RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 DCXO43602 365 aa8.85□□□□□ -0.99
VPS53-214ENST00000572607 GDF9O60383 454 aa8.85□□□□□ -0.99
VPS53-214ENST00000572607 CUTAO60888 179 aa8.85□□□□□ -0.99
VPS53-214ENST00000572607 YEATS4O95619 227 aa8.85□□□□□ -0.99
VPS53-214ENST00000572607 ADH1AP07327 375 aa8.85□□□□□ -0.99
VPS53-214ENST00000572607 ZNF131P52739 623 aa8.85□□□□□ -0.99
VPS53-214ENST00000572607 ITIH3Q06033 890 aa8.85□□□□□ -0.99
VPS53-214ENST00000572607 ELAVL2Q12926 359 aaKnown RBP8.85□□□□□ -0.99
VPS53-214ENST00000572607 BECN1Q14457 450 aa8.85□□□□□ -0.99
VPS53-214ENST00000572607 USP41Q3LFD5 358 aa8.85□□□□□ -0.99
VPS53-214ENST00000572607 FOXD4L6Q3SYB3 417 aaPredicted RBP8.85□□□□□ -0.99
VPS53-214ENST00000572607 GLRA4Q5JXX5 417 aa8.85□□□□□ -0.99
VPS53-214ENST00000572607 ATL3Q6DD88 541 aa8.85□□□□□ -0.99
VPS53-214ENST00000572607 FOXD4L3Q6VB84 417 aaPredicted RBP8.85□□□□□ -0.99
VPS53-214ENST00000572607 USP49Q70CQ1 688 aa8.85□□□□□ -0.99
VPS53-214ENST00000572607 LINC00301Q8NCQ3 95 aa8.85□□□□□ -0.99
VPS53-214ENST00000572607 GSTCDQ8NEC7 633 aa8.85□□□□□ -0.99
VPS53-214ENST00000572607 PRSS33Q8NF86 280 aa8.85□□□□□ -0.99
VPS53-214ENST00000572607 VN1R2Q8NFZ6 395 aa8.85□□□□□ -0.99
VPS53-214ENST00000572607 KCNG4Q8TDN1 519 aa8.85□□□□□ -0.99
VPS53-214ENST00000572607 ZNF775Q96BV0 537 aaPredicted RBP8.85□□□□□ -0.99
VPS53-214ENST00000572607 RIPOR3Q96MK2 946 aa8.85□□□□□ -0.99
VPS53-214ENST00000572607 NECTIN4Q96NY8 510 aa8.85□□□□□ -0.99
VPS53-214ENST00000572607 KLHL5Q96PQ7 755 aa8.85□□□□□ -0.99
VPS53-214ENST00000572607 VN1R3Q9BXE9 311 aa8.85□□□□□ -0.99
VPS53-214ENST00000572607 PTPRHQ9HD43 1115 aa8.85□□□□□ -0.99
VPS53-214ENST00000572607 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP8.85□□□□□ -0.99
VPS53-214ENST00000572607 TFIP11Q9UBB9 837 aaKnown RBP8.85□□□□□ -0.99
VPS53-214ENST00000572607 TBX20Q9UMR3 447 aa8.85□□□□□ -0.99
VPS53-214ENST00000572607 USP15Q9Y4E8 981 aaPredicted RBP8.85□□□□□ -0.99
VPS53-214ENST00000572607 PLXNA4Q9HCM2 1894 aa8.85□□□□□ -0.99
VPS53-214ENST00000572607 VPS13AQ96RL7 3174 aa8.85□□□□□ -0.99
VPS53-214ENST00000572607 ZDBF2Q9HCK1 2354 aa8.84□□□□□ -0.99
VPS53-214ENST00000572607 TRAPPC3O43617 180 aa8.84□□□□□ -0.99
VPS53-214ENST00000572607 B3GAT3O94766 335 aa8.84□□□□□ -0.99
VPS53-214ENST00000572607 KIF4AO95239 1232 aa8.84□□□□□ -0.99
VPS53-214ENST00000572607 BRD1O95696 1058 aa8.84□□□□□ -0.99
VPS53-214ENST00000572607 ALADP13716 330 aa8.84□□□□□ -0.99
VPS53-214ENST00000572607 IDEP14735 1019 aa8.84□□□□□ -0.99
VPS53-214ENST00000572607 GAP43P17677 238 aa8.84□□□□□ -0.99
VPS53-214ENST00000572607 PROZP22891 400 aa8.84□□□□□ -0.99
VPS53-214ENST00000572607 ME1P48163 572 aa8.84□□□□□ -0.99
VPS53-214ENST00000572607 RBM10P98175 930 aaKnown RBP8.84□□□□□ -0.99
VPS53-214ENST00000572607 AMPD3Q01432 767 aa8.84□□□□□ -0.99
VPS53-214ENST00000572607 DSG1Q02413 1049 aa8.84□□□□□ -0.99
VPS53-214ENST00000572607 MCL1Q07820 350 aa8.84□□□□□ -0.99
VPS53-214ENST00000572607 KCNC3Q14003 757 aa8.84□□□□□ -0.99
VPS53-214ENST00000572607 CBX2Q14781 532 aaPredicted RBP8.84□□□□□ -0.99
VPS53-214ENST00000572607 ATAT1Q5SQI0 421 aa8.84□□□□□ -0.99
VPS53-214ENST00000572607 PDXDC1Q6P996 788 aa8.84□□□□□ -0.99
VPS53-214ENST00000572607 DYMQ7RTS9 669 aa8.84□□□□□ -0.99
VPS53-214ENST00000572607 TAS1R3Q7RTX0 852 aa8.84□□□□□ -0.99
VPS53-214ENST00000572607 CEP57Q86XR8 500 aa8.84□□□□□ -0.99
VPS53-214ENST00000572607 GPR65Q8IYL9 337 aa8.84□□□□□ -0.99
VPS53-214ENST00000572607 PDILTQ8N807 584 aa8.84□□□□□ -0.99
VPS53-214ENST00000572607 CEP120Q8N960 986 aa8.84□□□□□ -0.99
VPS53-214ENST00000572607 KCNN1Q92952 543 aa8.84□□□□□ -0.99
VPS53-214ENST00000572607 HVCN1Q96D96 273 aa8.84□□□□□ -0.99
VPS53-214ENST00000572607 APOL5Q9BWW9 433 aa8.84□□□□□ -0.99
VPS53-214ENST00000572607 PHF7Q9BWX1 381 aaPredicted RBP8.84□□□□□ -0.99
VPS53-214ENST00000572607 PANK2Q9BZ23 570 aa8.84□□□□□ -0.99
VPS53-214ENST00000572607 KCNH6Q9H252 994 aa8.84□□□□□ -0.99
VPS53-214ENST00000572607 CUEDC2Q9H467 287 aa8.84□□□□□ -0.99
VPS53-214ENST00000572607 SFXN1Q9H9B4 322 aa8.84□□□□□ -0.99
VPS53-214ENST00000572607 FAM13BQ9NYF5 915 aa8.84□□□□□ -0.99
VPS53-214ENST00000572607 SEL1LQ9UBV2 794 aa8.84□□□□□ -0.99
VPS53-214ENST00000572607 EXOC7Q9UPT5 735 aa8.84□□□□□ -0.99
VPS53-214ENST00000572607 ATP6V1DQ9Y5K8 247 aa8.84□□□□□ -0.99
VPS53-214ENST00000572607 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.84□□□□□ -0.99
VPS53-214ENST00000572607 CACNA1HO95180 2353 aa8.83□□□□□ -1
VPS53-214ENST00000572607 SMIM28A0A1B0GU29 152 aa8.83□□□□□ -1
VPS53-214ENST00000572607 TMEM189-UBE2V1I3L0A0 370 aa8.83□□□□□ -1
VPS53-214ENST00000572607 XPOTO43592 962 aaKnown RBP8.83□□□□□ -1
VPS53-214ENST00000572607 GLUD1P00367 558 aa8.83□□□□□ -1
VPS53-214ENST00000572607 PIGRP01833 764 aa8.83□□□□□ -1
VPS53-214ENST00000572607 CLTAP09496 248 aa8.83□□□□□ -1
VPS53-214ENST00000572607 CNPP09543 421 aaKnown RBP8.83□□□□□ -1
VPS53-214ENST00000572607 EPCAMP16422 314 aa8.83□□□□□ -1
VPS53-214ENST00000572607 NMT1P30419 496 aaKnown RBP8.83□□□□□ -1
VPS53-214ENST00000572607 MTHFRP42898 656 aa8.83□□□□□ -1
VPS53-214ENST00000572607 PPP2R3AQ06190 1150 aa8.83□□□□□ -1
VPS53-214ENST00000572607 RARS2Q5T160 578 aaKnown RBP8.83□□□□□ -1
VPS53-214ENST00000572607 FAM171A1Q5VUB5 890 aa8.83□□□□□ -1
VPS53-214ENST00000572607 SLFN12LQ6IEE8 588 aa8.83□□□□□ -1
VPS53-214ENST00000572607 SYCE2Q6PIF2 218 aa8.83□□□□□ -1
VPS53-214ENST00000572607 DCLRE1AQ6PJP8 1040 aa8.83□□□□□ -1
VPS53-214ENST00000572607 PDZRN4Q6ZMN7 1036 aaPredicted RBP8.83□□□□□ -1
VPS53-214ENST00000572607 STXBP4Q6ZWJ1 553 aa8.83□□□□□ -1
VPS53-214ENST00000572607 TAS1R1Q7RTX1 841 aa8.83□□□□□ -1
VPS53-214ENST00000572607 METTL3Q86U44 580 aaKnown RBP8.83□□□□□ -1
VPS53-214ENST00000572607 MAP4K3Q8IVH8 894 aa8.83□□□□□ -1
VPS53-214ENST00000572607 CCDC65Q8IXS2 484 aa8.83□□□□□ -1
VPS53-214ENST00000572607 RNF168Q8IYW5 571 aaPredicted RBP8.83□□□□□ -1
VPS53-214ENST00000572607 IQUBQ8NA54 791 aa8.83□□□□□ -1
VPS53-214ENST00000572607 LRRC15Q8TF66 581 aa8.83□□□□□ -1
VPS53-214ENST00000572607 HASPINQ8TF76 798 aa8.83□□□□□ -1
VPS53-214ENST00000572607 SLC22A17Q8WUG5 538 aa8.83□□□□□ -1
VPS53-214ENST00000572607 RIN2Q8WYP3 895 aaPredicted RBP8.83□□□□□ -1
VPS53-214ENST00000572607 RABGGTAQ92696 567 aa8.83□□□□□ -1
VPS53-214ENST00000572607 ZBTB45Q96K62 511 aaPredicted RBP8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms