RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 CFAP58Q5T655 872 aa7.57□□□□□ -1.2
VPS53-217ENST00000575100 FKBP1CQ5VVH2 108 aa7.57□□□□□ -1.2
VPS53-217ENST00000575100 CLEC10AQ8IUN9 316 aa7.57□□□□□ -1.2
VPS53-217ENST00000575100 NECAB1Q8N987 351 aa7.57□□□□□ -1.2
VPS53-217ENST00000575100 ZNF527Q8NB42 609 aa7.57□□□□□ -1.2
VPS53-217ENST00000575100 ZMIZ2Q8NF64 920 aa7.57□□□□□ -1.2
VPS53-217ENST00000575100 PHKBQ93100 1093 aa7.57□□□□□ -1.2
VPS53-217ENST00000575100 C1GALT1C1Q96EU7 318 aa7.57□□□□□ -1.2
VPS53-217ENST00000575100 MRGPRX3Q96LB0 322 aa7.57□□□□□ -1.2
VPS53-217ENST00000575100 YY1AP1Q9H869 796 aa7.57□□□□□ -1.2
VPS53-217ENST00000575100 LY9Q9HBG7 655 aa7.57□□□□□ -1.2
VPS53-217ENST00000575100 OLA1Q9NTK5 396 aaKnown RBP7.57□□□□□ -1.2
VPS53-217ENST00000575100 SERPINB13Q9UIV8 391 aa7.57□□□□□ -1.2
VPS53-217ENST00000575100 ZKSCAN5Q9Y2L8 839 aa7.57□□□□□ -1.2
VPS53-217ENST00000575100 TRAF6Q9Y4K3 522 aa7.57□□□□□ -1.2
VPS53-217ENST00000575100 PCDHA9Q9Y5H5 950 aa7.57□□□□□ -1.2
VPS53-217ENST00000575100 MMP20O60882 483 aa7.56□□□□□ -1.2
VPS53-217ENST00000575100 UBXN7O94888 489 aa7.56□□□□□ -1.2
VPS53-217ENST00000575100 RXRAP19793 462 aa7.56□□□□□ -1.2
VPS53-217ENST00000575100 ARNTP27540 789 aa7.56□□□□□ -1.2
VPS53-217ENST00000575100 TECP42680 631 aa7.56□□□□□ -1.2
VPS53-217ENST00000575100 KPNA1P52294 538 aaPredicted RBP7.56□□□□□ -1.2
VPS53-217ENST00000575100 ADKP55263 362 aaKnown RBP7.56□□□□□ -1.2
VPS53-217ENST00000575100 TFAP4Q01664 338 aa7.56□□□□□ -1.2
VPS53-217ENST00000575100 SEC23AQ15436 765 aa7.56□□□□□ -1.2
VPS53-217ENST00000575100 TAF5Q15542 800 aa7.56□□□□□ -1.2
VPS53-217ENST00000575100 CLUL1Q15846 466 aa7.56□□□□□ -1.2
VPS53-217ENST00000575100 SLC9C1Q4G0N8 1177 aa7.56□□□□□ -1.2
VPS53-217ENST00000575100 HSF5Q4G112 596 aaPredicted RBP7.56□□□□□ -1.2
VPS53-217ENST00000575100 TXNDC11Q6PKC3 985 aa7.56□□□□□ -1.2
VPS53-217ENST00000575100 FAM83AQ86UY5 434 aa7.56□□□□□ -1.2
VPS53-217ENST00000575100 LRRTM4Q86VH4 590 aa7.56□□□□□ -1.2
VPS53-217ENST00000575100 VSIG1Q86XK7 387 aa7.56□□□□□ -1.2
VPS53-217ENST00000575100 MIER2Q8N344 545 aa7.56□□□□□ -1.2
VPS53-217ENST00000575100 CAMKK1Q8N5S9 505 aa7.56□□□□□ -1.2
VPS53-217ENST00000575100 MGARPQ8TDB4 240 aa7.56□□□□□ -1.2
VPS53-217ENST00000575100 UCMAQ8WVF2 138 aa7.56□□□□□ -1.2
VPS53-217ENST00000575100 LMBR1Q8WVP7 490 aa7.56□□□□□ -1.2
VPS53-217ENST00000575100 FAM151AQ8WW52 585 aa7.56□□□□□ -1.2
VPS53-217ENST00000575100 NXPE3Q969Y0 559 aa7.56□□□□□ -1.2
VPS53-217ENST00000575100 GMCL1Q96IK5 515 aa7.56□□□□□ -1.2
VPS53-217ENST00000575100 SDF4Q9BRK5 362 aa7.56□□□□□ -1.2
VPS53-217ENST00000575100 LRFN3Q9BTN0 628 aa7.56□□□□□ -1.2
VPS53-217ENST00000575100 MYL10Q9BUA6 226 aa7.56□□□□□ -1.2
VPS53-217ENST00000575100 KRT23Q9C075 422 aa7.56□□□□□ -1.2
VPS53-217ENST00000575100 MAGEH1Q9H213 219 aa7.56□□□□□ -1.2
VPS53-217ENST00000575100 RNF41Q9H4P4 317 aaPredicted RBP7.56□□□□□ -1.2
VPS53-217ENST00000575100 STARD7Q9NQZ5 370 aa7.56□□□□□ -1.2
VPS53-217ENST00000575100 B4GALT6Q9UBX8 382 aa7.56□□□□□ -1.2
VPS53-217ENST00000575100 AASSQ9UDR5 926 aa7.56□□□□□ -1.2
VPS53-217ENST00000575100 HERC5Q9UII4 1024 aaKnown RBP7.56□□□□□ -1.2
VPS53-217ENST00000575100 LIMCH1Q9UPQ0 1083 aa7.56□□□□□ -1.2
VPS53-217ENST00000575100 PCDHGB2Q9Y5G2 931 aa7.56□□□□□ -1.2
VPS53-217ENST00000575100 CSADQ9Y600 493 aa7.56□□□□□ -1.2
VPS53-217ENST00000575100 HTTP42858 3142 aa7.55□□□□□ -1.2
VPS53-217ENST00000575100 WDR64B1ANS9 1081 aa7.55□□□□□ -1.2
VPS53-217ENST00000575100 B4DLN1 442 aa7.55□□□□□ -1.2
VPS53-217ENST00000575100 H7C0S8 307 aa7.55□□□□□ -1.2
VPS53-217ENST00000575100 HOXC11O43248 304 aaPredicted RBP7.55□□□□□ -1.2
VPS53-217ENST00000575100 MAN1A2O60476 641 aa7.55□□□□□ -1.2
VPS53-217ENST00000575100 TLR2O60603 784 aa7.55□□□□□ -1.2
VPS53-217ENST00000575100 EOMESO95936 686 aa7.55□□□□□ -1.2
VPS53-217ENST00000575100 CETPP11597 493 aa7.55□□□□□ -1.2
VPS53-217ENST00000575100 HOXB1P14653 301 aaPredicted RBP7.55□□□□□ -1.2
VPS53-217ENST00000575100 AGFG1P52594 562 aaKnown RBP7.55□□□□□ -1.2
VPS53-217ENST00000575100 MAPK10P53779 464 aa7.55□□□□□ -1.2
VPS53-217ENST00000575100 NR1H2P55055 460 aa7.55□□□□□ -1.2
VPS53-217ENST00000575100 PDE4BQ07343 736 aa7.55□□□□□ -1.2
VPS53-217ENST00000575100 PPIL2Q13356 520 aa7.55□□□□□ -1.2
VPS53-217ENST00000575100 BROXQ5VW32 411 aa7.55□□□□□ -1.2
VPS53-217ENST00000575100 RCSD1Q6JBY9 416 aa7.55□□□□□ -1.2
VPS53-217ENST00000575100 NPNTQ6UXI9 565 aa7.55□□□□□ -1.2
VPS53-217ENST00000575100 MIGA2Q7L4E1 593 aa7.55□□□□□ -1.2
VPS53-217ENST00000575100 SDCCAG8Q86SQ7 713 aaPredicted RBP7.55□□□□□ -1.2
VPS53-217ENST00000575100 ERO1BQ86YB8 467 aa7.55□□□□□ -1.2
VPS53-217ENST00000575100 SIAH1Q8IUQ4 282 aa7.55□□□□□ -1.2
VPS53-217ENST00000575100 FBXL16Q8N461 479 aa7.55□□□□□ -1.2
VPS53-217ENST00000575100 BVESQ8NE79 360 aa7.55□□□□□ -1.2
VPS53-217ENST00000575100 ESR2Q92731 530 aa7.55□□□□□ -1.2
VPS53-217ENST00000575100 MKNK2Q9HBH9 465 aa7.55□□□□□ -1.2
VPS53-217ENST00000575100 CYP26B1Q9NR63 512 aa7.55□□□□□ -1.2
VPS53-217ENST00000575100 FAM86C1Q9NVL1 165 aa7.55□□□□□ -1.2
VPS53-217ENST00000575100 PTPRFP10586 1907 aa7.55□□□□□ -1.2
VPS53-217ENST00000575100 ADGRA2Q96PE1 1338 aa7.55□□□□□ -1.2
VPS53-217ENST00000575100 PGPEP1LA6NFU8 196 aa7.55□□□□□ -1.2
VPS53-217ENST00000575100 RHPN2P1A8MT19 583 aa7.55□□□□□ -1.2
VPS53-217ENST00000575100 IFIT3O14879 490 aaKnown RBP7.55□□□□□ -1.2
VPS53-217ENST00000575100 USO1O60763 962 aaKnown RBP7.55□□□□□ -1.2
VPS53-217ENST00000575100 ATP4AP20648 1035 aa7.55□□□□□ -1.2
VPS53-217ENST00000575100 LACTBP83111 547 aaPredicted RBP7.55□□□□□ -1.2
VPS53-217ENST00000575100 SCRN1Q12765 414 aa7.55□□□□□ -1.2
VPS53-217ENST00000575100 CDC16Q13042 620 aa7.55□□□□□ -1.2
VPS53-217ENST00000575100 CUL4AQ13619 759 aa7.55□□□□□ -1.2
VPS53-217ENST00000575100 SCARB2Q14108 478 aa7.55□□□□□ -1.2
VPS53-217ENST00000575100 BECN1Q14457 450 aa7.55□□□□□ -1.2
VPS53-217ENST00000575100 MBTPS1Q14703 1052 aa7.55□□□□□ -1.2
VPS53-217ENST00000575100 CLEC16AQ2KHT3 1053 aa7.55□□□□□ -1.2
VPS53-217ENST00000575100 ARMC4Q5T2S8 1044 aa7.55□□□□□ -1.2
VPS53-217ENST00000575100 ISM2Q6H9L7 571 aa7.55□□□□□ -1.2
VPS53-217ENST00000575100 TATDN1Q6P1N9 297 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms