RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 ZC2HC1CQ53FD0 456 aaPredicted RBP5.82□□□□□ -1.48
LIG3-210ENST00000588109 PERM1Q5SV97 790 aa5.82□□□□□ -1.48
LIG3-210ENST00000588109 GDF6Q6KF10 455 aaPredicted RBP5.82□□□□□ -1.48
LIG3-210ENST00000588109 TAF2Q6P1X5 1199 aa5.82□□□□□ -1.48
LIG3-210ENST00000588109 RUFY4Q6ZNE9 571 aa5.82□□□□□ -1.48
LIG3-210ENST00000588109 C8orf86Q6ZUL3 223 aa5.82□□□□□ -1.48
LIG3-210ENST00000588109 C11orf57Q6ZUT1 292 aaPredicted RBP5.82□□□□□ -1.48
LIG3-210ENST00000588109 HAUS6Q7Z4H7 955 aa5.82□□□□□ -1.48
LIG3-210ENST00000588109 SESTD1Q86VW0 696 aa5.82□□□□□ -1.48
LIG3-210ENST00000588109 KSR1Q8IVT5 923 aa5.82□□□□□ -1.48
LIG3-210ENST00000588109 NELFCDQ8IXH7 590 aa5.82□□□□□ -1.48
LIG3-210ENST00000588109 RNF149Q8NC42 400 aa5.82□□□□□ -1.48
LIG3-210ENST00000588109 KIAA0895Q8NCT3 520 aa5.82□□□□□ -1.48
LIG3-210ENST00000588109 RNF214Q8ND24 703 aa5.82□□□□□ -1.48
LIG3-210ENST00000588109 GLIS3Q8NEA6 775 aa5.82□□□□□ -1.48
LIG3-210ENST00000588109 DNAJB3Q8WWF6 145 aa5.82□□□□□ -1.48
LIG3-210ENST00000588109 NELFBQ8WX92 580 aa5.82□□□□□ -1.48
LIG3-210ENST00000588109 BSNDQ8WZ55 320 aa5.82□□□□□ -1.48
LIG3-210ENST00000588109 PLD4Q96BZ4 506 aa5.82□□□□□ -1.48
LIG3-210ENST00000588109 BICD1Q96G01 975 aa5.82□□□□□ -1.48
LIG3-210ENST00000588109 DHTKD1Q96HY7 919 aaPredicted RBP5.82□□□□□ -1.48
LIG3-210ENST00000588109 ZNF668Q96K58 619 aaPredicted RBP5.82□□□□□ -1.48
LIG3-210ENST00000588109 CITED4Q96RK1 184 aa5.82□□□□□ -1.48
LIG3-210ENST00000588109 TSG101Q99816 390 aa5.82□□□□□ -1.48
LIG3-210ENST00000588109 FUCA2Q9BTY2 467 aa5.82□□□□□ -1.48
LIG3-210ENST00000588109 SEZ6LQ9BYH1 1024 aa5.82□□□□□ -1.48
LIG3-210ENST00000588109 C2orf40Q9H1Z8 148 aa5.82□□□□□ -1.48
LIG3-210ENST00000588109 PRDM6Q9NQX0 595 aa5.82□□□□□ -1.48
LIG3-210ENST00000588109 TRMT13Q9NUP7 481 aaKnown RBP5.82□□□□□ -1.48
LIG3-210ENST00000588109 EXOC7Q9UPT5 735 aa5.82□□□□□ -1.48
LIG3-210ENST00000588109 CTNND2Q9UQB3 1225 aa5.82□□□□□ -1.48
LIG3-210ENST00000588109 SCN10AQ9Y5Y9 1956 aa5.82□□□□□ -1.48
LIG3-210ENST00000588109 GRIN2DO15399 1336 aa5.81□□□□□ -1.48
LIG3-210ENST00000588109 UBE4BO95155 1302 aa5.81□□□□□ -1.48
LIG3-210ENST00000588109 MROH7Q68CQ1 1323 aa5.81□□□□□ -1.48
LIG3-210ENST00000588109 PHLPP2Q6ZVD8 1323 aa5.81□□□□□ -1.48
LIG3-210ENST00000588109 A0A087WZ62 844 aa5.81□□□□□ -1.48
LIG3-210ENST00000588109 BICDL2A1A5D9 508 aa5.81□□□□□ -1.48
LIG3-210ENST00000588109 MBLAC1A4D2B0 266 aaPredicted RBP5.81□□□□□ -1.48
LIG3-210ENST00000588109 A6NHS1 94 aa5.81□□□□□ -1.48
LIG3-210ENST00000588109 GOLGA6L19H0YKK7 550 aa5.81□□□□□ -1.48
LIG3-210ENST00000588109 INO80B-WBP1J3KQ70 363 aa5.81□□□□□ -1.48
LIG3-210ENST00000588109 K7ERI5 159 aa5.81□□□□□ -1.48
LIG3-210ENST00000588109 EIF3DO15371 548 aaKnown RBP eCLIP5.81□□□□□ -1.48
LIG3-210ENST00000588109 TLR3O15455 904 aaKnown RBP5.81□□□□□ -1.48
LIG3-210ENST00000588109 CALUO43852 315 aaPredicted RBP5.81□□□□□ -1.48
LIG3-210ENST00000588109 PQBP1O60828 265 aaKnown RBP5.81□□□□□ -1.48
LIG3-210ENST00000588109 SMNDC1O75940 238 aaKnown RBP eCLIP5.81□□□□□ -1.48
LIG3-210ENST00000588109 RPLP2P05387 115 aaKnown RBP5.81□□□□□ -1.48
LIG3-210ENST00000588109 CTSHP09668 335 aa5.81□□□□□ -1.48
LIG3-210ENST00000588109 HOXB4P17483 251 aaPredicted RBP5.81□□□□□ -1.48
LIG3-210ENST00000588109 CAPN2P17655 700 aa5.81□□□□□ -1.48
LIG3-210ENST00000588109 SCP2P22307 547 aa5.81□□□□□ -1.48
LIG3-210ENST00000588109 ERCC5P28715 1186 aaPredicted RBP5.81□□□□□ -1.48
LIG3-210ENST00000588109 HOXC8P31273 242 aa5.81□□□□□ -1.48
LIG3-210ENST00000588109 THPOP40225 353 aa5.81□□□□□ -1.48
LIG3-210ENST00000588109 GPC3P51654 580 aa5.81□□□□□ -1.48
LIG3-210ENST00000588109 EFNA5P52803 228 aa5.81□□□□□ -1.48
LIG3-210ENST00000588109 STX17P56962 302 aa5.81□□□□□ -1.48
LIG3-210ENST00000588109 NLRP11P59045 1033 aaKnown RBP5.81□□□□□ -1.48
LIG3-210ENST00000588109 RAC1P63000 192 aa5.81□□□□□ -1.48
LIG3-210ENST00000588109 ADAM17P78536 824 aa5.81□□□□□ -1.48
LIG3-210ENST00000588109 MAPK6Q16659 721 aa5.81□□□□□ -1.48
LIG3-210ENST00000588109 KNOP1Q1ED39 458 aaKnown RBP5.81□□□□□ -1.48
LIG3-210ENST00000588109 KIZQ2M2Z5 673 aa5.81□□□□□ -1.48
LIG3-210ENST00000588109 CT47A1Q5JQC4 288 aaPredicted RBP5.81□□□□□ -1.48
LIG3-210ENST00000588109 C20orf204Q6ZNR8 217 aa5.81□□□□□ -1.48
LIG3-210ENST00000588109 HS2ST1Q7LGA3 356 aa5.81□□□□□ -1.48
LIG3-210ENST00000588109 ZNF720Q7Z2F6 126 aa5.81□□□□□ -1.48
LIG3-210ENST00000588109 SERINC5Q86VE9 423 aa5.81□□□□□ -1.48
LIG3-210ENST00000588109 ZNF410Q86VK4 478 aa5.81□□□□□ -1.48
LIG3-210ENST00000588109 KIAA0319LQ8IZA0 1049 aa5.81□□□□□ -1.48
LIG3-210ENST00000588109 ADSSL1Q8N142 457 aa5.81□□□□□ -1.48
LIG3-210ENST00000588109 NME8Q8N427 588 aa5.81□□□□□ -1.48
LIG3-210ENST00000588109 GUF1Q8N442 669 aaKnown RBP5.81□□□□□ -1.48
LIG3-210ENST00000588109 AOPEPQ8N6M6 819 aa5.81□□□□□ -1.48
LIG3-210ENST00000588109 LINC01465Q8N7H1 131 aa5.81□□□□□ -1.48
LIG3-210ENST00000588109 SCFD1Q8WVM8 642 aa5.81□□□□□ -1.48
LIG3-210ENST00000588109 P2RX5Q93086 422 aa5.81□□□□□ -1.48
LIG3-210ENST00000588109 HVCN1Q96D96 273 aa5.81□□□□□ -1.48
LIG3-210ENST00000588109 ACCSQ96QU6 501 aa5.81□□□□□ -1.48
LIG3-210ENST00000588109 FDXACB1Q9BRP7 624 aaPredicted RBP5.81□□□□□ -1.48
LIG3-210ENST00000588109 NTPCRQ9BSD7 190 aaKnown RBP5.81□□□□□ -1.48
LIG3-210ENST00000588109 FGFBP2Q9BYJ0 223 aa5.81□□□□□ -1.48
LIG3-210ENST00000588109 GCOM2Q9BZD3 368 aaPredicted RBP5.81□□□□□ -1.48
LIG3-210ENST00000588109 INO80BQ9C086 356 aaPredicted RBP5.81□□□□□ -1.48
LIG3-210ENST00000588109 TRPV6Q9H1D0 765 aa5.81□□□□□ -1.48
LIG3-210ENST00000588109 C11orf49Q9H6J7 331 aa5.81□□□□□ -1.48
LIG3-210ENST00000588109 TMEM206Q9H813 350 aa5.81□□□□□ -1.48
LIG3-210ENST00000588109 RWDD2AQ9UIY3 292 aa5.81□□□□□ -1.48
LIG3-210ENST00000588109 TBX20Q9UMR3 447 aa5.81□□□□□ -1.48
LIG3-210ENST00000588109 ADGRA3Q8IWK6 1321 aa5.8□□□□□ -1.48
LIG3-210ENST00000588109 HTTP42858 3142 aa5.8□□□□□ -1.48
LIG3-210ENST00000588109 TRIM49BA6NDI0 452 aa5.8□□□□□ -1.48
LIG3-210ENST00000588109 GOLGA6L3A6NEY3 463 aa5.8□□□□□ -1.48
LIG3-210ENST00000588109 SMTNL1A8MU46 457 aa5.8□□□□□ -1.48
LIG3-210ENST00000588109 DCDC2CA8MYV0 355 aa5.8□□□□□ -1.48
LIG3-210ENST00000588109 HNRNPDLO14979 420 aaKnown RBP5.8□□□□□ -1.48
LIG3-210ENST00000588109 B4GALT4O60513 344 aa5.8□□□□□ -1.48
LIG3-210ENST00000588109 ERLIN2O94905 339 aa5.8□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms