RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 THP07101 528 aa17.92■□□□□ 0.46
VPS4A-202ENST00000562754 TPM2P07951 284 aa17.92■□□□□ 0.46
VPS4A-202ENST00000562754 AP3M2P53677 418 aa17.92■□□□□ 0.46
VPS4A-202ENST00000562754 UBASH3AP57075 661 aa17.92■□□□□ 0.46
VPS4A-202ENST00000562754 PLCB2Q00722 1185 aa17.92■□□□□ 0.46
VPS4A-202ENST00000562754 PTPN21Q16825 1174 aa17.92■□□□□ 0.46
VPS4A-202ENST00000562754 KRT39Q6A163 491 aa17.92■□□□□ 0.46
VPS4A-202ENST00000562754 TRAPPC11Q7Z392 1133 aa17.92■□□□□ 0.46
VPS4A-202ENST00000562754 ABI1Q8IZP0 508 aa17.92■□□□□ 0.46
VPS4A-202ENST00000562754 BEST2Q8NFU1 509 aa17.92■□□□□ 0.46
VPS4A-202ENST00000562754 URGCPQ8TCY9 931 aa17.92■□□□□ 0.46
VPS4A-202ENST00000562754 TAS1R2Q8TE23 839 aa17.92■□□□□ 0.46
VPS4A-202ENST00000562754 ZNF689Q96CS4 500 aaPredicted RBP17.92■□□□□ 0.46
VPS4A-202ENST00000562754 DPP3Q9NY33 737 aa17.92■□□□□ 0.46
VPS4A-202ENST00000562754 CACNG4Q9UBN1 327 aa17.92■□□□□ 0.46
VPS4A-202ENST00000562754 SLC4A7Q9Y6M7 1214 aa17.92■□□□□ 0.46
VPS4A-202ENST00000562754 KIAA1671Q9BY89 1806 aa17.92■□□□□ 0.46
VPS4A-202ENST00000562754 SCN1AP35498 2009 aa17.92■□□□□ 0.46
VPS4A-202ENST00000562754 PPEF2O14830 753 aa17.91■□□□□ 0.46
VPS4A-202ENST00000562754 PMM2O15305 246 aa17.91■□□□□ 0.46
VPS4A-202ENST00000562754 N4BP1O75113 896 aaKnown RBP17.91■□□□□ 0.46
VPS4A-202ENST00000562754 LRRN2O75325 713 aa17.91■□□□□ 0.46
VPS4A-202ENST00000562754 HLA-DRAP01903 254 aa17.91■□□□□ 0.46
VPS4A-202ENST00000562754 CYP3A5P20815 502 aa17.91■□□□□ 0.46
VPS4A-202ENST00000562754 DSC1Q08554 894 aa17.91■□□□□ 0.46
VPS4A-202ENST00000562754 BIRC3Q13489 604 aa17.91■□□□□ 0.46
VPS4A-202ENST00000562754 NR1I3Q14994 352 aa17.91■□□□□ 0.46
VPS4A-202ENST00000562754 SHHQ15465 462 aa17.91■□□□□ 0.46
VPS4A-202ENST00000562754 PAN2Q504Q3 1202 aaKnown RBP17.91■□□□□ 0.46
VPS4A-202ENST00000562754 EPC2Q52LR7 807 aa17.91■□□□□ 0.46
VPS4A-202ENST00000562754 ZNF280BQ86YH2 543 aa17.91■□□□□ 0.46
VPS4A-202ENST00000562754 CACTINQ8WUQ7 758 aaKnown RBP17.91■□□□□ 0.46
VPS4A-202ENST00000562754 SEMA4DQ92854 862 aa17.91■□□□□ 0.46
VPS4A-202ENST00000562754 SLC9A7Q96T83 725 aa17.91■□□□□ 0.46
VPS4A-202ENST00000562754 MTIF3Q9H2K0 278 aaKnown RBP17.91■□□□□ 0.46
VPS4A-202ENST00000562754 SLC38A7Q9NVC3 462 aa17.91■□□□□ 0.46
VPS4A-202ENST00000562754 COQ4Q9Y3A0 265 aa17.91■□□□□ 0.46
VPS4A-202ENST00000562754 GBF1Q92538 1859 aa17.9■□□□□ 0.46
VPS4A-202ENST00000562754 P4HA2O15460 535 aa17.9■□□□□ 0.46
VPS4A-202ENST00000562754 XPOTO43592 962 aaKnown RBP17.9■□□□□ 0.46
VPS4A-202ENST00000562754 DDHD2O94830 711 aa17.9■□□□□ 0.46
VPS4A-202ENST00000562754 GJB5O95377 273 aa17.9■□□□□ 0.46
VPS4A-202ENST00000562754 ITGB3P05106 788 aa17.9■□□□□ 0.46
VPS4A-202ENST00000562754 POLR2BP30876 1174 aaKnown RBP17.9■□□□□ 0.46
VPS4A-202ENST00000562754 UBXN1Q04323 297 aa17.9■□□□□ 0.46
VPS4A-202ENST00000562754 FILIP1LQ4L180 1135 aa17.9■□□□□ 0.46
VPS4A-202ENST00000562754 FKBP15Q5T1M5 1219 aa17.9■□□□□ 0.46
VPS4A-202ENST00000562754 HERC6Q8IVU3 1022 aa17.9■□□□□ 0.46
VPS4A-202ENST00000562754 LMO3Q8TAP4 145 aa17.9■□□□□ 0.46
VPS4A-202ENST00000562754 RNPC3Q96LT9 517 aaKnown RBP17.9■□□□□ 0.46
VPS4A-202ENST00000562754 CRACR2AQ9BSW2 395 aa17.9■□□□□ 0.46
VPS4A-202ENST00000562754 MRPL9Q9BYD2 267 aaKnown RBP17.9■□□□□ 0.46
VPS4A-202ENST00000562754 UBE2OQ9C0C9 1292 aaKnown RBP17.9■□□□□ 0.46
VPS4A-202ENST00000562754 ITGA11Q9UKX5 1188 aa17.9■□□□□ 0.46
VPS4A-202ENST00000562754 ANO9A1A5B4 782 aa17.89■□□□□ 0.45
VPS4A-202ENST00000562754 GTPBP10A4D1E9 387 aaKnown RBP17.89■□□□□ 0.45
VPS4A-202ENST00000562754 CASTOR2A6NHX0 329 aa17.89■□□□□ 0.45
VPS4A-202ENST00000562754 CST3P01034 146 aaPredicted RBP17.89■□□□□ 0.45
VPS4A-202ENST00000562754 ATP2A2P16615 1042 aaKnown RBP17.89■□□□□ 0.45
VPS4A-202ENST00000562754 LRPAP1P30533 357 aa17.89■□□□□ 0.45
VPS4A-202ENST00000562754 PBX1P40424 430 aa17.89■□□□□ 0.45
VPS4A-202ENST00000562754 PIK3CAP42336 1068 aa17.89■□□□□ 0.45
VPS4A-202ENST00000562754 KLK7P49862 253 aa17.89■□□□□ 0.45
VPS4A-202ENST00000562754 ZNF75DP51815 510 aa17.89■□□□□ 0.45
VPS4A-202ENST00000562754 HTRA4P83105 476 aaPredicted RBP17.89■□□□□ 0.45
VPS4A-202ENST00000562754 KCNMA1Q12791 1236 aa17.89■□□□□ 0.45
VPS4A-202ENST00000562754 TUSC3Q13454 348 aa17.89■□□□□ 0.45
VPS4A-202ENST00000562754 NCOA4Q13772 614 aa17.89■□□□□ 0.45
VPS4A-202ENST00000562754 C9orf57Q5W0N0 161 aa17.89■□□□□ 0.45
VPS4A-202ENST00000562754 COLGALT2Q8IYK4 626 aa17.89■□□□□ 0.45
VPS4A-202ENST00000562754 CMTR2Q8IYT2 770 aaKnown RBP17.89■□□□□ 0.45
VPS4A-202ENST00000562754 LRRC43Q8N309 656 aa17.89■□□□□ 0.45
VPS4A-202ENST00000562754 FBXL13Q8NEE6 735 aa17.89■□□□□ 0.45
VPS4A-202ENST00000562754 PHOSPHO2Q8TCD6 241 aa17.89■□□□□ 0.45
VPS4A-202ENST00000562754 RSPH1Q8WYR4 309 aa17.89■□□□□ 0.45
VPS4A-202ENST00000562754 ELMO3Q96BJ8 720 aa17.89■□□□□ 0.45
VPS4A-202ENST00000562754 ERGIC2Q96RQ1 377 aa17.89■□□□□ 0.45
VPS4A-202ENST00000562754 PAAF1Q9BRP4 392 aa17.89■□□□□ 0.45
VPS4A-202ENST00000562754 TRIM5Q9C035 493 aa17.89■□□□□ 0.45
VPS4A-202ENST00000562754 INTS2Q9H0H0 1204 aaKnown RBP17.89■□□□□ 0.45
VPS4A-202ENST00000562754 NRDE2Q9H7Z3 1164 aa17.89■□□□□ 0.45
VPS4A-202ENST00000562754 GCNT4Q9P109 453 aa17.89■□□□□ 0.45
VPS4A-202ENST00000562754 KANSL3Q9P2N6 904 aa17.89■□□□□ 0.45
VPS4A-202ENST00000562754 DNAJB4Q9UDY4 337 aa17.89■□□□□ 0.45
VPS4A-202ENST00000562754 SIK3Q9Y2K2 1263 aa17.89■□□□□ 0.45
VPS4A-202ENST00000562754 CBFA2T2O43439 604 aa17.88■□□□□ 0.45
VPS4A-202ENST00000562754 PHACTR2O75167 634 aa17.88■□□□□ 0.45
VPS4A-202ENST00000562754 KRT19P08727 400 aa17.88■□□□□ 0.45
VPS4A-202ENST00000562754 IGFBP6P24592 240 aaPredicted RBP17.88■□□□□ 0.45
VPS4A-202ENST00000562754 MYL6P60660 151 aa17.88■□□□□ 0.45
VPS4A-202ENST00000562754 RNASELQ05823 741 aaKnown RBP17.88■□□□□ 0.45
VPS4A-202ENST00000562754 SYCP1Q15431 976 aa17.88■□□□□ 0.45
VPS4A-202ENST00000562754 FAM109BQ6ICB4 259 aaPredicted RBP17.88■□□□□ 0.45
VPS4A-202ENST00000562754 DPY19L2P1Q6NXN4 242 aa17.88■□□□□ 0.45
VPS4A-202ENST00000562754 GBP6Q6ZN66 633 aa17.88■□□□□ 0.45
VPS4A-202ENST00000562754 RABGGTAQ92696 567 aa17.88■□□□□ 0.45
VPS4A-202ENST00000562754 YME1L1Q96TA2 773 aa17.88■□□□□ 0.45
VPS4A-202ENST00000562754 PI4K2AQ9BTU6 479 aa17.88■□□□□ 0.45
VPS4A-202ENST00000562754 XYLT2Q9H1B5 865 aa17.88■□□□□ 0.45
VPS4A-202ENST00000562754 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.88■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms