RNA–Protein interactions for RNA: ENST00000585466.1

CLIP3-202, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 2

Gene CLIP3, Length 368 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-202ENST00000585466 FOXD4L6Q3SYB3 417 aaPredicted RBP16.54■□□□□ 0.24
CLIP3-202ENST00000585466 FOXD4L3Q6VB84 417 aaPredicted RBP16.54■□□□□ 0.24
CLIP3-202ENST00000585466 C15orf39Q6ZRI6 1047 aa16.54■□□□□ 0.24
CLIP3-202ENST00000585466 PALB2Q86YC2 1186 aa16.54■□□□□ 0.24
CLIP3-202ENST00000585466 GLYCTKQ8IVS8 523 aa16.54■□□□□ 0.24
CLIP3-202ENST00000585466 HDAC7Q8WUI4 952 aa16.54■□□□□ 0.24
CLIP3-202ENST00000585466 HVCN1Q96D96 273 aa16.54■□□□□ 0.24
CLIP3-202ENST00000585466 RIPOR3Q96MK2 946 aa16.54■□□□□ 0.24
CLIP3-202ENST00000585466 PLEKHA5Q9HAU0 1116 aa16.54■□□□□ 0.24
CLIP3-202ENST00000585466 OLFML3Q9NRN5 406 aa16.54■□□□□ 0.24
CLIP3-202ENST00000585466 MTRRQ9UBK8 725 aa16.54■□□□□ 0.24
CLIP3-202ENST00000585466 CPSF3Q9UKF6 684 aaKnown RBP16.54■□□□□ 0.24
CLIP3-202ENST00000585466 PCDHA7Q9UN72 937 aa16.54■□□□□ 0.24
CLIP3-202ENST00000585466 TSC2P49815 1807 aa16.54■□□□□ 0.24
CLIP3-202ENST00000585466 SCN1AP35498 2009 aa16.53■□□□□ 0.24
CLIP3-202ENST00000585466 LACTBL1A8MY62 500 aa16.53■□□□□ 0.24
CLIP3-202ENST00000585466 TBC1D4O60343 1298 aa16.53■□□□□ 0.24
CLIP3-202ENST00000585466 HSP90AA1P07900 732 aaKnown RBP16.53■□□□□ 0.24
CLIP3-202ENST00000585466 MYBP10242 640 aa16.53■□□□□ 0.24
CLIP3-202ENST00000585466 GAP43P17677 238 aa16.53■□□□□ 0.24
CLIP3-202ENST00000585466 LRPAP1P30533 357 aa16.53■□□□□ 0.24
CLIP3-202ENST00000585466 RPL9P32969 192 aaKnown RBP16.53■□□□□ 0.24
CLIP3-202ENST00000585466 CREMQ03060 361 aa16.53■□□□□ 0.24
CLIP3-202ENST00000585466 TMEM31Q5JXX7 168 aa16.53■□□□□ 0.24
CLIP3-202ENST00000585466 ATAT1Q5SQI0 421 aa16.53■□□□□ 0.24
CLIP3-202ENST00000585466 CRELD2Q6UXH1 353 aaPredicted RBP16.53■□□□□ 0.24
CLIP3-202ENST00000585466 CEP57Q86XR8 500 aa16.53■□□□□ 0.24
CLIP3-202ENST00000585466 STAMQ92783 540 aa16.53■□□□□ 0.24
CLIP3-202ENST00000585466 N4BP1O75113 896 aaKnown RBP16.52■□□□□ 0.24
CLIP3-202ENST00000585466 ABCD1P33897 745 aa16.52■□□□□ 0.24
CLIP3-202ENST00000585466 AARSP49588 968 aaKnown RBP eCLIP16.52■□□□□ 0.24
CLIP3-202ENST00000585466 GUCY2FP51841 1108 aa16.52■□□□□ 0.24
CLIP3-202ENST00000585466 RAB33AQ14088 237 aa16.52■□□□□ 0.24
CLIP3-202ENST00000585466 MRPL58Q14197 206 aaKnown RBP16.52■□□□□ 0.24
CLIP3-202ENST00000585466 RESP18Q5W5W9 173 aa16.52■□□□□ 0.24
CLIP3-202ENST00000585466 ATL3Q6DD88 541 aa16.52■□□□□ 0.24
CLIP3-202ENST00000585466 CNNM4Q6P4Q7 775 aa16.52■□□□□ 0.24
CLIP3-202ENST00000585466 KREMEN2Q8NCW0 462 aa16.52■□□□□ 0.24
CLIP3-202ENST00000585466 GLIS3Q8NEA6 775 aa16.52■□□□□ 0.24
CLIP3-202ENST00000585466 ZSWIM2Q8NEG5 633 aa16.52■□□□□ 0.24
CLIP3-202ENST00000585466 KCNG4Q8TDN1 519 aa16.52■□□□□ 0.24
CLIP3-202ENST00000585466 SUSD3Q96L08 255 aa16.52■□□□□ 0.24
CLIP3-202ENST00000585466 MSTO1Q9BUK6 570 aa16.52■□□□□ 0.24
CLIP3-202ENST00000585466 TNMDQ9H2S6 317 aa16.52■□□□□ 0.24
CLIP3-202ENST00000585466 PLEKHA4Q9H4M7 779 aa16.52■□□□□ 0.24
CLIP3-202ENST00000585466 TBC1D7Q9P0N9 293 aa16.52■□□□□ 0.24
CLIP3-202ENST00000585466 RCOR1Q9UKL0 485 aa16.52■□□□□ 0.24
CLIP3-202ENST00000585466 BACE2Q9Y5Z0 518 aa16.52■□□□□ 0.24
CLIP3-202ENST00000585466 CCDC195A0A1B0GUA6 201 aa16.51■□□□□ 0.23
CLIP3-202ENST00000585466 PPEF2O14830 753 aa16.51■□□□□ 0.23
CLIP3-202ENST00000585466 ZMYND10O75800 440 aa16.51■□□□□ 0.23
CLIP3-202ENST00000585466 CYP3A5P20815 502 aa16.51■□□□□ 0.23
CLIP3-202ENST00000585466 MATR3P43243 847 aaKnown RBP eCLIP16.51■□□□□ 0.23
CLIP3-202ENST00000585466 WNT7BP56706 349 aa16.51■□□□□ 0.23
CLIP3-202ENST00000585466 KYAT1Q16773 422 aa16.51■□□□□ 0.23
CLIP3-202ENST00000585466 L1TD1Q5T7N2 865 aaKnown RBP16.51■□□□□ 0.23
CLIP3-202ENST00000585466 EDAQ92838 391 aa16.51■□□□□ 0.23
CLIP3-202ENST00000585466 TRIM9Q9C026 710 aa16.51■□□□□ 0.23
CLIP3-202ENST00000585466 CUEDC2Q9H467 287 aa16.51■□□□□ 0.23
CLIP3-202ENST00000585466 MRPL44Q9H9J2 332 aaKnown RBP16.51■□□□□ 0.23
CLIP3-202ENST00000585466 USTQ9Y2C2 406 aa16.51■□□□□ 0.23
CLIP3-202ENST00000585466 NR2E1Q9Y466 385 aa16.51■□□□□ 0.23
CLIP3-202ENST00000585466 ZDBF2Q9HCK1 2354 aa16.51■□□□□ 0.23
CLIP3-202ENST00000585466 PRR33A8MZF0 331 aa16.5■□□□□ 0.23
CLIP3-202ENST00000585466 SYN3O14994 580 aa16.5■□□□□ 0.23
CLIP3-202ENST00000585466 NFICP08651 508 aa16.5■□□□□ 0.23
CLIP3-202ENST00000585466 OR1D2P34982 312 aa16.5■□□□□ 0.23
CLIP3-202ENST00000585466 HOXD13P35453 343 aa16.5■□□□□ 0.23
CLIP3-202ENST00000585466 ACOT2P49753 483 aa16.5■□□□□ 0.23
CLIP3-202ENST00000585466 ZXDAP98168 799 aa16.5■□□□□ 0.23
CLIP3-202ENST00000585466 PPP2R3AQ06190 1150 aa16.5■□□□□ 0.23
CLIP3-202ENST00000585466 EHHADHQ08426 723 aa16.5■□□□□ 0.23
CLIP3-202ENST00000585466 PTPN21Q16825 1174 aa16.5■□□□□ 0.23
CLIP3-202ENST00000585466 VARS2Q5ST30 1063 aaKnown RBP16.5■□□□□ 0.23
CLIP3-202ENST00000585466 JADE1Q6IE81 842 aa16.5■□□□□ 0.23
CLIP3-202ENST00000585466 SLC8B1Q6J4K2 584 aa16.5■□□□□ 0.23
CLIP3-202ENST00000585466 PDXDC1Q6P996 788 aa16.5■□□□□ 0.23
CLIP3-202ENST00000585466 CYP26C1Q6V0L0 522 aa16.5■□□□□ 0.23
CLIP3-202ENST00000585466 ZDHHC14Q8IZN3 488 aa16.5■□□□□ 0.23
CLIP3-202ENST00000585466 HPS3Q969F9 1004 aa16.5■□□□□ 0.23
CLIP3-202ENST00000585466 DHX58Q96C10 678 aa16.5■□□□□ 0.23
CLIP3-202ENST00000585466 KIF12Q96FN5 646 aa16.5■□□□□ 0.23
CLIP3-202ENST00000585466 RPF1Q9H9Y2 349 aaKnown RBP16.5■□□□□ 0.23
CLIP3-202ENST00000585466 WDR6Q9NNW5 1121 aaKnown RBP16.5■□□□□ 0.23
CLIP3-202ENST00000585466 PANK4Q9NVE7 773 aa16.5■□□□□ 0.23
CLIP3-202ENST00000585466 ZDHHC7Q9NXF8 308 aa16.5■□□□□ 0.23
CLIP3-202ENST00000585466 UBQLN1Q9UMX0 589 aaKnown RBP16.5■□□□□ 0.23
CLIP3-202ENST00000585466 MUC6Q6W4X9 2439 aa16.5■□□□□ 0.23
CLIP3-202ENST00000585466 M0QZQ0 153 aa16.49■□□□□ 0.23
CLIP3-202ENST00000585466 TRAPPC3O43617 180 aa16.49■□□□□ 0.23
CLIP3-202ENST00000585466 IDEP14735 1019 aa16.49■□□□□ 0.23
CLIP3-202ENST00000585466 SPATA1Q5VX52 437 aa16.49■□□□□ 0.23
CLIP3-202ENST00000585466 ADALQ6DHV7 355 aa16.49■□□□□ 0.23
CLIP3-202ENST00000585466 SLFN12LQ6IEE8 588 aa16.49■□□□□ 0.23
CLIP3-202ENST00000585466 ANKS3Q6ZW76 656 aa16.49■□□□□ 0.23
CLIP3-202ENST00000585466 SMG7Q92540 1137 aaKnown RBP16.49■□□□□ 0.23
CLIP3-202ENST00000585466 TSPAN18Q96SJ8 248 aa16.49■□□□□ 0.23
CLIP3-202ENST00000585466 C7orf25Q9BPX7 421 aa16.49■□□□□ 0.23
CLIP3-202ENST00000585466 PRKD2Q9BZL6 878 aa16.49■□□□□ 0.23
CLIP3-202ENST00000585466 TSHZ2Q9NRE2 1034 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms