RNA–Protein interactions for RNA: ENST00000566057.5

CLN3-221, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 931 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-221ENST00000566057 TUBGCP4Q9UGJ1 667 aa20.04■□□□□ 0.8
CLN3-221ENST00000566057 PPP1R37O75864 691 aa20.03■□□□□ 0.8
CLN3-221ENST00000566057 PAPLNO95428 1278 aa20.03■□□□□ 0.8
CLN3-221ENST00000566057 RPL9P32969 192 aaKnown RBP20.03■□□□□ 0.8
CLN3-221ENST00000566057 ZXDAP98168 799 aa20.03■□□□□ 0.8
CLN3-221ENST00000566057 KCNA1Q09470 495 aa20.03■□□□□ 0.8
CLN3-221ENST00000566057 ZBTB6Q15916 424 aa20.03■□□□□ 0.8
CLN3-221ENST00000566057 E2F4Q16254 413 aa20.03■□□□□ 0.8
CLN3-221ENST00000566057 AXDND1Q5T1B0 1012 aaPredicted RBP20.03■□□□□ 0.8
CLN3-221ENST00000566057 SHC4Q6S5L8 630 aa20.03■□□□□ 0.8
CLN3-221ENST00000566057 ZNF707Q96C28 371 aaPredicted RBP20.03■□□□□ 0.8
CLN3-221ENST00000566057 MSTO1Q9BUK6 570 aa20.03■□□□□ 0.8
CLN3-221ENST00000566057 MRPL44Q9H9J2 332 aaKnown RBP20.03■□□□□ 0.8
CLN3-221ENST00000566057 DPP7Q9UHL4 492 aa20.03■□□□□ 0.8
CLN3-221ENST00000566057 PRR33A8MZF0 331 aa20.02■□□□□ 0.8
CLN3-221ENST00000566057 TRAPPC3O43617 180 aa20.02■□□□□ 0.8
CLN3-221ENST00000566057 CUTAO60888 179 aa20.02■□□□□ 0.8
CLN3-221ENST00000566057 ADRB2P07550 413 aa20.02■□□□□ 0.8
CLN3-221ENST00000566057 GAP43P17677 238 aa20.02■□□□□ 0.8
CLN3-221ENST00000566057 ABCD1P33897 745 aa20.02■□□□□ 0.8
CLN3-221ENST00000566057 OR1D2P34982 312 aa20.02■□□□□ 0.8
CLN3-221ENST00000566057 KYAT1Q16773 422 aa20.02■□□□□ 0.8
CLN3-221ENST00000566057 PDXDC1Q6P996 788 aa20.02■□□□□ 0.8
CLN3-221ENST00000566057 FGFBP2Q9BYJ0 223 aa20.02■□□□□ 0.8
CLN3-221ENST00000566057 MTRRQ9UBK8 725 aa20.02■□□□□ 0.8
CLN3-221ENST00000566057 SEL1LQ9UBV2 794 aa20.02■□□□□ 0.8
CLN3-221ENST00000566057 FBXW11Q9UKB1 542 aa20.02■□□□□ 0.8
CLN3-221ENST00000566057 CPSF3Q9UKF6 684 aaKnown RBP20.02■□□□□ 0.8
CLN3-221ENST00000566057 STYXL1Q9Y6J8 313 aa20.02■□□□□ 0.8
CLN3-221ENST00000566057 SCN1AP35498 2009 aa20.02■□□□□ 0.79
CLN3-221ENST00000566057 NOTCH4Q99466 2003 aa20.02■□□□□ 0.79
CLN3-221ENST00000566057 ZDBF2Q9HCK1 2354 aa20.01■□□□□ 0.79
CLN3-221ENST00000566057 ZNF318Q5VUA4 2279 aa20.01■□□□□ 0.79
CLN3-221ENST00000566057 FRMD3A2A2Y4 597 aa20.01■□□□□ 0.79
CLN3-221ENST00000566057 IDEP14735 1019 aa20.01■□□□□ 0.79
CLN3-221ENST00000566057 ACOT2P49753 483 aa20.01■□□□□ 0.79
CLN3-221ENST00000566057 GUCY2FP51841 1108 aa20.01■□□□□ 0.79
CLN3-221ENST00000566057 CASP5P51878 434 aa20.01■□□□□ 0.79
CLN3-221ENST00000566057 DNM1Q05193 864 aaKnown RBP20.01■□□□□ 0.79
CLN3-221ENST00000566057 PPP2R3AQ06190 1150 aa20.01■□□□□ 0.79
CLN3-221ENST00000566057 RAB33AQ14088 237 aa20.01■□□□□ 0.79
CLN3-221ENST00000566057 PTPN21Q16825 1174 aa20.01■□□□□ 0.79
CLN3-221ENST00000566057 ELMSAN1Q6PJG2 1045 aa20.01■□□□□ 0.79
CLN3-221ENST00000566057 CCDC149Q6ZUS6 474 aa20.01■□□□□ 0.79
CLN3-221ENST00000566057 SMG7Q92540 1137 aaKnown RBP20.01■□□□□ 0.79
CLN3-221ENST00000566057 KIF12Q96FN5 646 aa20.01■□□□□ 0.79
CLN3-221ENST00000566057 RHOBTB2Q9BYZ6 727 aa20.01■□□□□ 0.79
CLN3-221ENST00000566057 RPF1Q9H9Y2 349 aaKnown RBP20.01■□□□□ 0.79
CLN3-221ENST00000566057 PANK4Q9NVE7 773 aa20.01■□□□□ 0.79
CLN3-221ENST00000566057 LIMD1Q9UGP4 676 aa20.01■□□□□ 0.79
CLN3-221ENST00000566057 USTQ9Y2C2 406 aa20.01■□□□□ 0.79
CLN3-221ENST00000566057 CDY1Q9Y6F8 540 aa20.01■□□□□ 0.79
CLN3-221ENST00000566057 ZMYND10O75800 440 aa20■□□□□ 0.79
CLN3-221ENST00000566057 ADSSP30520 456 aa20■□□□□ 0.79
CLN3-221ENST00000566057 VARS2Q5ST30 1063 aaKnown RBP20■□□□□ 0.79
CLN3-221ENST00000566057 ADALQ6DHV7 355 aa20■□□□□ 0.79
CLN3-221ENST00000566057 CYP26C1Q6V0L0 522 aa20■□□□□ 0.79
CLN3-221ENST00000566057 TRIM67Q6ZTA4 783 aa20■□□□□ 0.79
CLN3-221ENST00000566057 ANKS3Q6ZW76 656 aa20■□□□□ 0.79
CLN3-221ENST00000566057 ZDHHC14Q8IZN3 488 aa20■□□□□ 0.79
CLN3-221ENST00000566057 TDRD5Q8NAT2 981 aaKnown RBP20■□□□□ 0.79
CLN3-221ENST00000566057 DHX58Q96C10 678 aa20■□□□□ 0.79
CLN3-221ENST00000566057 FAM212AQ96EL1 285 aa20■□□□□ 0.79
CLN3-221ENST00000566057 PRKD2Q9BZL6 878 aa20■□□□□ 0.79
CLN3-221ENST00000566057 WDR6Q9NNW5 1121 aaKnown RBP20■□□□□ 0.79
CLN3-221ENST00000566057 OLFML3Q9NRN5 406 aa20■□□□□ 0.79
CLN3-221ENST00000566057 KBTBD4Q9NVX7 518 aa20■□□□□ 0.79
CLN3-221ENST00000566057 ZDHHC7Q9NXF8 308 aa20■□□□□ 0.79
CLN3-221ENST00000566057 PCDHA7Q9UN72 937 aa20■□□□□ 0.79
CLN3-221ENST00000566057 NUB1Q9Y5A7 615 aa20■□□□□ 0.79
CLN3-221ENST00000566057 BACE2Q9Y5Z0 518 aa20■□□□□ 0.79
CLN3-221ENST00000566057 WDFY4Q6ZS81 3184 aa20■□□□□ 0.79
CLN3-221ENST00000566057 N4BP1O75113 896 aaKnown RBP19.99■□□□□ 0.79
CLN3-221ENST00000566057 GCNT3O95395 438 aa19.99■□□□□ 0.79
CLN3-221ENST00000566057 ASGR2P07307 311 aa19.99■□□□□ 0.79
CLN3-221ENST00000566057 LRPAP1P30533 357 aa19.99■□□□□ 0.79
CLN3-221ENST00000566057 L1TD1Q5T7N2 865 aaKnown RBP19.99■□□□□ 0.79
CLN3-221ENST00000566057 JADE1Q6IE81 842 aa19.99■□□□□ 0.79
CLN3-221ENST00000566057 SLFN12LQ6IEE8 588 aa19.99■□□□□ 0.79
CLN3-221ENST00000566057 CRELD2Q6UXH1 353 aaPredicted RBP19.99■□□□□ 0.79
CLN3-221ENST00000566057 HFE2Q6ZVN8 426 aa19.99■□□□□ 0.79
CLN3-221ENST00000566057 KCNG4Q8TDN1 519 aa19.99■□□□□ 0.79
CLN3-221ENST00000566057 HVCN1Q96D96 273 aa19.99■□□□□ 0.79
CLN3-221ENST00000566057 SUSD3Q96L08 255 aa19.99■□□□□ 0.79
CLN3-221ENST00000566057 TNMDQ9H2S6 317 aa19.99■□□□□ 0.79
CLN3-221ENST00000566057 AGO2Q9UKV8 859 aaKnown RBP19.99■□□□□ 0.79
CLN3-221ENST00000566057 UBQLN1Q9UMX0 589 aaKnown RBP19.99■□□□□ 0.79
CLN3-221ENST00000566057 ZDHHC9Q9Y397 364 aa19.99■□□□□ 0.79
CLN3-221ENST00000566057 MUC6Q6W4X9 2439 aa19.99■□□□□ 0.79
CLN3-221ENST00000566057 SYN3O14994 580 aa19.98■□□□□ 0.79
CLN3-221ENST00000566057 TBC1D4O60343 1298 aa19.98■□□□□ 0.79
CLN3-221ENST00000566057 CYP3A5P20815 502 aa19.98■□□□□ 0.79
CLN3-221ENST00000566057 MCM4P33991 863 aa19.98■□□□□ 0.79
CLN3-221ENST00000566057 ME1P48163 572 aa19.98■□□□□ 0.79
CLN3-221ENST00000566057 MRPL58Q14197 206 aaKnown RBP19.98■□□□□ 0.79
CLN3-221ENST00000566057 ATL3Q6DD88 541 aa19.98■□□□□ 0.79
CLN3-221ENST00000566057 OTOP3Q7RTS5 596 aa19.98■□□□□ 0.79
CLN3-221ENST00000566057 PLCD3Q8N3E9 789 aa19.98■□□□□ 0.79
CLN3-221ENST00000566057 ZSWIM2Q8NEG5 633 aa19.98■□□□□ 0.79
CLN3-221ENST00000566057 HPS3Q969F9 1004 aa19.98■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms