RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 SPARCL1Q14515 664 aa15.39■□□□□ 0.05
VPS35-210ENST00000568784 GNPTABQ3T906 1256 aa15.39■□□□□ 0.05
VPS35-210ENST00000568784 SEZ6Q53EL9 994 aa15.39■□□□□ 0.05
VPS35-210ENST00000568784 LONP2Q86WA8 852 aa15.39■□□□□ 0.05
VPS35-210ENST00000568784 IL31RAQ8NI17 732 aa15.39■□□□□ 0.05
VPS35-210ENST00000568784 DTX3LQ8TDB6 740 aa15.39■□□□□ 0.05
VPS35-210ENST00000568784 MCUR1Q96AQ8 359 aa15.39■□□□□ 0.05
VPS35-210ENST00000568784 UBN1Q9NPG3 1134 aa15.39■□□□□ 0.05
VPS35-210ENST00000568784 CFAP69A5D8W1 941 aa15.38■□□□□ 0.05
VPS35-210ENST00000568784 NFIBO00712 420 aa15.38■□□□□ 0.05
VPS35-210ENST00000568784 MAPK13O15264 365 aa15.38■□□□□ 0.05
VPS35-210ENST00000568784 RFX1P22670 979 aa15.38■□□□□ 0.05
VPS35-210ENST00000568784 NOVP48745 357 aa15.38■□□□□ 0.05
VPS35-210ENST00000568784 LIG4P49917 911 aa15.38■□□□□ 0.05
VPS35-210ENST00000568784 BBS9Q3SYG4 887 aa15.38■□□□□ 0.05
VPS35-210ENST00000568784 FYB2Q5VWT5 728 aa15.38■□□□□ 0.05
VPS35-210ENST00000568784 ACAD10Q6JQN1 1059 aa15.38■□□□□ 0.05
VPS35-210ENST00000568784 SV2AQ7L0J3 742 aa15.38■□□□□ 0.05
VPS35-210ENST00000568784 VPS52Q8N1B4 723 aa15.38■□□□□ 0.05
VPS35-210ENST00000568784 RXFP1Q9HBX9 757 aa15.38■□□□□ 0.05
VPS35-210ENST00000568784 NEU2Q9Y3R4 380 aa15.38■□□□□ 0.05
VPS35-210ENST00000568784 PLIN4Q96Q06 1357 aa15.38■□□□□ 0.05
VPS35-210ENST00000568784 RARRES1P49788 294 aa15.38■□□□□ 0.05
VPS35-210ENST00000568784 PKN2Q16513 984 aaKnown RBP15.38■□□□□ 0.05
VPS35-210ENST00000568784 ANKRD20A2Q5SQ80 823 aa15.38■□□□□ 0.05
VPS35-210ENST00000568784 ANKRD20A1Q5TYW2 823 aa15.38■□□□□ 0.05
VPS35-210ENST00000568784 ANKRD20A3Q5VUR7 823 aa15.38■□□□□ 0.05
VPS35-210ENST00000568784 CETPP11597 493 aa15.38■□□□□ 0.05
VPS35-210ENST00000568784 GZMAP12544 262 aa15.38■□□□□ 0.05
VPS35-210ENST00000568784 ECHDC2Q86YB7 292 aa15.38■□□□□ 0.05
VPS35-210ENST00000568784 CFAP57Q96MR6 1250 aa15.38■□□□□ 0.05
VPS35-210ENST00000568784 CRAMP1Q96RY5 1269 aa15.38■□□□□ 0.05
VPS35-210ENST00000568784 HERPUD2Q9BSE4 406 aa15.38■□□□□ 0.05
VPS35-210ENST00000568784 DCLK3Q9C098 648 aa15.38■□□□□ 0.05
VPS35-210ENST00000568784 DMAC2Q9NW81 257 aa15.38■□□□□ 0.05
VPS35-210ENST00000568784 SCN7AQ01118 1682 aa15.37■□□□□ 0.05
VPS35-210ENST00000568784 EPHB2P29323 1055 aa15.37■□□□□ 0.05
VPS35-210ENST00000568784 OSBPL1AQ9BXW6 950 aa15.37■□□□□ 0.05
VPS35-210ENST00000568784 WHRNQ9P202 907 aa15.37■□□□□ 0.05
VPS35-210ENST00000568784 NENFQ9UMX5 172 aa15.37■□□□□ 0.05
VPS35-210ENST00000568784 ITGB5P18084 799 aa15.37■□□□□ 0.05
VPS35-210ENST00000568784 CC2D2BQ6DHV5 1058 aa15.37■□□□□ 0.05
VPS35-210ENST00000568784 FAM71AQ8IYT1 594 aa15.37■□□□□ 0.05
VPS35-210ENST00000568784 GLIS2Q9BZE0 524 aaPredicted RBP15.37■□□□□ 0.05
VPS35-210ENST00000568784 YY1P25490 414 aa15.37■□□□□ 0.05
VPS35-210ENST00000568784 MXRA7P84157 204 aa15.37■□□□□ 0.05
VPS35-210ENST00000568784 PPP2R5CQ13362 524 aa15.37■□□□□ 0.05
VPS35-210ENST00000568784 BZW1Q7L1Q6 419 aaKnown RBP15.37■□□□□ 0.05
VPS35-210ENST00000568784 APBB1IPQ7Z5R6 666 aaPredicted RBP15.37■□□□□ 0.05
VPS35-210ENST00000568784 CTAGE3PQ8IX95 158 aa15.37■□□□□ 0.05
VPS35-210ENST00000568784 LMNTD2Q8IXW0 634 aa15.37■□□□□ 0.05
VPS35-210ENST00000568784 MKL1Q969V6 931 aa15.37■□□□□ 0.05
VPS35-210ENST00000568784 MXRA8Q9BRK3 442 aa15.37■□□□□ 0.05
VPS35-210ENST00000568784 SYNCQ9H7C4 482 aa15.37■□□□□ 0.05
VPS35-210ENST00000568784 ZWILCHQ9H900 591 aa15.37■□□□□ 0.05
VPS35-210ENST00000568784 MYH11P35749 1972 aa15.37■□□□□ 0.05
VPS35-210ENST00000568784 NAV1Q8NEY1 1877 aa15.36■□□□□ 0.05
VPS35-210ENST00000568784 LRRIQ4A6NIV6 560 aa15.36■□□□□ 0.05
VPS35-210ENST00000568784 CD19P15391 556 aa15.36■□□□□ 0.05
VPS35-210ENST00000568784 FOXN2P32314 431 aa15.36■□□□□ 0.05
VPS35-210ENST00000568784 FASTKD3Q14CZ7 662 aaKnown RBP15.36■□□□□ 0.05
VPS35-210ENST00000568784 PCNX4Q63HM2 1172 aa15.36■□□□□ 0.05
VPS35-210ENST00000568784 SCARA5Q6ZMJ2 495 aa15.36■□□□□ 0.05
VPS35-210ENST00000568784 LMO3Q8TAP4 145 aa15.36■□□□□ 0.05
VPS35-210ENST00000568784 FIZ1Q96SL8 496 aa15.36■□□□□ 0.05
VPS35-210ENST00000568784 FHDC1Q9C0D6 1143 aaPredicted RBP15.36■□□□□ 0.05
VPS35-210ENST00000568784 AAASQ9NRG9 546 aa15.36■□□□□ 0.05
VPS35-210ENST00000568784 METTL5Q9NRN9 209 aaKnown RBP15.36■□□□□ 0.05
VPS35-210ENST00000568784 GINM1Q9NU53 330 aa15.36■□□□□ 0.05
VPS35-210ENST00000568784 SEPT9Q9UHD8 586 aaPredicted RBP15.36■□□□□ 0.05
VPS35-210ENST00000568784 ZFP69BQ9UJL9 534 aa15.36■□□□□ 0.05
VPS35-210ENST00000568784 LAMB1P07942 1786 aa15.36■□□□□ 0.05
VPS35-210ENST00000568784 SLC26A4O43511 780 aa15.36■□□□□ 0.05
VPS35-210ENST00000568784 CRY2Q49AN0 593 aa15.36■□□□□ 0.05
VPS35-210ENST00000568784 SPDYCQ5MJ68 293 aa15.36■□□□□ 0.05
VPS35-210ENST00000568784 PALM2Q8IXS6 379 aa15.36■□□□□ 0.05
VPS35-210ENST00000568784 GMCL1Q96IK5 515 aa15.36■□□□□ 0.05
VPS35-210ENST00000568784 IWS1Q96ST2 819 aa15.36■□□□□ 0.05
VPS35-210ENST00000568784 IQCGQ9H095 443 aaKnown RBP15.36■□□□□ 0.05
VPS35-210ENST00000568784 SAE1Q9UBE0 346 aaPredicted RBP15.36■□□□□ 0.05
VPS35-210ENST00000568784 NOCTQ9UK39 431 aaKnown RBP15.36■□□□□ 0.05
VPS35-210ENST00000568784 MMP10P09238 476 aa15.36■□□□□ 0.05
VPS35-210ENST00000568784 ALDH1B1P30837 517 aa15.36■□□□□ 0.05
VPS35-210ENST00000568784 MAN1A1P33908 653 aa15.36■□□□□ 0.05
VPS35-210ENST00000568784 MTERF2Q49AM1 385 aa15.36■□□□□ 0.05
VPS35-210ENST00000568784 OGFOD1Q8N543 542 aa15.36■□□□□ 0.05
VPS35-210ENST00000568784 MORC4Q8TE76 937 aa15.36■□□□□ 0.05
VPS35-210ENST00000568784 TTC17Q96AE7 1141 aa15.36■□□□□ 0.05
VPS35-210ENST00000568784 ZDHHC15Q96MV8 337 aa15.36■□□□□ 0.05
VPS35-210ENST00000568784 SUGT1Q9Y2Z0 365 aa15.36■□□□□ 0.05
VPS35-210ENST00000568784 CPA2P48052 419 aa15.35■□□□□ 0.05
VPS35-210ENST00000568784 BNIP1Q12981 228 aa15.35■□□□□ 0.05
VPS35-210ENST00000568784 STAT4Q14765 748 aa15.35■□□□□ 0.05
VPS35-210ENST00000568784 SMTNL2Q2TAL5 461 aa15.35■□□□□ 0.05
VPS35-210ENST00000568784 MDH1BQ5I0G3 518 aa15.35■□□□□ 0.05
VPS35-210ENST00000568784 LVRNQ6Q4G3 990 aa15.35■□□□□ 0.05
VPS35-210ENST00000568784 RHOT1Q8IXI2 618 aa15.35■□□□□ 0.05
VPS35-210ENST00000568784 ENTPD5O75356 428 aa15.35■□□□□ 0.05
VPS35-210ENST00000568784 TROVE2P10155 538 aaKnown RBP eCLIP15.35■□□□□ 0.05
VPS35-210ENST00000568784 TAS2R40P59535 323 aa15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms