RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 CDKL5O76039 1030 aa4.56□□□□□ -1.68
LIG3-211ENST00000588713 CIAO1O76071 339 aa4.56□□□□□ -1.68
LIG3-211ENST00000588713 PRPF6O94906 941 aaKnown RBP4.56□□□□□ -1.68
LIG3-211ENST00000588713 CCDC172P0C7W6 258 aa4.56□□□□□ -1.68
LIG3-211ENST00000588713 CTAGE8P0CG41 777 aa4.56□□□□□ -1.68
LIG3-211ENST00000588713 ATP1A3P13637 1013 aa4.56□□□□□ -1.68
LIG3-211ENST00000588713 NDUFV2P19404 249 aa4.56□□□□□ -1.68
LIG3-211ENST00000588713 PPM1AP35813 382 aa4.56□□□□□ -1.68
LIG3-211ENST00000588713 IL15P40933 162 aaPredicted RBP4.56□□□□□ -1.68
LIG3-211ENST00000588713 MAPK8P45983 427 aa4.56□□□□□ -1.68
LIG3-211ENST00000588713 ALDH7A1P49419 539 aaKnown RBP4.56□□□□□ -1.68
LIG3-211ENST00000588713 GYS2P54840 703 aa4.56□□□□□ -1.68
LIG3-211ENST00000588713 GSCP56915 257 aaPredicted RBP4.56□□□□□ -1.68
LIG3-211ENST00000588713 SETQ01105 290 aaPredicted RBP4.56□□□□□ -1.68
LIG3-211ENST00000588713 CKAP4Q07065 602 aaKnown RBP4.56□□□□□ -1.68
LIG3-211ENST00000588713 KCNH2Q12809 1159 aa4.56□□□□□ -1.68
LIG3-211ENST00000588713 TRDNQ13061 729 aa4.56□□□□□ -1.68
LIG3-211ENST00000588713 WTAPQ15007 396 aa4.56□□□□□ -1.68
LIG3-211ENST00000588713 SLC39A14Q15043 492 aa4.56□□□□□ -1.68
LIG3-211ENST00000588713 PTPRNQ16849 979 aa4.56□□□□□ -1.68
LIG3-211ENST00000588713 TUBB8Q3ZCM7 444 aa4.56□□□□□ -1.68
LIG3-211ENST00000588713 TNNI3KQ59H18 835 aa4.56□□□□□ -1.68
LIG3-211ENST00000588713 DNAJC21Q5F1R6 531 aaKnown RBP4.56□□□□□ -1.68
LIG3-211ENST00000588713 NT5DC1Q5TFE4 455 aa4.56□□□□□ -1.68
LIG3-211ENST00000588713 RESP18Q5W5W9 173 aa4.56□□□□□ -1.68
LIG3-211ENST00000588713 KCNT2Q6UVM3 1135 aa4.56□□□□□ -1.68
LIG3-211ENST00000588713 LRRC31Q6UY01 552 aa4.56□□□□□ -1.68
LIG3-211ENST00000588713 SLC30A10Q6XR72 485 aa4.56□□□□□ -1.68
LIG3-211ENST00000588713 ZNF574Q6ZN55 896 aaPredicted RBP4.56□□□□□ -1.68
LIG3-211ENST00000588713 C15orf39Q6ZRI6 1047 aa4.56□□□□□ -1.68
LIG3-211ENST00000588713 TOGARAM2Q6ZUX3 1019 aa4.56□□□□□ -1.68
LIG3-211ENST00000588713 GPR155Q7Z3F1 870 aa4.56□□□□□ -1.68
LIG3-211ENST00000588713 CTAGE6Q86UF2 777 aa4.56□□□□□ -1.68
LIG3-211ENST00000588713 RTN4RL1Q86UN2 441 aaPredicted RBP4.56□□□□□ -1.68
LIG3-211ENST00000588713 CNGA4Q8IV77 575 aa4.56□□□□□ -1.68
LIG3-211ENST00000588713 CTAGE4Q8IX94 777 aa4.56□□□□□ -1.68
LIG3-211ENST00000588713 NPAS3Q8IXF0 933 aa4.56□□□□□ -1.68
LIG3-211ENST00000588713 CNPY4Q8N129 248 aa4.56□□□□□ -1.68
LIG3-211ENST00000588713 KBTBD3Q8NAB2 608 aa4.56□□□□□ -1.68
LIG3-211ENST00000588713 MLKLQ8NB16 471 aa4.56□□□□□ -1.68
LIG3-211ENST00000588713 PRR7Q8TB68 274 aa4.56□□□□□ -1.68
LIG3-211ENST00000588713 ENOX1Q8TC92 643 aaKnown RBP4.56□□□□□ -1.68
LIG3-211ENST00000588713 STAG1Q8WVM7 1258 aa4.56□□□□□ -1.68
LIG3-211ENST00000588713 PHKBQ93100 1093 aa4.56□□□□□ -1.68
LIG3-211ENST00000588713 ZNF558Q96NG5 402 aa4.56□□□□□ -1.68
LIG3-211ENST00000588713 PNKPQ96T60 521 aa4.56□□□□□ -1.68
LIG3-211ENST00000588713 NAPGQ99747 312 aaPredicted RBP4.56□□□□□ -1.68
LIG3-211ENST00000588713 KXD1Q9BQD3 176 aa4.56□□□□□ -1.68
LIG3-211ENST00000588713 CWH43Q9H720 699 aa4.56□□□□□ -1.68
LIG3-211ENST00000588713 FAM204AQ9H8W3 233 aa4.56□□□□□ -1.68
LIG3-211ENST00000588713 EHMT1Q9H9B1 1298 aa4.56□□□□□ -1.68
LIG3-211ENST00000588713 MRPL44Q9H9J2 332 aaKnown RBP4.56□□□□□ -1.68
LIG3-211ENST00000588713 LMAN1LQ9HAT1 526 aa4.56□□□□□ -1.68
LIG3-211ENST00000588713 PIDD1Q9HB75 910 aa4.56□□□□□ -1.68
LIG3-211ENST00000588713 SLC24A3Q9HC58 644 aa4.56□□□□□ -1.68
LIG3-211ENST00000588713 COPRSQ9NQ92 184 aa4.56□□□□□ -1.68
LIG3-211ENST00000588713 EVA1BQ9NVM1 165 aa4.56□□□□□ -1.68
LIG3-211ENST00000588713 SWAP70Q9UH65 585 aa4.56□□□□□ -1.68
LIG3-211ENST00000588713 FEM1BQ9UK73 627 aa4.56□□□□□ -1.68
LIG3-211ENST00000588713 CCPG1Q9ULG6 757 aa4.56□□□□□ -1.68
LIG3-211ENST00000588713 FPGT-TNNI3KV9GXZ4 949 aa4.56□□□□□ -1.68
LIG3-211ENST00000588713 LAMA1P25391 3075 aa4.55□□□□□ -1.68
LIG3-211ENST00000588713 TTC3P53804 2025 aa4.55□□□□□ -1.68
LIG3-211ENST00000588713 APC2O95996 2303 aa4.55□□□□□ -1.68
LIG3-211ENST00000588713 URB1O60287 2271 aaKnown RBP4.55□□□□□ -1.68
LIG3-211ENST00000588713 GOLGA8BA8MQT2 603 aa4.55□□□□□ -1.68
LIG3-211ENST00000588713 TMCO5BA8MYB1 307 aa4.55□□□□□ -1.68
LIG3-211ENST00000588713 PATE3B3GLJ2 98 aa4.55□□□□□ -1.68
LIG3-211ENST00000588713 E7EWF7 191 aa4.55□□□□□ -1.68
LIG3-211ENST00000588713 H3BM21 787 aa4.55□□□□□ -1.68
LIG3-211ENST00000588713 K7ESF4 209 aa4.55□□□□□ -1.68
LIG3-211ENST00000588713 NFIBO00712 420 aa4.55□□□□□ -1.68
LIG3-211ENST00000588713 C2CD2LO14523 706 aa4.55□□□□□ -1.68
LIG3-211ENST00000588713 INPPL1O15357 1258 aa4.55□□□□□ -1.68
LIG3-211ENST00000588713 IDH1O75874 414 aaKnown RBP4.55□□□□□ -1.68
LIG3-211ENST00000588713 ERLIN2O94905 339 aa4.55□□□□□ -1.68
LIG3-211ENST00000588713 CFBP00751 764 aa4.55□□□□□ -1.68
LIG3-211ENST00000588713 FGFR1P11362 822 aa4.55□□□□□ -1.68
LIG3-211ENST00000588713 C6P13671 934 aa4.55□□□□□ -1.68
LIG3-211ENST00000588713 FDPSP14324 419 aaKnown RBP4.55□□□□□ -1.68
LIG3-211ENST00000588713 VARSP26640 1264 aaKnown RBP4.55□□□□□ -1.68
LIG3-211ENST00000588713 ERCC5P28715 1186 aaPredicted RBP4.55□□□□□ -1.68
LIG3-211ENST00000588713 ARID4AP29374 1257 aaPredicted RBP4.55□□□□□ -1.68
LIG3-211ENST00000588713 PDIA3P30101 505 aaKnown RBP4.55□□□□□ -1.68
LIG3-211ENST00000588713 ADSSP30520 456 aa4.55□□□□□ -1.68
LIG3-211ENST00000588713 CTHP32929 405 aa4.55□□□□□ -1.68
LIG3-211ENST00000588713 PBX1P40424 430 aa4.55□□□□□ -1.68
LIG3-211ENST00000588713 METAP2P50579 478 aaKnown RBP eCLIP4.55□□□□□ -1.68
LIG3-211ENST00000588713 VSNL1P62760 191 aa4.55□□□□□ -1.68
LIG3-211ENST00000588713 CXADRP78310 365 aa4.55□□□□□ -1.68
LIG3-211ENST00000588713 AMPD2Q01433 879 aa4.55□□□□□ -1.68
LIG3-211ENST00000588713 SERINC3Q13530 473 aa4.55□□□□□ -1.68
LIG3-211ENST00000588713 UBAP2LQ14157 1087 aaKnown RBP4.55□□□□□ -1.68
LIG3-211ENST00000588713 PLCB4Q15147 1175 aa4.55□□□□□ -1.68
LIG3-211ENST00000588713 KRTAP21-3Q3LHN1 58 aa4.55□□□□□ -1.68
LIG3-211ENST00000588713 FAM26DQ5JW98 314 aa4.55□□□□□ -1.68
LIG3-211ENST00000588713 FBXO47Q5MNV8 452 aa4.55□□□□□ -1.68
LIG3-211ENST00000588713 ZMYM1Q5SVZ6 1142 aa4.55□□□□□ -1.68
LIG3-211ENST00000588713 IQCEQ6IPM2 695 aa4.55□□□□□ -1.68
LIG3-211ENST00000588713 CCDC62Q6P9F0 684 aa4.55□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms