RNA–Protein interactions for RNA: ENST00000588059.5

VPS4B-202, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 5

Gene VPS4B, Length 1,252 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-202ENST00000588059 CLCNKBP51801 687 aa12.18□□□□□ -0.46
VPS4B-202ENST00000588059 EEF1DP3Q658K8 133 aa12.18□□□□□ -0.46
VPS4B-202ENST00000588059 SLC8B1Q6J4K2 584 aa12.18□□□□□ -0.46
VPS4B-202ENST00000588059 MAEAQ7L5Y9 396 aa12.18□□□□□ -0.46
VPS4B-202ENST00000588059 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.18□□□□□ -0.46
VPS4B-202ENST00000588059 ZBTB8OSQ8IWT0 167 aa12.18□□□□□ -0.46
VPS4B-202ENST00000588059 C3orf58Q8NDZ4 430 aa12.18□□□□□ -0.46
VPS4B-202ENST00000588059 ZNF461Q8TAF7 563 aa12.18□□□□□ -0.46
VPS4B-202ENST00000588059 BSNDQ8WZ55 320 aa12.18□□□□□ -0.46
VPS4B-202ENST00000588059 ZNF274Q96GC6 653 aaPredicted RBP12.18□□□□□ -0.46
VPS4B-202ENST00000588059 PPP1R10Q96QC0 940 aaKnown RBP12.18□□□□□ -0.46
VPS4B-202ENST00000588059 LARP6Q9BRS8 491 aaKnown RBP12.18□□□□□ -0.46
VPS4B-202ENST00000588059 GJB4Q9NTQ9 266 aa12.18□□□□□ -0.46
VPS4B-202ENST00000588059 USP20Q9Y2K6 914 aa12.18□□□□□ -0.46
VPS4B-202ENST00000588059 GDAQ9Y2T3 454 aa12.18□□□□□ -0.46
VPS4B-202ENST00000588059 ARNTLO00327 626 aa12.17□□□□□ -0.46
VPS4B-202ENST00000588059 PRRG1O14668 218 aa12.17□□□□□ -0.46
VPS4B-202ENST00000588059 MICAL2O94851 1124 aa12.17□□□□□ -0.46
VPS4B-202ENST00000588059 ABLIM3O94929 683 aa12.17□□□□□ -0.46
VPS4B-202ENST00000588059 SEC24AO95486 1093 aa12.17□□□□□ -0.46
VPS4B-202ENST00000588059 PRKCBP05771 671 aa12.17□□□□□ -0.46
VPS4B-202ENST00000588059 PSMC3P17980 439 aa12.17□□□□□ -0.46
VPS4B-202ENST00000588059 KCNA4P22459 653 aa12.17□□□□□ -0.46
VPS4B-202ENST00000588059 PMLP29590 882 aa12.17□□□□□ -0.46
VPS4B-202ENST00000588059 BRCC3P46736 316 aa12.17□□□□□ -0.46
VPS4B-202ENST00000588059 STK3Q13188 491 aa12.17□□□□□ -0.46
VPS4B-202ENST00000588059 PRPF4BQ13523 1007 aaKnown RBP12.17□□□□□ -0.46
VPS4B-202ENST00000588059 UPP1Q16831 310 aa12.17□□□□□ -0.46
VPS4B-202ENST00000588059 TMEM132AQ24JP5 1023 aa12.17□□□□□ -0.46
VPS4B-202ENST00000588059 CPLX2Q6PUV4 134 aaKnown RBP12.17□□□□□ -0.46
VPS4B-202ENST00000588059 PDZD4Q76G19 769 aaPredicted RBP12.17□□□□□ -0.46
VPS4B-202ENST00000588059 RUFY3Q7L099 469 aa12.17□□□□□ -0.46
VPS4B-202ENST00000588059 SPEM1Q8N4L4 309 aa12.17□□□□□ -0.46
VPS4B-202ENST00000588059 DEPDC1BQ8WUY9 529 aa12.17□□□□□ -0.46
VPS4B-202ENST00000588059 SMARCD2Q92925 531 aa12.17□□□□□ -0.46
VPS4B-202ENST00000588059 ZSWIM3Q96MP5 696 aa12.17□□□□□ -0.46
VPS4B-202ENST00000588059 ADPGKQ9BRR6 497 aa12.17□□□□□ -0.46
VPS4B-202ENST00000588059 CCDC113Q9H0I3 377 aa12.17□□□□□ -0.46
VPS4B-202ENST00000588059 GOLGA2P5Q9HBQ8 144 aa12.17□□□□□ -0.46
VPS4B-202ENST00000588059 RALYQ9UKM9 306 aaKnown RBP12.17□□□□□ -0.46
VPS4B-202ENST00000588059 ANGPTL2Q9UKU9 493 aa12.17□□□□□ -0.46
VPS4B-202ENST00000588059 INSL5Q9Y5Q6 135 aa12.17□□□□□ -0.46
VPS4B-202ENST00000588059 FAM208BQ5VWN6 2430 aa12.17□□□□□ -0.46
VPS4B-202ENST00000588059 SDK1Q7Z5N4 2213 aa12.17□□□□□ -0.46
VPS4B-202ENST00000588059 K7ESF4 209 aa12.16□□□□□ -0.46
VPS4B-202ENST00000588059 ZNF197O14709 1029 aa12.16□□□□□ -0.46
VPS4B-202ENST00000588059 TRAPPC3O43617 180 aa12.16□□□□□ -0.46
VPS4B-202ENST00000588059 MOSPD3O75425 235 aa12.16□□□□□ -0.46
VPS4B-202ENST00000588059 PAPSS2O95340 614 aaPredicted RBP12.16□□□□□ -0.46
VPS4B-202ENST00000588059 ATF2P15336 505 aa12.16□□□□□ -0.46
VPS4B-202ENST00000588059 CCNE1P24864 410 aa12.16□□□□□ -0.46
VPS4B-202ENST00000588059 ELF1P32519 619 aa12.16□□□□□ -0.46
VPS4B-202ENST00000588059 CNR2P34972 360 aa12.16□□□□□ -0.46
VPS4B-202ENST00000588059 VIPR2P41587 438 aa12.16□□□□□ -0.46
VPS4B-202ENST00000588059 PTGDRQ13258 359 aa12.16□□□□□ -0.46
VPS4B-202ENST00000588059 MAPK6Q16659 721 aa12.16□□□□□ -0.46
VPS4B-202ENST00000588059 WDR44Q5JSH3 913 aa12.16□□□□□ -0.46
VPS4B-202ENST00000588059 TCEAL8Q8IYN2 117 aa12.16□□□□□ -0.46
VPS4B-202ENST00000588059 FAM160A2Q8N612 972 aaPredicted RBP12.16□□□□□ -0.46
VPS4B-202ENST00000588059 MCPH1Q8NEM0 835 aa12.16□□□□□ -0.46
VPS4B-202ENST00000588059 DDX1Q92499 740 aaKnown RBP12.16□□□□□ -0.46
VPS4B-202ENST00000588059 UROC1Q96N76 676 aa12.16□□□□□ -0.46
VPS4B-202ENST00000588059 C2orf40Q9H1Z8 148 aa12.16□□□□□ -0.46
VPS4B-202ENST00000588059 TTC12Q9H892 705 aaPredicted RBP12.16□□□□□ -0.46
VPS4B-202ENST00000588059 ZSWIM6Q9HCJ5 1215 aa12.16□□□□□ -0.46
VPS4B-202ENST00000588059 PCDHA12Q9UN75 941 aa12.16□□□□□ -0.46
VPS4B-202ENST00000588059 CITO14578 2027 aa12.16□□□□□ -0.46
VPS4B-202ENST00000588059 BAHCC1Q9P281 2608 aa12.16□□□□□ -0.46
VPS4B-202ENST00000588059 STK36Q9NRP7 1315 aa12.15□□□□□ -0.46
VPS4B-202ENST00000588059 ACKR2O00590 384 aa12.15□□□□□ -0.46
VPS4B-202ENST00000588059 FOXD2O60548 495 aaPredicted RBP12.15□□□□□ -0.46
VPS4B-202ENST00000588059 DTNBO60941 627 aa12.15□□□□□ -0.46
VPS4B-202ENST00000588059 XRCC6P12956 609 aaKnown RBP eCLIP12.15□□□□□ -0.46
VPS4B-202ENST00000588059 LIG1P18858 919 aa12.15□□□□□ -0.46
VPS4B-202ENST00000588059 SHC2P98077 582 aa12.15□□□□□ -0.46
VPS4B-202ENST00000588059 SOX4Q06945 474 aaPredicted RBP12.15□□□□□ -0.46
VPS4B-202ENST00000588059 NR5A1Q13285 461 aa12.15□□□□□ -0.46
VPS4B-202ENST00000588059 CALCRLQ16602 461 aa12.15□□□□□ -0.46
VPS4B-202ENST00000588059 DCAF4L1Q3SXM0 396 aa12.15□□□□□ -0.46
VPS4B-202ENST00000588059 N4BP2L1Q5TBK1 243 aaPredicted RBP12.15□□□□□ -0.46
VPS4B-202ENST00000588059 HEATR6Q6AI08 1181 aaKnown RBP12.15□□□□□ -0.46
VPS4B-202ENST00000588059 Q6ZS52 159 aa12.15□□□□□ -0.46
VPS4B-202ENST00000588059 LONP2Q86WA8 852 aa12.15□□□□□ -0.46
VPS4B-202ENST00000588059 HS6ST3Q8IZP7 471 aa12.15□□□□□ -0.46
VPS4B-202ENST00000588059 ZSCAN18Q8TBC5 510 aaPredicted RBP12.15□□□□□ -0.46
VPS4B-202ENST00000588059 TNFRSF25Q93038 417 aa12.15□□□□□ -0.46
VPS4B-202ENST00000588059 TRPV4Q9HBA0 871 aa12.15□□□□□ -0.46
VPS4B-202ENST00000588059 CYP4F11Q9HBI6 524 aa12.15□□□□□ -0.46
VPS4B-202ENST00000588059 RBM12Q9NTZ6 932 aaKnown RBP12.15□□□□□ -0.46
VPS4B-202ENST00000588059 C2orf42Q9NWW7 574 aa12.15□□□□□ -0.46
VPS4B-202ENST00000588059 NUP210Q8TEM1 1887 aaPredicted RBP12.14□□□□□ -0.47
VPS4B-202ENST00000588059 KIF26AQ9ULI4 1882 aaPredicted RBP12.14□□□□□ -0.47
VPS4B-202ENST00000588059 SMIM28A0A1B0GU29 152 aa12.14□□□□□ -0.47
VPS4B-202ENST00000588059 WNT7AO00755 349 aa12.14□□□□□ -0.47
VPS4B-202ENST00000588059 TM4SF5O14894 197 aa12.14□□□□□ -0.47
VPS4B-202ENST00000588059 ZNF263O14978 683 aa12.14□□□□□ -0.47
VPS4B-202ENST00000588059 CDKL5O76039 1030 aa12.14□□□□□ -0.47
VPS4B-202ENST00000588059 SPATA31C1P0DKV0 1188 aa12.14□□□□□ -0.47
VPS4B-202ENST00000588059 GJA1P17302 382 aa12.14□□□□□ -0.47
VPS4B-202ENST00000588059 XBP1P17861 261 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms