RNA–Protein interactions for RNA: ENST00000567160.1

CLN3-226, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 616 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-226ENST00000567160 DNM3Q9UQ16 869 aa12.45□□□□□ -0.42
CLN3-226ENST00000567160 DOCK6Q96HP0 2047 aa12.45□□□□□ -0.42
CLN3-226ENST00000567160 COL4A3Q01955 1670 aa12.45□□□□□ -0.42
CLN3-226ENST00000567160 ZFYVE26Q68DK2 2539 aa12.44□□□□□ -0.42
CLN3-226ENST00000567160 MEIS3P2A8K0S8 358 aa12.44□□□□□ -0.42
CLN3-226ENST00000567160 ZMYND10O75800 440 aa12.44□□□□□ -0.42
CLN3-226ENST00000567160 ZNF202O95125 648 aa12.44□□□□□ -0.42
CLN3-226ENST00000567160 LYPLA2O95372 231 aa12.44□□□□□ -0.42
CLN3-226ENST00000567160 HOXB3P14651 431 aaPredicted RBP12.44□□□□□ -0.42
CLN3-226ENST00000567160 YWHABP31946 246 aaKnown RBP12.44□□□□□ -0.42
CLN3-226ENST00000567160 OR1G1P47890 313 aa12.44□□□□□ -0.42
CLN3-226ENST00000567160 CCR3P51677 355 aa12.44□□□□□ -0.42
CLN3-226ENST00000567160 NPEPPSP55786 919 aa12.44□□□□□ -0.42
CLN3-226ENST00000567160 SIM2Q14190 667 aaPredicted RBP12.44□□□□□ -0.42
CLN3-226ENST00000567160 MCM6Q14566 821 aa12.44□□□□□ -0.42
CLN3-226ENST00000567160 E2F4Q16254 413 aa12.44□□□□□ -0.42
CLN3-226ENST00000567160 MTERF2Q49AM1 385 aa12.44□□□□□ -0.42
CLN3-226ENST00000567160 XKR9Q5GH70 373 aa12.44□□□□□ -0.42
CLN3-226ENST00000567160 MAMSTRQ6ZN01 415 aa12.44□□□□□ -0.42
CLN3-226ENST00000567160 ANO5Q75V66 913 aa12.44□□□□□ -0.42
CLN3-226ENST00000567160 CATSPER4Q7RTX7 472 aa12.44□□□□□ -0.42
CLN3-226ENST00000567160 ZNF410Q86VK4 478 aa12.44□□□□□ -0.42
CLN3-226ENST00000567160 GPR65Q8IYL9 337 aa12.44□□□□□ -0.42
CLN3-226ENST00000567160 ENGASEQ8NFI3 743 aa12.44□□□□□ -0.42
CLN3-226ENST00000567160 GPT2Q8TD30 523 aa12.44□□□□□ -0.42
CLN3-226ENST00000567160 RAD54LQ92698 747 aa12.44□□□□□ -0.42
CLN3-226ENST00000567160 COL26A1Q96A83 441 aa12.44□□□□□ -0.42
CLN3-226ENST00000567160 BHMT2Q9H2M3 363 aa12.44□□□□□ -0.42
CLN3-226ENST00000567160 UBN1Q9NPG3 1134 aa12.44□□□□□ -0.42
CLN3-226ENST00000567160 BLOC1S4Q9NUP1 217 aa12.44□□□□□ -0.42
CLN3-226ENST00000567160 FNIP2Q9P278 1114 aa12.44□□□□□ -0.42
CLN3-226ENST00000567160 STK17AQ9UEE5 414 aa12.44□□□□□ -0.42
CLN3-226ENST00000567160 PRG3Q9Y2Y8 225 aaPredicted RBP12.44□□□□□ -0.42
CLN3-226ENST00000567160 PCDHB2Q9Y5E7 798 aa12.44□□□□□ -0.42
CLN3-226ENST00000567160 A0A087WZ62 844 aa12.43□□□□□ -0.42
CLN3-226ENST00000567160 ARHGEF35A5YM69 484 aa12.43□□□□□ -0.42
CLN3-226ENST00000567160 SOBPA7XYQ1 873 aa12.43□□□□□ -0.42
CLN3-226ENST00000567160 GDF9O60383 454 aa12.43□□□□□ -0.42
CLN3-226ENST00000567160 XYLBO75191 536 aa12.43□□□□□ -0.42
CLN3-226ENST00000567160 POMCP01189 267 aa12.43□□□□□ -0.42
CLN3-226ENST00000567160 HNRNPA1P09651 372 aaKnown RBP eCLIP12.43□□□□□ -0.42
CLN3-226ENST00000567160 PLA2G4BP0C869 781 aa12.43□□□□□ -0.42
CLN3-226ENST00000567160 LIMK1P53667 647 aa12.43□□□□□ -0.42
CLN3-226ENST00000567160 NFKBIBQ15653 356 aa12.43□□□□□ -0.42
CLN3-226ENST00000567160 AASDHQ4L235 1098 aaPredicted RBP12.43□□□□□ -0.42
CLN3-226ENST00000567160 LIN9Q5TKA1 542 aa12.43□□□□□ -0.42
CLN3-226ENST00000567160 AGMOQ6ZNB7 445 aa12.43□□□□□ -0.42
CLN3-226ENST00000567160 OTUD6AQ7L8S5 288 aa12.43□□□□□ -0.42
CLN3-226ENST00000567160 TAS1R1Q7RTX1 841 aa12.43□□□□□ -0.42
CLN3-226ENST00000567160 GRASPQ7Z6J2 395 aaPredicted RBP12.43□□□□□ -0.42
CLN3-226ENST00000567160 GRAMD1CQ8IYS0 662 aa12.43□□□□□ -0.42
CLN3-226ENST00000567160 RNF168Q8IYW5 571 aaPredicted RBP12.43□□□□□ -0.42
CLN3-226ENST00000567160 CEP57L1Q8IYX8 460 aa12.43□□□□□ -0.42
CLN3-226ENST00000567160 LARP4BQ92615 738 aaKnown RBP12.43□□□□□ -0.42
CLN3-226ENST00000567160 FGF13Q92913 245 aa12.43□□□□□ -0.42
CLN3-226ENST00000567160 CEP170P1Q96L14 293 aa12.43□□□□□ -0.42
CLN3-226ENST00000567160 FDXACB1Q9BRP7 624 aaPredicted RBP12.43□□□□□ -0.42
CLN3-226ENST00000567160 PYM1Q9BRP8 204 aaKnown RBP12.43□□□□□ -0.42
CLN3-226ENST00000567160 BMP2KQ9NSY1 1161 aaPredicted RBP12.43□□□□□ -0.42
CLN3-226ENST00000567160 ANKEF1Q9NU02 776 aa12.43□□□□□ -0.42
CLN3-226ENST00000567160 MARCH5Q9NX47 278 aa12.43□□□□□ -0.42
CLN3-226ENST00000567160 ZMIZ1Q9ULJ6 1067 aa12.43□□□□□ -0.42
CLN3-226ENST00000567160 FRYQ5TBA9 3013 aa12.42□□□□□ -0.42
CLN3-226ENST00000567160 MAN2B1O00754 1011 aa12.42□□□□□ -0.42
CLN3-226ENST00000567160 ACTN4O43707 911 aaKnown RBP12.42□□□□□ -0.42
CLN3-226ENST00000567160 SLFN14P0C7P3 912 aa12.42□□□□□ -0.42
CLN3-226ENST00000567160 XRCC6P12956 609 aaKnown RBP eCLIP12.42□□□□□ -0.42
CLN3-226ENST00000567160 TDGF1P13385 188 aa12.42□□□□□ -0.42
CLN3-226ENST00000567160 PTMSP20962 102 aa12.42□□□□□ -0.42
CLN3-226ENST00000567160 CNR2P34972 360 aa12.42□□□□□ -0.42
CLN3-226ENST00000567160 AFMP43652 599 aa12.42□□□□□ -0.42
CLN3-226ENST00000567160 RARRES1P49788 294 aa12.42□□□□□ -0.42
CLN3-226ENST00000567160 USP41Q3LFD5 358 aa12.42□□□□□ -0.42
CLN3-226ENST00000567160 LILRA6Q6PI73 481 aa12.42□□□□□ -0.42
CLN3-226ENST00000567160 UNQ6494/PRO21346Q6UXR6 183 aa12.42□□□□□ -0.42
CLN3-226ENST00000567160 KRBA2Q6ZNG9 492 aa12.42□□□□□ -0.42
CLN3-226ENST00000567160 MRPL10Q7Z7H8 261 aaKnown RBP12.42□□□□□ -0.42
CLN3-226ENST00000567160 GPBP1Q86WP2 473 aa12.42□□□□□ -0.42
CLN3-226ENST00000567160 CNNM3Q8NE01 707 aa12.42□□□□□ -0.42
CLN3-226ENST00000567160 KXD1Q9BQD3 176 aa12.42□□□□□ -0.42
CLN3-226ENST00000567160 COLEC11Q9BWP8 271 aa12.42□□□□□ -0.42
CLN3-226ENST00000567160 NIFKQ9BYG3 293 aaKnown RBP12.42□□□□□ -0.42
CLN3-226ENST00000567160 CHRDQ9H2X0 955 aa12.42□□□□□ -0.42
CLN3-226ENST00000567160 CHST7Q9NS84 486 aa12.42□□□□□ -0.42
CLN3-226ENST00000567160 USP25Q9UHP3 1055 aa12.42□□□□□ -0.42
CLN3-226ENST00000567160 TDRD15B5MCY1 1934 aaKnown RBP12.42□□□□□ -0.42
CLN3-226ENST00000567160 GREB1Q4ZG55 1949 aa12.42□□□□□ -0.42
CLN3-226ENST00000567160 F5P12259 2224 aa12.41□□□□□ -0.42
CLN3-226ENST00000567160 USO1O60763 962 aaKnown RBP12.41□□□□□ -0.42
CLN3-226ENST00000567160 MBD3O95983 291 aa12.41□□□□□ -0.42
CLN3-226ENST00000567160 HOXA9P31269 272 aa12.41□□□□□ -0.42
CLN3-226ENST00000567160 SLC12A3P55017 1021 aa12.41□□□□□ -0.42
CLN3-226ENST00000567160 RAD51AP2Q09MP3 1159 aa12.41□□□□□ -0.42
CLN3-226ENST00000567160 TARBP2Q15633 366 aaKnown RBP12.41□□□□□ -0.42
CLN3-226ENST00000567160 PPM1LQ5SGD2 360 aa12.41□□□□□ -0.42
CLN3-226ENST00000567160 PADI6Q6TGC4 694 aa12.41□□□□□ -0.42
CLN3-226ENST00000567160 SV2BQ7L1I2 683 aa12.41□□□□□ -0.42
CLN3-226ENST00000567160 RHPN2Q8IUC4 686 aa12.41□□□□□ -0.42
CLN3-226ENST00000567160 GLYCTKQ8IVS8 523 aa12.41□□□□□ -0.42
CLN3-226ENST00000567160 COLGALT2Q8IYK4 626 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms