RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 PLA2G4BP0C869 781 aa14.98□□□□□ -0.01
CCDC40-216ENST00000576241 LAMP2P13473 410 aa14.98□□□□□ -0.01
CCDC40-216ENST00000576241 RFX1P22670 979 aa14.98□□□□□ -0.01
CCDC40-216ENST00000576241 PROZP22891 400 aa14.98□□□□□ -0.01
CCDC40-216ENST00000576241 TKTP29401 623 aaKnown RBP14.98□□□□□ -0.01
CCDC40-216ENST00000576241 OR1D2P34982 312 aa14.98□□□□□ -0.01
CCDC40-216ENST00000576241 RAB33AQ14088 237 aa14.98□□□□□ -0.01
CCDC40-216ENST00000576241 NOLC1Q14978 699 aaKnown RBP eCLIP14.98□□□□□ -0.01
CCDC40-216ENST00000576241 XKR4Q5GH76 650 aa14.98□□□□□ -0.01
CCDC40-216ENST00000576241 AXDND1Q5T1B0 1012 aaPredicted RBP14.98□□□□□ -0.01
CCDC40-216ENST00000576241 LARP1BQ659C4 914 aaKnown RBP14.98□□□□□ -0.01
CCDC40-216ENST00000576241 ALKAL1Q6UXT8 129 aa14.98□□□□□ -0.01
CCDC40-216ENST00000576241 GRASPQ7Z6J2 395 aaPredicted RBP14.98□□□□□ -0.01
CCDC40-216ENST00000576241 SLC44A3Q8N4M1 653 aa14.98□□□□□ -0.01
CCDC40-216ENST00000576241 SLC7A14Q8TBB6 771 aa14.98□□□□□ -0.01
CCDC40-216ENST00000576241 AK8Q96MA6 479 aa14.98□□□□□ -0.01
CCDC40-216ENST00000576241 PNMA5Q96PV4 448 aa14.98□□□□□ -0.01
CCDC40-216ENST00000576241 ZFP37Q9Y6Q3 630 aaPredicted RBP14.98□□□□□ -0.01
CCDC40-216ENST00000576241 FAM208BQ5VWN6 2430 aa14.98□□□□□ -0.01
CCDC40-216ENST00000576241 C2orf16Q68DN1 1984 aa14.98□□□□□ -0.01
CCDC40-216ENST00000576241 H0YCG3 227 aa14.97□□□□□ -0.01
CCDC40-216ENST00000576241 I3L4J1 428 aa14.97□□□□□ -0.01
CCDC40-216ENST00000576241 STK25O00506 426 aa14.97□□□□□ -0.01
CCDC40-216ENST00000576241 PODXLO00592 558 aa14.97□□□□□ -0.01
CCDC40-216ENST00000576241 CCL16O15467 120 aa14.97□□□□□ -0.01
CCDC40-216ENST00000576241 ADAM12O43184 909 aa14.97□□□□□ -0.01
CCDC40-216ENST00000576241 SLC26A4O43511 780 aa14.97□□□□□ -0.01
CCDC40-216ENST00000576241 NARSO43776 548 aaKnown RBP14.97□□□□□ -0.01
CCDC40-216ENST00000576241 BMP15O95972 392 aa14.97□□□□□ -0.01
CCDC40-216ENST00000576241 CFHP08603 1231 aa14.97□□□□□ -0.01
CCDC40-216ENST00000576241 SRFP11831 508 aa14.97□□□□□ -0.01
CCDC40-216ENST00000576241 KCNE1P15382 129 aa14.97□□□□□ -0.01
CCDC40-216ENST00000576241 MATR3P43243 847 aaKnown RBP eCLIP14.97□□□□□ -0.01
CCDC40-216ENST00000576241 SLC12A3P55017 1021 aa14.97□□□□□ -0.01
CCDC40-216ENST00000576241 UVSSAQ2YD98 709 aa14.97□□□□□ -0.01
CCDC40-216ENST00000576241 TMEM119Q4V9L6 283 aa14.97□□□□□ -0.01
CCDC40-216ENST00000576241 ZPBP2Q6X784 338 aa14.97□□□□□ -0.01
CCDC40-216ENST00000576241 TMEM161BQ8NDZ6 487 aa14.97□□□□□ -0.01
CCDC40-216ENST00000576241 BICD1Q96G01 975 aa14.97□□□□□ -0.01
CCDC40-216ENST00000576241 CALML4Q96GE6 196 aa14.97□□□□□ -0.01
CCDC40-216ENST00000576241 CHAMP1Q96JM3 812 aa14.97□□□□□ -0.01
CCDC40-216ENST00000576241 CNTN3Q9P232 1028 aa14.97□□□□□ -0.01
CCDC40-216ENST00000576241 LARSQ9P2J5 1176 aaKnown RBP14.97□□□□□ -0.01
CCDC40-216ENST00000576241 WNT16Q9UBV4 365 aa14.97□□□□□ -0.01
CCDC40-216ENST00000576241 NUB1Q9Y5A7 615 aa14.97□□□□□ -0.01
CCDC40-216ENST00000576241 BACE2Q9Y5Z0 518 aa14.97□□□□□ -0.01
CCDC40-216ENST00000576241 CDY1Q9Y6F8 540 aa14.97□□□□□ -0.01
CCDC40-216ENST00000576241 ABLIM1O14639 778 aa14.96□□□□□ -0.01
CCDC40-216ENST00000576241 CLDN3O15551 220 aa14.96□□□□□ -0.01
CCDC40-216ENST00000576241 MAPTP10636 758 aaKnown RBP14.96□□□□□ -0.01
CCDC40-216ENST00000576241 RPL9P32969 192 aaKnown RBP14.96□□□□□ -0.01
CCDC40-216ENST00000576241 UBA7P41226 1012 aa14.96□□□□□ -0.01
CCDC40-216ENST00000576241 BRCC3P46736 316 aa14.96□□□□□ -0.01
CCDC40-216ENST00000576241 SOX4Q06945 474 aaPredicted RBP14.96□□□□□ -0.01
CCDC40-216ENST00000576241 ZC3H14Q6PJT7 736 aaKnown RBP14.96□□□□□ -0.01
CCDC40-216ENST00000576241 RTL10Q7L3V2 364 aa14.96□□□□□ -0.01
CCDC40-216ENST00000576241 BRAPQ7Z569 592 aa14.96□□□□□ -0.01
CCDC40-216ENST00000576241 C3orf58Q8NDZ4 430 aa14.96□□□□□ -0.01
CCDC40-216ENST00000576241 RASSF8Q8NHQ8 419 aa14.96□□□□□ -0.01
CCDC40-216ENST00000576241 ZMAT2Q96NC0 199 aaKnown RBP14.96□□□□□ -0.01
CCDC40-216ENST00000576241 TBC1D32Q96NH3 1257 aa14.96□□□□□ -0.01
CCDC40-216ENST00000576241 CDH7Q9ULB5 785 aa14.96□□□□□ -0.01
CCDC40-216ENST00000576241 ODF2LQ9ULJ1 636 aa14.96□□□□□ -0.01
CCDC40-216ENST00000576241 ANHXE9PGG2 379 aa14.95□□□□□ -0.02
CCDC40-216ENST00000576241 POU2F2P09086 479 aa14.95□□□□□ -0.02
CCDC40-216ENST00000576241 SDHBP21912 280 aa14.95□□□□□ -0.02
CCDC40-216ENST00000576241 IGFBP6P24592 240 aaPredicted RBP14.95□□□□□ -0.02
CCDC40-216ENST00000576241 NTHL1P78549 312 aa14.95□□□□□ -0.02
CCDC40-216ENST00000576241 CACNB1Q02641 598 aaPredicted RBP14.95□□□□□ -0.02
CCDC40-216ENST00000576241 HTR4Q13639 388 aa14.95□□□□□ -0.02
CCDC40-216ENST00000576241 CD300LGQ6UXG3 332 aa14.95□□□□□ -0.02
CCDC40-216ENST00000576241 GPBP1Q86WP2 473 aa14.95□□□□□ -0.02
CCDC40-216ENST00000576241 SUMF1Q8NBK3 374 aa14.95□□□□□ -0.02
CCDC40-216ENST00000576241 C18orf25Q96B23 403 aaPredicted RBP14.95□□□□□ -0.02
CCDC40-216ENST00000576241 ZBTB45Q96K62 511 aaPredicted RBP14.95□□□□□ -0.02
CCDC40-216ENST00000576241 NUMBLQ9Y6R0 609 aa14.95□□□□□ -0.02
CCDC40-216ENST00000576241 ANKRD11Q6UB99 2663 aaPredicted RBP14.94□□□□□ -0.02
CCDC40-216ENST00000576241 NPHP3-ACAD11A0A0J9YXS1 232 aa14.94□□□□□ -0.02
CCDC40-216ENST00000576241 DCDC2BA2VCK2 349 aa14.94□□□□□ -0.02
CCDC40-216ENST00000576241 H7C4K7 107 aa14.94□□□□□ -0.02
CCDC40-216ENST00000576241 PRRG1O14668 218 aa14.94□□□□□ -0.02
CCDC40-216ENST00000576241 SYN3O14994 580 aa14.94□□□□□ -0.02
CCDC40-216ENST00000576241 KRT18P05783 430 aaKnown RBP14.94□□□□□ -0.02
CCDC40-216ENST00000576241 ADRB1P08588 477 aa14.94□□□□□ -0.02
CCDC40-216ENST00000576241 SP9P0CG40 484 aa14.94□□□□□ -0.02
CCDC40-216ENST00000576241 SCP2P22307 547 aa14.94□□□□□ -0.02
CCDC40-216ENST00000576241 ELF1P32519 619 aa14.94□□□□□ -0.02
CCDC40-216ENST00000576241 LONP1P36776 959 aaKnown RBP14.94□□□□□ -0.02
CCDC40-216ENST00000576241 MCL1Q07820 350 aa14.94□□□□□ -0.02
CCDC40-216ENST00000576241 PABPC1LQ4VXU2 614 aaKnown RBP14.94□□□□□ -0.02
CCDC40-216ENST00000576241 SEZ6Q53EL9 994 aa14.94□□□□□ -0.02
CCDC40-216ENST00000576241 VARS2Q5ST30 1063 aaKnown RBP14.94□□□□□ -0.02
CCDC40-216ENST00000576241 SLC8B1Q6J4K2 584 aa14.94□□□□□ -0.02
CCDC40-216ENST00000576241 RSPO2Q6UXX9 243 aaPredicted RBP14.94□□□□□ -0.02
CCDC40-216ENST00000576241 MTSS1LQ765P7 747 aa14.94□□□□□ -0.02
CCDC40-216ENST00000576241 HAUS6Q7Z4H7 955 aa14.94□□□□□ -0.02
CCDC40-216ENST00000576241 GPR152Q8TDT2 470 aa14.94□□□□□ -0.02
CCDC40-216ENST00000576241 FGF13Q92913 245 aa14.94□□□□□ -0.02
CCDC40-216ENST00000576241 CA14Q9ULX7 337 aa14.94□□□□□ -0.02
CCDC40-216ENST00000576241 GTF3C5Q9Y5Q8 519 aaPredicted RBP14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms