RNA–Protein interactions for RNA: ENST00000580287.5

CDK5RAP3-217, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 1 (best)

Gene CDK5RAP3, Length 2,609 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-217ENST00000580287 COG1Q8WTW3 980 aa13.66□□□□□ -0.22
CDK5RAP3-217ENST00000580287 FNBP1Q96RU3 617 aa13.66□□□□□ -0.22
CDK5RAP3-217ENST00000580287 HMX1Q9NP08 348 aaPredicted RBP13.66□□□□□ -0.22
CDK5RAP3-217ENST00000580287 CNTNAP2Q9UHC6 1331 aa13.66□□□□□ -0.22
CDK5RAP3-217ENST00000580287 MEFVO15553 781 aaPredicted RBP13.66□□□□□ -0.22
CDK5RAP3-217ENST00000580287 CXCL8P10145 99 aa13.66□□□□□ -0.22
CDK5RAP3-217ENST00000580287 HSPA6P17066 643 aa13.66□□□□□ -0.22
CDK5RAP3-217ENST00000580287 HOXA11P31270 313 aaPredicted RBP13.66□□□□□ -0.22
CDK5RAP3-217ENST00000580287 PAPD7Q5XG87 772 aaKnown RBP13.66□□□□□ -0.22
CDK5RAP3-217ENST00000580287 IPO4Q8TEX9 1081 aaKnown RBP13.66□□□□□ -0.22
CDK5RAP3-217ENST00000580287 NFKBIZQ9BYH8 718 aa13.66□□□□□ -0.22
CDK5RAP3-217ENST00000580287 VPS18Q9P253 973 aa13.66□□□□□ -0.22
CDK5RAP3-217ENST00000580287 L1RE1Q9UN81 338 aa13.66□□□□□ -0.22
CDK5RAP3-217ENST00000580287 MAP2K7O14733 419 aa13.65□□□□□ -0.22
CDK5RAP3-217ENST00000580287 MAPK13O15264 365 aa13.65□□□□□ -0.22
CDK5RAP3-217ENST00000580287 OGTO15294 1046 aa13.65□□□□□ -0.22
CDK5RAP3-217ENST00000580287 HOXC8P31273 242 aa13.65□□□□□ -0.22
CDK5RAP3-217ENST00000580287 ABCD1P33897 745 aa13.65□□□□□ -0.22
CDK5RAP3-217ENST00000580287 ACLYP53396 1101 aa13.65□□□□□ -0.22
CDK5RAP3-217ENST00000580287 BRD3Q15059 726 aa13.65□□□□□ -0.22
CDK5RAP3-217ENST00000580287 PTPROQ16827 1216 aa13.65□□□□□ -0.22
CDK5RAP3-217ENST00000580287 SPOPLQ6IQ16 392 aa13.65□□□□□ -0.22
CDK5RAP3-217ENST00000580287 CATSPER4Q7RTX7 472 aa13.65□□□□□ -0.22
CDK5RAP3-217ENST00000580287 HDAC7Q8WUI4 952 aa13.65□□□□□ -0.22
CDK5RAP3-217ENST00000580287 RIN2Q8WYP3 895 aaPredicted RBP13.65□□□□□ -0.22
CDK5RAP3-217ENST00000580287 TATDN2Q93075 761 aa13.65□□□□□ -0.22
CDK5RAP3-217ENST00000580287 EIF2AQ9BY44 585 aaKnown RBP13.65□□□□□ -0.22
CDK5RAP3-217ENST00000580287 UNC93B1Q9H1C4 597 aa13.65□□□□□ -0.22
CDK5RAP3-217ENST00000580287 UBE2TQ9NPD8 197 aaPredicted RBP13.65□□□□□ -0.22
CDK5RAP3-217ENST00000580287 LUC7LQ9NQ29 371 aaKnown RBP13.65□□□□□ -0.22
CDK5RAP3-217ENST00000580287 SAGE1Q9NXZ1 904 aa13.65□□□□□ -0.22
CDK5RAP3-217ENST00000580287 DNAJC12Q9UKB3 198 aa13.65□□□□□ -0.22
CDK5RAP3-217ENST00000580287 CPSF3Q9UKF6 684 aaKnown RBP13.65□□□□□ -0.22
CDK5RAP3-217ENST00000580287 RAB21Q9UL25 225 aa13.65□□□□□ -0.22
CDK5RAP3-217ENST00000580287 TNFSF13BQ9Y275 285 aa13.65□□□□□ -0.22
CDK5RAP3-217ENST00000580287 A0A087X0T9 212 aa13.65□□□□□ -0.22
CDK5RAP3-217ENST00000580287 LCA5LO95447 670 aa13.65□□□□□ -0.22
CDK5RAP3-217ENST00000580287 FAM228BP0C875 321 aa13.65□□□□□ -0.22
CDK5RAP3-217ENST00000580287 DARSP14868 501 aaKnown RBP13.65□□□□□ -0.22
CDK5RAP3-217ENST00000580287 EIF4BP23588 611 aaKnown RBP13.65□□□□□ -0.22
CDK5RAP3-217ENST00000580287 POU5F1BQ06416 359 aa13.65□□□□□ -0.22
CDK5RAP3-217ENST00000580287 GPS2Q13227 327 aa13.65□□□□□ -0.22
CDK5RAP3-217ENST00000580287 PSMD6Q15008 389 aa13.65□□□□□ -0.22
CDK5RAP3-217ENST00000580287 SNX17Q15036 470 aa13.65□□□□□ -0.22
CDK5RAP3-217ENST00000580287 ASTE1Q2TB18 679 aaPredicted RBP13.65□□□□□ -0.22
CDK5RAP3-217ENST00000580287 EPC2Q52LR7 807 aa13.65□□□□□ -0.22
CDK5RAP3-217ENST00000580287 TDRD10Q5VZ19 366 aaKnown RBP13.65□□□□□ -0.22
CDK5RAP3-217ENST00000580287 KRT39Q6A163 491 aa13.65□□□□□ -0.22
CDK5RAP3-217ENST00000580287 SYN2Q92777 582 aaPredicted RBP13.65□□□□□ -0.22
CDK5RAP3-217ENST00000580287 GCOM2Q9BZD3 368 aaPredicted RBP13.65□□□□□ -0.22
CDK5RAP3-217ENST00000580287 ACP6Q9NPH0 428 aa13.65□□□□□ -0.22
CDK5RAP3-217ENST00000580287 PLCB1Q9NQ66 1216 aa13.65□□□□□ -0.22
CDK5RAP3-217ENST00000580287 JRKLQ9Y4A0 524 aa13.65□□□□□ -0.22
CDK5RAP3-217ENST00000580287 ANO9A1A5B4 782 aa13.64□□□□□ -0.23
CDK5RAP3-217ENST00000580287 CST3P01034 146 aaPredicted RBP13.64□□□□□ -0.23
CDK5RAP3-217ENST00000580287 BIRC3Q13489 604 aa13.64□□□□□ -0.23
CDK5RAP3-217ENST00000580287 ITGA7Q13683 1181 aa13.64□□□□□ -0.23
CDK5RAP3-217ENST00000580287 CASP8Q14790 479 aa13.64□□□□□ -0.23
CDK5RAP3-217ENST00000580287 ZSCAN26Q16670 478 aa13.64□□□□□ -0.23
CDK5RAP3-217ENST00000580287 RNF180Q86T96 592 aa13.64□□□□□ -0.23
CDK5RAP3-217ENST00000580287 SLAIN1Q8ND83 568 aa13.64□□□□□ -0.23
CDK5RAP3-217ENST00000580287 TMC2Q8TDI7 906 aa13.64□□□□□ -0.23
CDK5RAP3-217ENST00000580287 NOX5Q96PH1 765 aa13.64□□□□□ -0.23
CDK5RAP3-217ENST00000580287 TMEM8AQ9HCN3 771 aa13.64□□□□□ -0.23
CDK5RAP3-217ENST00000580287 WBP1LQ9NX94 342 aa13.64□□□□□ -0.23
CDK5RAP3-217ENST00000580287 GTPBP10A4D1E9 387 aaKnown RBP13.64□□□□□ -0.23
CDK5RAP3-217ENST00000580287 KPNA6O60684 536 aa13.64□□□□□ -0.23
CDK5RAP3-217ENST00000580287 LDHAP00338 332 aaKnown RBP13.64□□□□□ -0.23
CDK5RAP3-217ENST00000580287 GNRH1P01148 92 aa13.64□□□□□ -0.23
CDK5RAP3-217ENST00000580287 CALCAP01258 141 aa13.64□□□□□ -0.23
CDK5RAP3-217ENST00000580287 STAG3L1P0CL83 205 aa13.64□□□□□ -0.23
CDK5RAP3-217ENST00000580287 GNAT1P11488 350 aa13.64□□□□□ -0.23
CDK5RAP3-217ENST00000580287 PTK2Q05397 1052 aa13.64□□□□□ -0.23
CDK5RAP3-217ENST00000580287 CKAP4Q07065 602 aaKnown RBP13.64□□□□□ -0.23
CDK5RAP3-217ENST00000580287 ZNF410Q86VK4 478 aa13.64□□□□□ -0.23
CDK5RAP3-217ENST00000580287 MTMR12Q9C0I1 747 aa13.64□□□□□ -0.23
CDK5RAP3-217ENST00000580287 KIAA1586Q9HCI6 787 aa13.64□□□□□ -0.23
CDK5RAP3-217ENST00000580287 APEX2Q9UBZ4 518 aa13.64□□□□□ -0.23
CDK5RAP3-217ENST00000580287 ADAM21Q9UKJ8 722 aa13.64□□□□□ -0.23
CDK5RAP3-217ENST00000580287 FAN1Q9Y2M0 1017 aa13.64□□□□□ -0.23
CDK5RAP3-217ENST00000580287 A0A1B0GUA9 196 aa13.63□□□□□ -0.23
CDK5RAP3-217ENST00000580287 GFPT2O94808 682 aa13.63□□□□□ -0.23
CDK5RAP3-217ENST00000580287 VNN1O95497 513 aa13.63□□□□□ -0.23
CDK5RAP3-217ENST00000580287 C4BPAP04003 597 aaKnown RBP13.63□□□□□ -0.23
CDK5RAP3-217ENST00000580287 IBSPP21815 317 aaPredicted RBP13.63□□□□□ -0.23
CDK5RAP3-217ENST00000580287 TFAMQ00059 246 aaKnown RBP13.63□□□□□ -0.23
CDK5RAP3-217ENST00000580287 SLC7A5Q01650 507 aa13.63□□□□□ -0.23
CDK5RAP3-217ENST00000580287 DRAP1Q14919 205 aaPredicted RBP13.63□□□□□ -0.23
CDK5RAP3-217ENST00000580287 SLC18A3Q16572 532 aa13.63□□□□□ -0.23
CDK5RAP3-217ENST00000580287 PTGISQ16647 500 aa13.63□□□□□ -0.23
CDK5RAP3-217ENST00000580287 FAM187BQ17R55 369 aa13.63□□□□□ -0.23
CDK5RAP3-217ENST00000580287 PPM1KQ8N3J5 372 aa13.63□□□□□ -0.23
CDK5RAP3-217ENST00000580287 PACSIN1Q9BY11 444 aa13.63□□□□□ -0.23
CDK5RAP3-217ENST00000580287 GPR88Q9GZN0 384 aa13.63□□□□□ -0.23
CDK5RAP3-217ENST00000580287 TRPV6Q9H1D0 765 aa13.63□□□□□ -0.23
CDK5RAP3-217ENST00000580287 RAB20Q9NX57 234 aa13.63□□□□□ -0.23
CDK5RAP3-217ENST00000580287 AIPL1Q9NZN9 384 aa13.63□□□□□ -0.23
CDK5RAP3-217ENST00000580287 FOXN3O00409 490 aaPredicted RBP13.63□□□□□ -0.23
CDK5RAP3-217ENST00000580287 ERLIN1O75477 346 aa13.63□□□□□ -0.23
CDK5RAP3-217ENST00000580287 NPTXRO95502 500 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms