RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 TCF15Q12870 199 aa11.82□□□□□ -0.52
VPS39-208ENST00000564994 TDGQ13569 410 aa11.82□□□□□ -0.52
VPS39-208ENST00000564994 VARS2Q5ST30 1063 aaKnown RBP11.82□□□□□ -0.52
VPS39-208ENST00000564994 LIN9Q5TKA1 542 aa11.82□□□□□ -0.52
VPS39-208ENST00000564994 SLC39A4Q6P5W5 647 aa11.82□□□□□ -0.52
VPS39-208ENST00000564994 PDXDC1Q6P996 788 aa11.82□□□□□ -0.52
VPS39-208ENST00000564994 GET4Q7L5D6 327 aaPredicted RBP11.82□□□□□ -0.52
VPS39-208ENST00000564994 GRASPQ7Z6J2 395 aaPredicted RBP11.82□□□□□ -0.52
VPS39-208ENST00000564994 RASSF8Q8NHQ8 419 aa11.82□□□□□ -0.52
VPS39-208ENST00000564994 SLC7A14Q8TBB6 771 aa11.82□□□□□ -0.52
VPS39-208ENST00000564994 LARP4BQ92615 738 aaKnown RBP11.82□□□□□ -0.52
VPS39-208ENST00000564994 STAMQ92783 540 aa11.82□□□□□ -0.52
VPS39-208ENST00000564994 BICD1Q96G01 975 aa11.82□□□□□ -0.52
VPS39-208ENST00000564994 CLIC6Q96NY7 704 aa11.82□□□□□ -0.52
VPS39-208ENST00000564994 PARVGQ9HBI0 331 aa11.82□□□□□ -0.52
VPS39-208ENST00000564994 EPS15L1Q9UBC2 864 aa11.82□□□□□ -0.52
VPS39-208ENST00000564994 SRPRBQ9Y5M8 271 aaKnown RBP11.82□□□□□ -0.52
VPS39-208ENST00000564994 SCN1AP35498 2009 aa11.81□□□□□ -0.52
VPS39-208ENST00000564994 TTC26A0AVF1 554 aa11.81□□□□□ -0.52
VPS39-208ENST00000564994 K7ELQ4 463 aaPredicted RBP11.81□□□□□ -0.52
VPS39-208ENST00000564994 HNRNPDLO14979 420 aaKnown RBP11.81□□□□□ -0.52
VPS39-208ENST00000564994 CCL16O15467 120 aa11.81□□□□□ -0.52
VPS39-208ENST00000564994 NARSO43776 548 aaKnown RBP11.81□□□□□ -0.52
VPS39-208ENST00000564994 TBC1D4O60343 1298 aa11.81□□□□□ -0.52
VPS39-208ENST00000564994 KRT18P05783 430 aaKnown RBP11.81□□□□□ -0.52
VPS39-208ENST00000564994 HNRNPA1P09651 372 aaKnown RBP eCLIP11.81□□□□□ -0.52
VPS39-208ENST00000564994 NMT1P30419 496 aaKnown RBP11.81□□□□□ -0.52
VPS39-208ENST00000564994 HOXA9P31269 272 aa11.81□□□□□ -0.52
VPS39-208ENST00000564994 RPL9P32969 192 aaKnown RBP11.81□□□□□ -0.52
VPS39-208ENST00000564994 DDIT3P35638 169 aa11.81□□□□□ -0.52
VPS39-208ENST00000564994 MATR3P43243 847 aaKnown RBP eCLIP11.81□□□□□ -0.52
VPS39-208ENST00000564994 LIG4P49917 911 aa11.81□□□□□ -0.52
VPS39-208ENST00000564994 MRPL58Q14197 206 aaKnown RBP11.81□□□□□ -0.52
VPS39-208ENST00000564994 ZBTB6Q15916 424 aa11.81□□□□□ -0.52
VPS39-208ENST00000564994 PPM1LQ5SGD2 360 aa11.81□□□□□ -0.52
VPS39-208ENST00000564994 AXDND1Q5T1B0 1012 aaPredicted RBP11.81□□□□□ -0.52
VPS39-208ENST00000564994 SLC8B1Q6J4K2 584 aa11.81□□□□□ -0.52
VPS39-208ENST00000564994 ANKS3Q6ZW76 656 aa11.81□□□□□ -0.52
VPS39-208ENST00000564994 ST13P5Q8NFI4 369 aaPredicted RBP11.81□□□□□ -0.52
VPS39-208ENST00000564994 USP28Q96RU2 1077 aa11.81□□□□□ -0.52
VPS39-208ENST00000564994 IKZF4Q9H2S9 585 aa11.81□□□□□ -0.52
VPS39-208ENST00000564994 ZHX3Q9H4I2 956 aa11.81□□□□□ -0.52
VPS39-208ENST00000564994 PLEKHA5Q9HAU0 1116 aa11.81□□□□□ -0.52
VPS39-208ENST00000564994 IGSF9Q9P2J2 1179 aa11.81□□□□□ -0.52
VPS39-208ENST00000564994 DUSP12Q9UNI6 340 aa11.81□□□□□ -0.52
VPS39-208ENST00000564994 A0A0B4J269 797 aa11.8□□□□□ -0.52
VPS39-208ENST00000564994 WDR27A2RRH5 827 aa11.8□□□□□ -0.52
VPS39-208ENST00000564994 TISP43B9A030 160 aa11.8□□□□□ -0.52
VPS39-208ENST00000564994 ANKRD63C9JTQ0 380 aa11.8□□□□□ -0.52
VPS39-208ENST00000564994 SYN3O14994 580 aa11.8□□□□□ -0.52
VPS39-208ENST00000564994 CLTAP09496 248 aa11.8□□□□□ -0.52
VPS39-208ENST00000564994 LAMP2P13473 410 aa11.8□□□□□ -0.52
VPS39-208ENST00000564994 FSHRP23945 695 aa11.8□□□□□ -0.52
VPS39-208ENST00000564994 GUCY2FP51841 1108 aa11.8□□□□□ -0.52
VPS39-208ENST00000564994 GTF2BQ00403 316 aa11.8□□□□□ -0.52
VPS39-208ENST00000564994 ROR1Q01973 937 aa11.8□□□□□ -0.52
VPS39-208ENST00000564994 ENOX2Q16206 610 aaKnown RBP11.8□□□□□ -0.52
VPS39-208ENST00000564994 ZC2HC1CQ53FD0 456 aaPredicted RBP11.8□□□□□ -0.52
VPS39-208ENST00000564994 DYMQ7RTS9 669 aa11.8□□□□□ -0.52
VPS39-208ENST00000564994 MAP4K3Q8IVH8 894 aa11.8□□□□□ -0.52
VPS39-208ENST00000564994 SLC44A3Q8N4M1 653 aa11.8□□□□□ -0.52
VPS39-208ENST00000564994 TMEM105Q8N8V8 129 aa11.8□□□□□ -0.52
VPS39-208ENST00000564994 SUSD3Q96L08 255 aa11.8□□□□□ -0.52
VPS39-208ENST00000564994 PHOX2BQ99453 314 aa11.8□□□□□ -0.52
VPS39-208ENST00000564994 HCFC1R1Q9NWW0 138 aa11.8□□□□□ -0.52
VPS39-208ENST00000564994 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.8□□□□□ -0.52
VPS39-208ENST00000564994 NUB1Q9Y5A7 615 aa11.8□□□□□ -0.52
VPS39-208ENST00000564994 TSC2P49815 1807 aa11.79□□□□□ -0.52
VPS39-208ENST00000564994 VPS13AQ96RL7 3174 aa11.79□□□□□ -0.52
VPS39-208ENST00000564994 A0A087X0B3 334 aa11.79□□□□□ -0.52
VPS39-208ENST00000564994 MYMKA6NI61 221 aa11.79□□□□□ -0.52
VPS39-208ENST00000564994 LACTBL1A8MY62 500 aa11.79□□□□□ -0.52
VPS39-208ENST00000564994 ANHXE9PGG2 379 aa11.79□□□□□ -0.52
VPS39-208ENST00000564994 OGTO15294 1046 aa11.79□□□□□ -0.52
VPS39-208ENST00000564994 STX6O43752 255 aa11.79□□□□□ -0.52
VPS39-208ENST00000564994 TBCAO75347 108 aaKnown RBP11.79□□□□□ -0.52
VPS39-208ENST00000564994 ABLIM3O94929 683 aa11.79□□□□□ -0.52
VPS39-208ENST00000564994 ADRB2P07550 413 aa11.79□□□□□ -0.52
VPS39-208ENST00000564994 POU2F2P09086 479 aa11.79□□□□□ -0.52
VPS39-208ENST00000564994 NPR3P17342 541 aa11.79□□□□□ -0.52
VPS39-208ENST00000564994 SCP2P22307 547 aa11.79□□□□□ -0.52
VPS39-208ENST00000564994 LRPAP1P30533 357 aa11.79□□□□□ -0.52
VPS39-208ENST00000564994 MCM4P33991 863 aa11.79□□□□□ -0.52
VPS39-208ENST00000564994 HTR4Q13639 388 aa11.79□□□□□ -0.52
VPS39-208ENST00000564994 SLC39A14Q15043 492 aa11.79□□□□□ -0.52
VPS39-208ENST00000564994 UVSSAQ2YD98 709 aa11.79□□□□□ -0.52
VPS39-208ENST00000564994 CWF19L1Q69YN2 538 aaKnown RBP11.79□□□□□ -0.52
VPS39-208ENST00000564994 ALYREFQ86V81 257 aaKnown RBP11.79□□□□□ -0.52
VPS39-208ENST00000564994 SFR1Q86XK3 245 aa11.79□□□□□ -0.52
VPS39-208ENST00000564994 ZNF461Q8TAF7 563 aa11.79□□□□□ -0.52
VPS39-208ENST00000564994 ITFG1Q8TB96 612 aa11.79□□□□□ -0.52
VPS39-208ENST00000564994 DDX12PQ92771 950 aa11.79□□□□□ -0.52
VPS39-208ENST00000564994 DNAJC19Q96DA6 116 aa11.79□□□□□ -0.52
VPS39-208ENST00000564994 KIF12Q96FN5 646 aa11.79□□□□□ -0.52
VPS39-208ENST00000564994 RPP25Q9BUL9 199 aaKnown RBP11.79□□□□□ -0.52
VPS39-208ENST00000564994 ST6GALNAC4Q9H4F1 302 aa11.79□□□□□ -0.52
VPS39-208ENST00000564994 DNMT3BQ9UBC3 853 aaKnown RBP11.79□□□□□ -0.52
VPS39-208ENST00000564994 STK17AQ9UEE5 414 aa11.79□□□□□ -0.52
VPS39-208ENST00000564994 CCDC39Q9UFE4 941 aa11.79□□□□□ -0.52
VPS39-208ENST00000564994 FBXL5Q9UKA1 691 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms