RNA–Protein interactions for RNA: ENST00000569136.5

CAPN3-219, Transcript of calpain 3, humanhuman

TSL 2 BASIC

Gene CAPN3, Length 1,029 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-219ENST00000569136 CHD7Q9P2D1 2997 aa10.09□□□□□ -0.79
CAPN3-219ENST00000569136 INPPL1O15357 1258 aa10.09□□□□□ -0.79
CAPN3-219ENST00000569136 ITGB1P05556 798 aa10.09□□□□□ -0.79
CAPN3-219ENST00000569136 PRKCBP05771 671 aa10.09□□□□□ -0.79
CAPN3-219ENST00000569136 KRT18P05783 430 aaKnown RBP10.09□□□□□ -0.79
CAPN3-219ENST00000569136 VSIG8P0DPA2 414 aa10.09□□□□□ -0.79
CAPN3-219ENST00000569136 ATF7P17544 494 aaPredicted RBP10.09□□□□□ -0.79
CAPN3-219ENST00000569136 PLCG1P19174 1290 aa10.09□□□□□ -0.79
CAPN3-219ENST00000569136 GATMP50440 423 aa10.09□□□□□ -0.79
CAPN3-219ENST00000569136 RNASELQ05823 741 aaKnown RBP10.09□□□□□ -0.79
CAPN3-219ENST00000569136 KARSQ15046 597 aaKnown RBP10.09□□□□□ -0.79
CAPN3-219ENST00000569136 KCNT2Q6UVM3 1135 aa10.09□□□□□ -0.79
CAPN3-219ENST00000569136 AGMOQ6ZNB7 445 aa10.09□□□□□ -0.79
CAPN3-219ENST00000569136 LRRC55Q6ZSA7 311 aa10.09□□□□□ -0.79
CAPN3-219ENST00000569136 SV2BQ7L1I2 683 aa10.09□□□□□ -0.79
CAPN3-219ENST00000569136 GPBP1Q86WP2 473 aa10.09□□□□□ -0.79
CAPN3-219ENST00000569136 THNSL1Q8IYQ7 743 aa10.09□□□□□ -0.79
CAPN3-219ENST00000569136 COLGALT1Q8NBJ5 622 aa10.09□□□□□ -0.79
CAPN3-219ENST00000569136 SMG8Q8ND04 991 aaKnown RBP10.09□□□□□ -0.79
CAPN3-219ENST00000569136 HELQQ8TDG4 1101 aa10.09□□□□□ -0.79
CAPN3-219ENST00000569136 MICAL1Q8TDZ2 1067 aa10.09□□□□□ -0.79
CAPN3-219ENST00000569136 GDPD5Q8WTR4 605 aa10.09□□□□□ -0.79
CAPN3-219ENST00000569136 BSNDQ8WZ55 320 aa10.09□□□□□ -0.79
CAPN3-219ENST00000569136 LARP4BQ92615 738 aaKnown RBP10.09□□□□□ -0.79
CAPN3-219ENST00000569136 IFT43Q96FT9 208 aa10.09□□□□□ -0.79
CAPN3-219ENST00000569136 MYO19Q96H55 970 aa10.09□□□□□ -0.79
CAPN3-219ENST00000569136 CPB2Q96IY4 423 aa10.09□□□□□ -0.79
CAPN3-219ENST00000569136 EPSTI1Q96J88 318 aa10.09□□□□□ -0.79
CAPN3-219ENST00000569136 FAM193BQ96PV7 902 aaPredicted RBP10.09□□□□□ -0.79
CAPN3-219ENST00000569136 NSUN3Q9H649 340 aaKnown RBP10.09□□□□□ -0.79
CAPN3-219ENST00000569136 RSAD1Q9HA92 442 aa10.09□□□□□ -0.79
CAPN3-219ENST00000569136 BLOC1S4Q9NUP1 217 aa10.09□□□□□ -0.79
CAPN3-219ENST00000569136 ARHGAP28Q9P2N2 729 aa10.09□□□□□ -0.79
CAPN3-219ENST00000569136 IPPQ9Y573 584 aa10.09□□□□□ -0.79
CAPN3-219ENST00000569136 PRRC2BQ5JSZ5 2229 aaKnown RBP10.09□□□□□ -0.79
CAPN3-219ENST00000569136 FSD2A1L4K1 749 aa10.08□□□□□ -0.8
CAPN3-219ENST00000569136 GRM6O15303 877 aa10.08□□□□□ -0.8
CAPN3-219ENST00000569136 BNIP3LO60238 219 aa10.08□□□□□ -0.8
CAPN3-219ENST00000569136 CUTAO60888 179 aa10.08□□□□□ -0.8
CAPN3-219ENST00000569136 FGF18O76093 207 aa10.08□□□□□ -0.8
CAPN3-219ENST00000569136 GMPRP36959 345 aa10.08□□□□□ -0.8
CAPN3-219ENST00000569136 MRPS5P82675 430 aaKnown RBP10.08□□□□□ -0.8
CAPN3-219ENST00000569136 AMPD3Q01432 767 aa10.08□□□□□ -0.8
CAPN3-219ENST00000569136 GRIN1Q05586 938 aa10.08□□□□□ -0.8
CAPN3-219ENST00000569136 STRN3Q13033 797 aa10.08□□□□□ -0.8
CAPN3-219ENST00000569136 DCAF4L1Q3SXM0 396 aa10.08□□□□□ -0.8
CAPN3-219ENST00000569136 ARSHQ5FYA8 562 aa10.08□□□□□ -0.8
CAPN3-219ENST00000569136 SPRED2Q7Z698 418 aa10.08□□□□□ -0.8
CAPN3-219ENST00000569136 PHF6Q8IWS0 365 aaKnown RBP eCLIP10.08□□□□□ -0.8
CAPN3-219ENST00000569136 DAW1Q8N136 415 aa10.08□□□□□ -0.8
CAPN3-219ENST00000569136 MICALL1Q8N3F8 863 aa10.08□□□□□ -0.8
CAPN3-219ENST00000569136 MYCT1Q8N699 235 aa10.08□□□□□ -0.8
CAPN3-219ENST00000569136 POF1BQ8WVV4 589 aa10.08□□□□□ -0.8
CAPN3-219ENST00000569136 LPPQ93052 612 aa10.08□□□□□ -0.8
CAPN3-219ENST00000569136 CNTNAP3BQ96NU0 1288 aa10.08□□□□□ -0.8
CAPN3-219ENST00000569136 CLIC6Q96NY7 704 aa10.08□□□□□ -0.8
CAPN3-219ENST00000569136 PYM1Q9BRP8 204 aaKnown RBP10.08□□□□□ -0.8
CAPN3-219ENST00000569136 TMEM175Q9BSA9 504 aa10.08□□□□□ -0.8
CAPN3-219ENST00000569136 MRPL4Q9BYD3 311 aaKnown RBP10.08□□□□□ -0.8
CAPN3-219ENST00000569136 CNTNAP3Q9BZ76 1288 aa10.08□□□□□ -0.8
CAPN3-219ENST00000569136 CCDC113Q9H0I3 377 aa10.08□□□□□ -0.8
CAPN3-219ENST00000569136 PARVGQ9HBI0 331 aa10.08□□□□□ -0.8
CAPN3-219ENST00000569136 POLD4Q9HCU8 107 aa10.08□□□□□ -0.8
CAPN3-219ENST00000569136 ALG13Q9NP73 1137 aaKnown RBP10.08□□□□□ -0.8
CAPN3-219ENST00000569136 NGRNQ9NPE2 291 aaKnown RBP10.08□□□□□ -0.8
CAPN3-219ENST00000569136 TBC1D13Q9NVG8 400 aa10.08□□□□□ -0.8
CAPN3-219ENST00000569136 RCOR1Q9UKL0 485 aa10.08□□□□□ -0.8
CAPN3-219ENST00000569136 TNFSF13BQ9Y275 285 aa10.08□□□□□ -0.8
CAPN3-219ENST00000569136 TTC28Q96AY4 2481 aa10.08□□□□□ -0.8
CAPN3-219ENST00000569136 COL6A3P12111 3177 aa10.08□□□□□ -0.8
CAPN3-219ENST00000569136 EVPLQ92817 2033 aa10.07□□□□□ -0.8
CAPN3-219ENST00000569136 ZMYM2Q9UBW7 1377 aa10.07□□□□□ -0.8
CAPN3-219ENST00000569136 ARL5CA6NH57 179 aa10.07□□□□□ -0.8
CAPN3-219ENST00000569136 TGFBR3LH3BV60 316 aa10.07□□□□□ -0.8
CAPN3-219ENST00000569136 B4GALT5O43286 388 aa10.07□□□□□ -0.8
CAPN3-219ENST00000569136 TBCAO75347 108 aaKnown RBP10.07□□□□□ -0.8
CAPN3-219ENST00000569136 FAM13AO94988 1023 aa10.07□□□□□ -0.8
CAPN3-219ENST00000569136 BRD1O95696 1058 aa10.07□□□□□ -0.8
CAPN3-219ENST00000569136 GALTP07902 379 aa10.07□□□□□ -0.8
CAPN3-219ENST00000569136 LIG1P18858 919 aa10.07□□□□□ -0.8
CAPN3-219ENST00000569136 BRD2P25440 801 aaKnown RBP10.07□□□□□ -0.8
CAPN3-219ENST00000569136 ZNF131P52739 623 aa10.07□□□□□ -0.8
CAPN3-219ENST00000569136 BCAR1P56945 870 aa10.07□□□□□ -0.8
CAPN3-219ENST00000569136 MAPK7Q13164 816 aa10.07□□□□□ -0.8
CAPN3-219ENST00000569136 GIT2Q14161 759 aa10.07□□□□□ -0.8
CAPN3-219ENST00000569136 SPECC1Q5M775 1068 aa10.07□□□□□ -0.8
CAPN3-219ENST00000569136 NT5DC1Q5TFE4 455 aa10.07□□□□□ -0.8
CAPN3-219ENST00000569136 ATF7IP2Q5U623 682 aa10.07□□□□□ -0.8
CAPN3-219ENST00000569136 USP49Q70CQ1 688 aa10.07□□□□□ -0.8
CAPN3-219ENST00000569136 BTLAQ7Z6A9 289 aa10.07□□□□□ -0.8
CAPN3-219ENST00000569136 DDX53Q86TM3 631 aaKnown RBP10.07□□□□□ -0.8
CAPN3-219ENST00000569136 IQUBQ8NA54 791 aa10.07□□□□□ -0.8
CAPN3-219ENST00000569136 TMEM161BQ8NDZ6 487 aa10.07□□□□□ -0.8
CAPN3-219ENST00000569136 FOXD4L4Q8WXT5 416 aaPredicted RBP10.07□□□□□ -0.8
CAPN3-219ENST00000569136 MRPS27Q92552 414 aaKnown RBP10.07□□□□□ -0.8
CAPN3-219ENST00000569136 TMEM169Q96HH4 297 aa10.07□□□□□ -0.8
CAPN3-219ENST00000569136 CDCA3Q99618 268 aaPredicted RBP10.07□□□□□ -0.8
CAPN3-219ENST00000569136 ACO2Q99798 780 aaKnown RBP10.07□□□□□ -0.8
CAPN3-219ENST00000569136 TCHPQ9BT92 498 aa10.07□□□□□ -0.8
CAPN3-219ENST00000569136 EIF2AQ9BY44 585 aaKnown RBP10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms