF1 554 aa11.43□□□□□ -0.58
LIG3-212ENST00000590181 K7ENM7 598 aa11.43□□□□□ -0.58
LIG3-212ENST00000590181 PI15O43692 258 aa11.43□□□□□ -0.58
LIG3-212ENST00000590181 NPR3P17342 541 aa11.43□□□□□ -0.58
LIG3-212ENST00000590181 RFX1P22670 979 aa11.43□□□□□ -0.58
LIG3-212ENST00000590181 LRPAP1P30533 357 aa11.43□□□□□ -0.58
LIG3-212ENST00000590181 PPP2R3AQ06190 1150 aa11.43□□□□□ -0.58
LIG3-212ENST00000590181 RAD51AP2Q09MP3 1159 aa11.43□□□□□ -0.58
LIG3-212ENST00000590181 TDGQ13569 410 aa11.43□□□□□ -0.58
LIG3-212ENST00000590181 TPGS2Q68CL5 300 aa11.43□□□□□ -0.58
LIG3-212ENST00000590181 CCDC65Q8IXS2 484 aa11.43□□□□□ -0.58
LIG3-212ENST00000590181 DTWD2Q8NBA8 298 aa11.43□□□□□ -0.58
LIG3-212ENST00000590181 DDX12PQ92771 950 aa11.43□□□□□ -0.58
LIG3-212ENST00000590181 USP28Q96RU2 1077 aa11.43□□□□□ -0.58
LIG3-212ENST00000590181 RTP3Q9BQQ7 232 aa11.43□□□□□ -0.58
LIG3-212ENST00000590181 TMEM206Q9H813 350 aa11.43□□□□□ -0.58
LIG3-212ENST00000590181 RPF1Q9H9Y2 349 aaKnown RBP11.43□□□□□ -0.58
LIG3-212ENST00000590181 WDR6Q9NNW5 1121 aaKnown RBP11.43□□□□□ -0.58
LIG3-212ENST00000590181 IGSF9Q9P2J2 1179 aa11.43□□□□□ -0.58
LIG3-212ENST00000590181 USP25Q9UHP3 1055 aa11.43□□□□□ -0.58
LIG3-212ENST00000590181 CCDC195A0A1B0GUA6 201 aa11.42□□□□□ -0.58
LIG3-212ENST00000590181 MED19A0JLT2 244 aaPredicted RBP11.42□□□□□ -0.58
LIG3-212ENST00000590181 FRMD3A2A2Y4 597 aa11.42□□□□□ -0.58
LIG3-212ENST00000590181 CASTOR2A6NHX0 329 aa11.42□□□□□ -0.58
LIG3-212ENST00000590181 C2CD2LO14523 706 aa11.42□□□□□ -0.58
LIG3-212ENST00000590181 TGM5O43548 720 aa11.42□□□□□ -0.58
LIG3-212ENST00000590181 XYLBO75191 536 aa11.42□□□□□ -0.58
LIG3-212ENST00000590181 KIF4AO95239 1232 aa11.42□□□□□ -0.58
LIG3-212ENST00000590181 EDN1P05305 212 aa11.42□□□□□ -0.58
LIG3-212ENST00000590181 MYL1P05976 194 aa11.42□□□□□ -0.58
LIG3-212ENST00000590181 CLCNKBP51801 687 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms