RNA–Protein interactions for RNA: ENST00000584897.5

SMCHD1-211, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,143 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-211ENST00000584897 PLEKHO2Q8TD55 490 aa2.27□□□□□ -2.05
SMCHD1-211ENST00000584897 COPS5Q92905 334 aa2.27□□□□□ -2.05
SMCHD1-211ENST00000584897 ARPC5LQ9BPX5 153 aa2.27□□□□□ -2.05
SMCHD1-211ENST00000584897 TRIM8Q9BZR9 551 aa2.27□□□□□ -2.05
SMCHD1-211ENST00000584897 CHST12Q9NRB3 414 aa2.27□□□□□ -2.05
SMCHD1-211ENST00000584897 SPATA6Q9NWH7 488 aaPredicted RBP2.27□□□□□ -2.05
SMCHD1-211ENST00000584897 GALNT8Q9NY28 637 aa2.27□□□□□ -2.05
SMCHD1-211ENST00000584897 STK26Q9P289 416 aa2.27□□□□□ -2.05
SMCHD1-211ENST00000584897 NPFFR2Q9Y5X5 522 aa2.27□□□□□ -2.05
SMCHD1-211ENST00000584897 SCN7AQ01118 1682 aa2.27□□□□□ -2.05
SMCHD1-211ENST00000584897 ST20-MTHFSA0A0A6YYL1 179 aa2.27□□□□□ -2.05
SMCHD1-211ENST00000584897 NOTOA8MTQ0 251 aa2.27□□□□□ -2.05
SMCHD1-211ENST00000584897 CTNND1O60716 968 aaKnown RBP2.27□□□□□ -2.05
SMCHD1-211ENST00000584897 PQBP1O60828 265 aaKnown RBP2.27□□□□□ -2.05
SMCHD1-211ENST00000584897 APOL3O95236 402 aa2.27□□□□□ -2.05
SMCHD1-211ENST00000584897 COL6A1P12109 1028 aa2.27□□□□□ -2.05
SMCHD1-211ENST00000584897 RECQLP46063 649 aaPredicted RBP2.27□□□□□ -2.05
SMCHD1-211ENST00000584897 USP14P54578 494 aa2.27□□□□□ -2.05
SMCHD1-211ENST00000584897 SOX10P56693 466 aa2.27□□□□□ -2.05
SMCHD1-211ENST00000584897 BCAR1P56945 870 aa2.27□□□□□ -2.05
SMCHD1-211ENST00000584897 PTH1RQ03431 593 aa2.27□□□□□ -2.05
SMCHD1-211ENST00000584897 TUSC3Q13454 348 aa2.27□□□□□ -2.05
SMCHD1-211ENST00000584897 DHX8Q14562 1220 aaKnown RBP2.27□□□□□ -2.05
SMCHD1-211ENST00000584897 SYDE2Q5VT97 1194 aa2.27□□□□□ -2.05
SMCHD1-211ENST00000584897 FAM43AQ8N2R8 423 aa2.27□□□□□ -2.05
SMCHD1-211ENST00000584897 HIPK4Q8NE63 616 aa2.27□□□□□ -2.05
SMCHD1-211ENST00000584897 NPLOC4Q8TAT6 608 aa2.27□□□□□ -2.05
SMCHD1-211ENST00000584897 LGR4Q9BXB1 951 aa2.27□□□□□ -2.05
SMCHD1-211ENST00000584897 OR10A2Q9H208 303 aa2.27□□□□□ -2.05
SMCHD1-211ENST00000584897 EPC1Q9H2F5 836 aa2.27□□□□□ -2.05
SMCHD1-211ENST00000584897 SLC52A2Q9HAB3 445 aa2.27□□□□□ -2.05
SMCHD1-211ENST00000584897 CYP4F11Q9HBI6 524 aa2.27□□□□□ -2.05
SMCHD1-211ENST00000584897 CNNM1Q9NRU3 951 aa2.27□□□□□ -2.05
SMCHD1-211ENST00000584897 DMTF1Q9Y222 760 aa2.27□□□□□ -2.05
SMCHD1-211ENST00000584897 ASB1Q9Y576 335 aa2.27□□□□□ -2.05
SMCHD1-211ENST00000584897 COL11A2P13942 1736 aaPredicted RBP2.26□□□□□ -2.05
SMCHD1-211ENST00000584897 MAPK8IP3Q9UPT6 1336 aa2.26□□□□□ -2.05
SMCHD1-211ENST00000584897 CASP8AP2Q9UKL3 1982 aa2.26□□□□□ -2.05
SMCHD1-211ENST00000584897 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP2.26□□□□□ -2.05
SMCHD1-211ENST00000584897 SLC12A8A0AV02 714 aa2.26□□□□□ -2.05
SMCHD1-211ENST00000584897 ANP32CO43423 234 aa2.26□□□□□ -2.05
SMCHD1-211ENST00000584897 RAMP2O60895 175 aa2.26□□□□□ -2.05
SMCHD1-211ENST00000584897 FSBPO95073 299 aa2.26□□□□□ -2.05
SMCHD1-211ENST00000584897 HSPA5P11021 654 aaKnown RBP2.26□□□□□ -2.05
SMCHD1-211ENST00000584897 PAX3P23760 479 aa2.26□□□□□ -2.05
SMCHD1-211ENST00000584897 APEX1P27695 318 aaKnown RBP2.26□□□□□ -2.05
SMCHD1-211ENST00000584897 CYP2C19P33261 490 aa2.26□□□□□ -2.05
SMCHD1-211ENST00000584897 CHAF1AQ13111 956 aaPredicted RBP2.26□□□□□ -2.05
SMCHD1-211ENST00000584897 DHCR24Q15392 516 aa2.26□□□□□ -2.05
SMCHD1-211ENST00000584897 NTRK3Q16288 839 aa2.26□□□□□ -2.05
SMCHD1-211ENST00000584897 SMN1Q16637 294 aaKnown RBP2.26□□□□□ -2.05
SMCHD1-211ENST00000584897 IL31Q6EBC2 164 aa2.26□□□□□ -2.05
SMCHD1-211ENST00000584897 OTOP3Q7RTS5 596 aa2.26□□□□□ -2.05
SMCHD1-211ENST00000584897 OTOP2Q7RTS6 562 aa2.26□□□□□ -2.05
SMCHD1-211ENST00000584897 PDILTQ8N807 584 aa2.26□□□□□ -2.05
SMCHD1-211ENST00000584897 ARNT2Q9HBZ2 717 aa2.26□□□□□ -2.05
SMCHD1-211ENST00000584897 MAN1C1Q9NR34 630 aa2.26□□□□□ -2.05
SMCHD1-211ENST00000584897 APEX2Q9UBZ4 518 aa2.26□□□□□ -2.05
SMCHD1-211ENST00000584897 ZFR2Q9UPR6 939 aaKnown RBP2.26□□□□□ -2.05
SMCHD1-211ENST00000584897 PCDHA8Q9Y5H6 950 aa2.26□□□□□ -2.05
SMCHD1-211ENST00000584897 GPR39O43194 453 aa2.26□□□□□ -2.05
SMCHD1-211ENST00000584897 TBX1O43435 398 aa2.26□□□□□ -2.05
SMCHD1-211ENST00000584897 OFD1O75665 1012 aa2.26□□□□□ -2.05
SMCHD1-211ENST00000584897 CYP17A1P05093 508 aa2.26□□□□□ -2.05
SMCHD1-211ENST00000584897 CR2P20023 1033 aa2.26□□□□□ -2.05
SMCHD1-211ENST00000584897 HOXC9P31274 260 aa2.26□□□□□ -2.05
SMCHD1-211ENST00000584897 MTMR1Q13613 665 aa2.26□□□□□ -2.05
SMCHD1-211ENST00000584897 RAPGEF1Q13905 1077 aa2.26□□□□□ -2.05
SMCHD1-211ENST00000584897 NFE2Q16621 373 aaPredicted RBP2.26□□□□□ -2.05
SMCHD1-211ENST00000584897 ANO4Q32M45 955 aa2.26□□□□□ -2.05
SMCHD1-211ENST00000584897 CXorf57Q6NSI4 855 aaKnown RBP2.26□□□□□ -2.05
SMCHD1-211ENST00000584897 ZCCHC8Q6NZY4 707 aaKnown RBP2.26□□□□□ -2.05
SMCHD1-211ENST00000584897 DNAJC10Q8IXB1 793 aa2.26□□□□□ -2.05
SMCHD1-211ENST00000584897 ANKRD31Q8N7Z5 1873 aa2.26□□□□□ -2.05
SMCHD1-211ENST00000584897 UHMK1Q8TAS1 419 aaKnown RBP2.26□□□□□ -2.05
SMCHD1-211ENST00000584897 PPIL4Q8WUA2 492 aaKnown RBP eCLIP2.26□□□□□ -2.05
SMCHD1-211ENST00000584897 FERMT2Q96AC1 680 aa2.26□□□□□ -2.05
SMCHD1-211ENST00000584897 SLC7A6OSQ96CW6 309 aaPredicted RBP2.26□□□□□ -2.05
SMCHD1-211ENST00000584897 HSPBAP1Q96EW2 488 aa2.26□□□□□ -2.05
SMCHD1-211ENST00000584897 C20orf173Q96LM9 149 aa2.26□□□□□ -2.05
SMCHD1-211ENST00000584897 ARFGAP3Q9NP61 516 aa2.26□□□□□ -2.05
SMCHD1-211ENST00000584897 KIF7Q2M1P5 1343 aa2.26□□□□□ -2.05
SMCHD1-211ENST00000584897 PRAMEF25A6NGN4 478 aa2.26□□□□□ -2.05
SMCHD1-211ENST00000584897 SGSM2O43147 1006 aa2.26□□□□□ -2.05
SMCHD1-211ENST00000584897 AP1G1O43747 822 aa2.26□□□□□ -2.05
SMCHD1-211ENST00000584897 CLASP2O75122 1294 aaKnown RBP2.26□□□□□ -2.05
SMCHD1-211ENST00000584897 GALK1P51570 392 aa2.26□□□□□ -2.05
SMCHD1-211ENST00000584897 NEK3P51956 506 aa2.26□□□□□ -2.05
SMCHD1-211ENST00000584897 GFRA1P56159 465 aa2.26□□□□□ -2.05
SMCHD1-211ENST00000584897 SESN3P58005 492 aa2.26□□□□□ -2.05
SMCHD1-211ENST00000584897 DPTQ07507 201 aa2.26□□□□□ -2.05
SMCHD1-211ENST00000584897 STK3Q13188 491 aa2.26□□□□□ -2.05
SMCHD1-211ENST00000584897 SPTY2D1Q68D10 685 aaPredicted RBP2.26□□□□□ -2.05
SMCHD1-211ENST00000584897 CCDC70Q6NSX1 233 aa2.26□□□□□ -2.05
SMCHD1-211ENST00000584897 LBX2Q6XYB7 198 aa2.26□□□□□ -2.05
SMCHD1-211ENST00000584897 STRA8Q7Z7C7 330 aa2.26□□□□□ -2.05
SMCHD1-211ENST00000584897 WDR63Q8IWG1 891 aa2.26□□□□□ -2.05
SMCHD1-211ENST00000584897 PPM1NQ8N819 430 aa2.26□□□□□ -2.05
SMCHD1-211ENST00000584897 DTX3Q8N9I9 347 aa2.26□□□□□ -2.05
SMCHD1-211ENST00000584897 MYRIPQ8NFW9 859 aa2.26□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms