RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 CDY1Q9Y6F8 540 aa22.6■■□□□ 1.21
CLN3-219ENST00000565778 PLXNA3P51805 1871 aa22.6■■□□□ 1.21
CLN3-219ENST00000565778 CLUHO75153 1309 aa22.59■■□□□ 1.21
CLN3-219ENST00000565778 TRIOO75962 3097 aa22.59■■□□□ 1.21
CLN3-219ENST00000565778 TTC26A0AVF1 554 aa22.59■■□□□ 1.21
CLN3-219ENST00000565778 LACTBL1A8MY62 500 aa22.59■■□□□ 1.21
CLN3-219ENST00000565778 OGTO15294 1046 aa22.59■■□□□ 1.21
CLN3-219ENST00000565778 PLA2G5P39877 138 aa22.59■■□□□ 1.21
CLN3-219ENST00000565778 PPP2R3AQ06190 1150 aa22.59■■□□□ 1.21
CLN3-219ENST00000565778 AXDND1Q5T1B0 1012 aaPredicted RBP22.59■■□□□ 1.21
CLN3-219ENST00000565778 FOXD4L5Q5VV16 416 aaPredicted RBP22.59■■□□□ 1.21
CLN3-219ENST00000565778 RSPO2Q6UXX9 243 aaPredicted RBP22.59■■□□□ 1.21
CLN3-219ENST00000565778 FOXD4L4Q8WXT5 416 aaPredicted RBP22.59■■□□□ 1.21
CLN3-219ENST00000565778 FAM212AQ96EL1 285 aa22.59■■□□□ 1.21
CLN3-219ENST00000565778 FIZ1Q96SL8 496 aa22.59■■□□□ 1.21
CLN3-219ENST00000565778 MSTO1Q9BUK6 570 aa22.59■■□□□ 1.21
CLN3-219ENST00000565778 POLIQ9UNA4 740 aa22.59■■□□□ 1.21
CLN3-219ENST00000565778 A0A0B4J269 797 aa22.58■■□□□ 1.21
CLN3-219ENST00000565778 MYMKA6NI61 221 aa22.58■■□□□ 1.21
CLN3-219ENST00000565778 PAPLNO95428 1278 aa22.58■■□□□ 1.21
CLN3-219ENST00000565778 C8AP07357 584 aa22.58■■□□□ 1.21
CLN3-219ENST00000565778 HNRNPA1P09651 372 aaKnown RBP eCLIP22.58■■□□□ 1.21
CLN3-219ENST00000565778 MCM4P33991 863 aa22.58■■□□□ 1.21
CLN3-219ENST00000565778 STAT6P42226 847 aa22.58■■□□□ 1.21
CLN3-219ENST00000565778 NASPP49321 788 aaPredicted RBP22.58■■□□□ 1.21
CLN3-219ENST00000565778 ZNF720Q7Z2F6 126 aa22.58■■□□□ 1.21
CLN3-219ENST00000565778 FBXL6Q8N531 539 aa22.58■■□□□ 1.21
CLN3-219ENST00000565778 SMOC2Q9H3U7 446 aa22.58■■□□□ 1.21
CLN3-219ENST00000565778 KCNK12Q9HB15 430 aa22.58■■□□□ 1.21
CLN3-219ENST00000565778 TUBGCP4Q9UGJ1 667 aa22.58■■□□□ 1.21
CLN3-219ENST00000565778 MORC2Q9Y6X9 1032 aaPredicted RBP22.58■■□□□ 1.21
CLN3-219ENST00000565778 TRIP11Q15643 1979 aa22.58■■□□□ 1.2
CLN3-219ENST00000565778 ANKRD63C9JTQ0 380 aa22.57■■□□□ 1.2
CLN3-219ENST00000565778 H7C4K7 107 aa22.57■■□□□ 1.2
CLN3-219ENST00000565778 N4BP1O75113 896 aaKnown RBP22.57■■□□□ 1.2
CLN3-219ENST00000565778 ARPP19P56211 112 aa22.57■■□□□ 1.2
CLN3-219ENST00000565778 UVSSAQ2YD98 709 aa22.57■■□□□ 1.2
CLN3-219ENST00000565778 VARS2Q5ST30 1063 aaKnown RBP22.57■■□□□ 1.2
CLN3-219ENST00000565778 ZBTB41Q5SVQ8 909 aa22.57■■□□□ 1.2
CLN3-219ENST00000565778 GRASPQ7Z6J2 395 aaPredicted RBP22.57■■□□□ 1.2
CLN3-219ENST00000565778 SFR1Q86XK3 245 aa22.57■■□□□ 1.2
CLN3-219ENST00000565778 MAP4K3Q8IVH8 894 aa22.57■■□□□ 1.2
CLN3-219ENST00000565778 LINC00301Q8NCQ3 95 aa22.57■■□□□ 1.2
CLN3-219ENST00000565778 SLC7A14Q8TBB6 771 aa22.57■■□□□ 1.2
CLN3-219ENST00000565778 MRPL44Q9H9J2 332 aaKnown RBP22.57■■□□□ 1.2
CLN3-219ENST00000565778 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP22.57■■□□□ 1.2
CLN3-219ENST00000565778 TECTAO75443 2155 aa22.57■■□□□ 1.2
CLN3-219ENST00000565778 SYN3O14994 580 aa22.56■■□□□ 1.2
CLN3-219ENST00000565778 SPTLC2O15270 562 aa22.56■■□□□ 1.2
CLN3-219ENST00000565778 CCL16O15467 120 aa22.56■■□□□ 1.2
CLN3-219ENST00000565778 XPOTO43592 962 aaKnown RBP22.56■■□□□ 1.2
CLN3-219ENST00000565778 XYLBO75191 536 aa22.56■■□□□ 1.2
CLN3-219ENST00000565778 PDIA4P13667 645 aaKnown RBP22.56■■□□□ 1.2
CLN3-219ENST00000565778 IDEP14735 1019 aa22.56■■□□□ 1.2
CLN3-219ENST00000565778 TDGQ13569 410 aa22.56■■□□□ 1.2
CLN3-219ENST00000565778 ZBTB6Q15916 424 aa22.56■■□□□ 1.2
CLN3-219ENST00000565778 ENOX2Q16206 610 aaKnown RBP22.56■■□□□ 1.2
CLN3-219ENST00000565778 ADALQ6DHV7 355 aa22.56■■□□□ 1.2
CLN3-219ENST00000565778 SLFN12LQ6IEE8 588 aa22.56■■□□□ 1.2
CLN3-219ENST00000565778 SLC39A4Q6P5W5 647 aa22.56■■□□□ 1.2
CLN3-219ENST00000565778 PDILTQ8N807 584 aa22.56■■□□□ 1.2
CLN3-219ENST00000565778 SUSD3Q96L08 255 aa22.56■■□□□ 1.2
CLN3-219ENST00000565778 MYADMQ96S97 322 aa22.56■■□□□ 1.2
CLN3-219ENST00000565778 KCNH6Q9H252 994 aa22.56■■□□□ 1.2
CLN3-219ENST00000565778 ST6GALNAC4Q9H4F1 302 aa22.56■■□□□ 1.2
CLN3-219ENST00000565778 TBC1D7Q9P0N9 293 aa22.56■■□□□ 1.2
CLN3-219ENST00000565778 IGSF9Q9P2J2 1179 aa22.56■■□□□ 1.2
CLN3-219ENST00000565778 SEL1LQ9UBV2 794 aa22.56■■□□□ 1.2
CLN3-219ENST00000565778 UBQLN1Q9UMX0 589 aaKnown RBP22.56■■□□□ 1.2
CLN3-219ENST00000565778 MYO10Q9HD67 2058 aa22.55■■□□□ 1.2
CLN3-219ENST00000565778 GAP43P17677 238 aa22.55■■□□□ 1.2
CLN3-219ENST00000565778 HOXA9P31269 272 aa22.55■■□□□ 1.2
CLN3-219ENST00000565778 ELF1P32519 619 aa22.55■■□□□ 1.2
CLN3-219ENST00000565778 GET4Q7L5D6 327 aaPredicted RBP22.55■■□□□ 1.2
CLN3-219ENST00000565778 CD302Q8IX05 232 aa22.55■■□□□ 1.2
CLN3-219ENST00000565778 TMEM130Q8N3G9 435 aa22.55■■□□□ 1.2
CLN3-219ENST00000565778 SPRYD3Q8NCJ5 442 aa22.55■■□□□ 1.2
CLN3-219ENST00000565778 APPL2Q8NEU8 664 aa22.55■■□□□ 1.2
CLN3-219ENST00000565778 ZNF461Q8TAF7 563 aa22.55■■□□□ 1.2
CLN3-219ENST00000565778 DNAJC19Q96DA6 116 aa22.55■■□□□ 1.2
CLN3-219ENST00000565778 TSPAN18Q96SJ8 248 aa22.55■■□□□ 1.2
CLN3-219ENST00000565778 CPSF3Q9UKF6 684 aaKnown RBP22.55■■□□□ 1.2
CLN3-219ENST00000565778 GTF3C5Q9Y5Q8 519 aaPredicted RBP22.55■■□□□ 1.2
CLN3-219ENST00000565778 A0A087X0B3 334 aa22.54■■□□□ 1.2
CLN3-219ENST00000565778 FAM189A1O60320 539 aa22.54■■□□□ 1.2
CLN3-219ENST00000565778 PPP6R2O75170 966 aa22.54■■□□□ 1.2
CLN3-219ENST00000565778 PDGFBP01127 241 aaPredicted RBP22.54■■□□□ 1.2
CLN3-219ENST00000565778 CYP3A5P20815 502 aa22.54■■□□□ 1.2
CLN3-219ENST00000565778 FSHRP23945 695 aa22.54■■□□□ 1.2
CLN3-219ENST00000565778 LRPAP1P30533 357 aa22.54■■□□□ 1.2
CLN3-219ENST00000565778 ACOT2P49753 483 aa22.54■■□□□ 1.2
CLN3-219ENST00000565778 NTHL1P78549 312 aa22.54■■□□□ 1.2
CLN3-219ENST00000565778 MRPL58Q14197 206 aaKnown RBP22.54■■□□□ 1.2
CLN3-219ENST00000565778 FOXD4L6Q3SYB3 417 aaPredicted RBP22.54■■□□□ 1.2
CLN3-219ENST00000565778 CTXN3Q4LDR2 81 aa22.54■■□□□ 1.2
CLN3-219ENST00000565778 SLC8B1Q6J4K2 584 aa22.54■■□□□ 1.2
CLN3-219ENST00000565778 FOXD4L3Q6VB84 417 aaPredicted RBP22.54■■□□□ 1.2
CLN3-219ENST00000565778 RTL10Q7L3V2 364 aa22.54■■□□□ 1.2
CLN3-219ENST00000565778 RSAD2Q8WXG1 361 aa22.54■■□□□ 1.2
CLN3-219ENST00000565778 EPS15L1Q9UBC2 864 aa22.54■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms