RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, human

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-238	ENST00000569430	CRLF3	Q8IUI8	442 aa		12.07	□□□□□ -0.48
CLN3-238	ENST00000569430	ATP2A3	Q93084	1043 aa		12.07	□□□□□ -0.48
CLN3-238	ENST00000569430	NINJ2	Q9NZG7	142 aa		12.07	□□□□□ -0.48
CLN3-238	ENST00000569430	C2CD2	Q9Y426	696 aa		12.07	□□□□□ -0.48
CLN3-238	ENST00000569430	TRPM3	Q9HCF6	1732 aa	Predicted RBP	12.06	□□□□□ -0.48
CLN3-238	ENST00000569430	MYH6	P13533	1939 aa		12.06	□□□□□ -0.48
CLN3-238	ENST00000569430	PKN2	Q16513	984 aa	Known RBP	12.06	□□□□□ -0.48
CLN3-238	ENST00000569430	DAB2IP	Q5VWQ8	1189 aa		12.06	□□□□□ -0.48
CLN3-238	ENST00000569430	FAM196A	Q6ZSG2	479 aa		12.06	□□□□□ -0.48
CLN3-238	ENST00000569430	DEPTOR	Q8TB45	409 aa		12.06	□□□□□ -0.48
CLN3-238	ENST00000569430	SPOCK2	Q92563	424 aa		12.06	□□□□□ -0.48
CLN3-238	ENST00000569430	TLCD1	Q96CP7	247 aa		12.06	□□□□□ -0.48
CLN3-238	ENST00000569430	NSL1	Q96IY1	281 aa		12.06	□□□□□ -0.48
CLN3-238	ENST00000569430	PI4KB	Q9UBF8	816 aa		12.06	□□□□□ -0.48
CLN3-238	ENST00000569430	NXF1	Q9UBU9	619 aa	Known RBP	12.06	□□□□□ -0.48
CLN3-238	ENST00000569430	GTF3C4	Q9UKN8	822 aa		12.06	□□□□□ -0.48
CLN3-238	ENST00000569430	FAF1	Q9UNN5	650 aa	Predicted RBP	12.06	□□□□□ -0.48
CLN3-238	ENST00000569430		H0YGN5	161 aa		12.06	□□□□□ -0.48
CLN3-238	ENST00000569430	RRM1	P23921	792 aa		12.06	□□□□□ -0.48
CLN3-238	ENST00000569430	PTDSS1	P48651	473 aa	Known RBP	12.06	□□□□□ -0.48
CLN3-238	ENST00000569430	CACNA2D1	P54289	1103 aa		12.06	□□□□□ -0.48
CLN3-238	ENST00000569430	SH2D4B	Q5SQS7	431 aa		12.06	□□□□□ -0.48
CLN3-238	ENST00000569430	ARHGEF19	Q8IW93	802 aa		12.06	□□□□□ -0.48
CLN3-238	ENST00000569430	ATP11C	Q8NB49	1132 aa		12.06	□□□□□ -0.48
CLN3-238	ENST00000569430	FAM81B	Q96LP2	452 aa		12.06	□□□□□ -0.48
CLN3-238	ENST00000569430	DDX50	Q9BQ39	737 aa	Known RBP	12.06	□□□□□ -0.48
CLN3-238	ENST00000569430	MKNK1	Q9BUB5	465 aa		12.06	□□□□□ -0.48
CLN3-238	ENST00000569430	SENP1	Q9P0U3	644 aa		12.06	□□□□□ -0.48
CLN3-238	ENST00000569430	WHRN	Q9P202	907 aa		12.06	□□□□□ -0.48
CLN3-238	ENST00000569430	MAGED2	Q9UNF1	606 aa	Predicted RBP	12.06	□□□□□ -0.48
CLN3-238	ENST00000569430	NFS1	Q9Y697	457 aa		12.06	□□□□□ -0.48
CLN3-238	ENST00000569430	KCP	Q6ZWJ8	1503 aa		12.06	□□□□□ -0.48
CLN3-238	ENST00000569430	AFF2	P51816	1311 aa		12.06	□□□□□ -0.48
CLN3-238	ENST00000569430	CLRN2	A0PK11	232 aa		12.06	□□□□□ -0.48
CLN3-238	ENST00000569430	MCF2L	O15068	1137 aa		12.06	□□□□□ -0.48
CLN3-238	ENST00000569430	RFX1	P22670	979 aa		12.06	□□□□□ -0.48
CLN3-238	ENST00000569430	BRD2	P25440	801 aa	Known RBP	12.06	□□□□□ -0.48
CLN3-238	ENST00000569430	YY1	P25490	414 aa		12.06	□□□□□ -0.48
CLN3-238	ENST00000569430	KRT81	Q14533	505 aa		12.06	□□□□□ -0.48
CLN3-238	ENST00000569430	ISLR2	Q6UXK2	745 aa		12.06	□□□□□ -0.48
CLN3-238	ENST00000569430	KCTD6	Q8NC69	237 aa		12.06	□□□□□ -0.48
CLN3-238	ENST00000569430	MAGEC3	Q8TD91	643 aa		12.06	□□□□□ -0.48
CLN3-238	ENST00000569430	ZNF384	Q8TF68	577 aa		12.06	□□□□□ -0.48
CLN3-238	ENST00000569430	HSPH1	Q92598	858 aa		12.06	□□□□□ -0.48
CLN3-238	ENST00000569430	MTBP	Q96DY7	904 aa		12.06	□□□□□ -0.48
CLN3-238	ENST00000569430	BCAS3	Q9H6U6	928 aa		12.06	□□□□□ -0.48
CLN3-238	ENST00000569430	PSMC3IP	Q9P2W1	217 aa	Predicted RBP	12.06	□□□□□ -0.48
CLN3-238	ENST00000569430	CHMP2B	Q9UQN3	213 aa		12.06	□□□□□ -0.48
CLN3-238	ENST00000569430	SMARCA1	P28370	1054 aa		12.05	□□□□□ -0.48
CLN3-238	ENST00000569430	PPP4C	P60510	307 aa		12.05	□□□□□ -0.48
CLN3-238	ENST00000569430	DEUP1	Q05D60	604 aa		12.05	□□□□□ -0.48
CLN3-238	ENST00000569430	DYNC1I2	Q13409	638 aa	Known RBP	12.05	□□□□□ -0.48
CLN3-238	ENST00000569430	MAP7D1	Q3KQU3	841 aa		12.05	□□□□□ -0.48
CLN3-238	ENST00000569430	ACAP3	Q96P50	834 aa		12.05	□□□□□ -0.48
CLN3-238	ENST00000569430	KIFC3	Q9BVG8	833 aa		12.05	□□□□□ -0.48
CLN3-238	ENST00000569430	MTFR1L	Q9H019	292 aa		12.05	□□□□□ -0.48
CLN3-238	ENST00000569430	C5orf60	A6NFR6	353 aa		12.05	□□□□□ -0.48
CLN3-238	ENST00000569430	ANKRD63	C9JTQ0	380 aa		12.05	□□□□□ -0.48
CLN3-238	ENST00000569430		F5H423	210 aa	Predicted RBP	12.05	□□□□□ -0.48
CLN3-238	ENST00000569430	SLC12A3	P55017	1021 aa		12.05	□□□□□ -0.48
CLN3-238	ENST00000569430	LAMB3	Q13751	1172 aa		12.05	□□□□□ -0.48
CLN3-238	ENST00000569430	ARSH	Q5FYA8	562 aa		12.05	□□□□□ -0.48
CLN3-238	ENST00000569430	PCNX4	Q63HM2	1172 aa		12.05	□□□□□ -0.48
CLN3-238	ENST00000569430	CBWD2	Q8IUF1	395 aa		12.05	□□□□□ -0.48
CLN3-238	ENST00000569430	NUDCD3	Q8IVD9	361 aa		12.05	□□□□□ -0.48
CLN3-238	ENST00000569430	SLC25A41	Q8N5S1	370 aa		12.05	□□□□□ -0.48
CLN3-238	ENST00000569430	RBM41	Q96IZ5	413 aa	Known RBP	12.05	□□□□□ -0.48
CLN3-238	ENST00000569430	FAM111A	Q96PZ2	611 aa		12.05	□□□□□ -0.48
CLN3-238	ENST00000569430	MANSC1	Q9H8J5	431 aa		12.05	□□□□□ -0.48
CLN3-238	ENST00000569430	LRRC4B	Q9NT99	713 aa		12.05	□□□□□ -0.48
CLN3-238	ENST00000569430	ARMCX1	Q9P291	453 aa		12.05	□□□□□ -0.48
CLN3-238	ENST00000569430	CRYBG1	Q9Y4K1	1723 aa		12.05	□□□□□ -0.48
CLN3-238	ENST00000569430	FGR	P09769	529 aa		12.05	□□□□□ -0.48
CLN3-238	ENST00000569430	PTPN4	P29074	926 aa		12.05	□□□□□ -0.48
CLN3-238	ENST00000569430	PEX5	P50542	639 aa		12.05	□□□□□ -0.48
CLN3-238	ENST00000569430	RIPK1	Q13546	671 aa		12.05	□□□□□ -0.48
CLN3-238	ENST00000569430	MTFR1	Q15390	333 aa		12.05	□□□□□ -0.48
CLN3-238	ENST00000569430	SNRNP35	Q16560	246 aa	Known RBP	12.05	□□□□□ -0.48
CLN3-238	ENST00000569430	SLC35G1	Q2M3R5	365 aa		12.05	□□□□□ -0.48
CLN3-238	ENST00000569430	CEP55	Q53EZ4	464 aa		12.05	□□□□□ -0.48
CLN3-238	ENST00000569430	SCG3	Q8WXD2	468 aa	Known RBP	12.05	□□□□□ -0.48
CLN3-238	ENST00000569430	SEPT9	Q9UHD8	586 aa	Predicted RBP	12.05	□□□□□ -0.48
CLN3-238	ENST00000569430	NARF	Q9UHQ1	456 aa		12.05	□□□□□ -0.48
CLN3-238	ENST00000569430	SUGT1	Q9Y2Z0	365 aa		12.05	□□□□□ -0.48
CLN3-238	ENST00000569430	GPR75-ASB3	A0A0A6YYF3	556 aa		12.04	□□□□□ -0.48
CLN3-238	ENST00000569430	DPPA5	A6NC42	116 aa		12.04	□□□□□ -0.48
CLN3-238	ENST00000569430	EML1	O00423	815 aa		12.04	□□□□□ -0.48
CLN3-238	ENST00000569430	KRT37	O76014	449 aa		12.04	□□□□□ -0.48
CLN3-238	ENST00000569430	PSMA2	P25787	234 aa		12.04	□□□□□ -0.48
CLN3-238	ENST00000569430	GNA15	P30679	374 aa		12.04	□□□□□ -0.48
CLN3-238	ENST00000569430	PSEN1	P49768	467 aa		12.04	□□□□□ -0.48
CLN3-238	ENST00000569430	ZNF268	Q14587	947 aa	Predicted RBP	12.04	□□□□□ -0.48
CLN3-238	ENST00000569430	KIF22	Q14807	665 aa		12.04	□□□□□ -0.48
CLN3-238	ENST00000569430	ZCWPW2	Q504Y3	356 aa		12.04	□□□□□ -0.48
CLN3-238	ENST00000569430	TTC27	Q6P3X3	843 aa		12.04	□□□□□ -0.48
CLN3-238	ENST00000569430	PIGW	Q7Z7B1	504 aa		12.04	□□□□□ -0.48
CLN3-238	ENST00000569430	ARID3B	Q8IVW6	561 aa	Predicted RBP	12.04	□□□□□ -0.48
CLN3-238	ENST00000569430	RASGEF1C	Q8N431	466 aa		12.04	□□□□□ -0.48
CLN3-238	ENST00000569430	ZNF317	Q96PQ6	595 aa	Predicted RBP	12.04	□□□□□ -0.48
CLN3-238	ENST00000569430	FERMT1	Q9BQL6	677 aa		12.04	□□□□□ -0.48

Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms