RNA–Protein interactions for RNA: ENST00000561253.5

LRRC28-220, Transcript of leucine rich repeat containing 28, humanhuman

TSL 4

Gene LRRC28, Length 574 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-220ENST00000561253 NCKAP1LP55160 1127 aa7.08□□□□□ -1.28
LRRC28-220ENST00000561253 CACNB2Q08289 660 aaPredicted RBP7.08□□□□□ -1.28
LRRC28-220ENST00000561253 PRAMEF18Q5VWM3 479 aa7.08□□□□□ -1.28
LRRC28-220ENST00000561253 TEPPQ6URK8 271 aa7.08□□□□□ -1.28
LRRC28-220ENST00000561253 NECAB2Q7Z6G3 386 aa7.08□□□□□ -1.28
LRRC28-220ENST00000561253 ZNF589Q86UQ0 364 aaPredicted RBP7.08□□□□□ -1.28
LRRC28-220ENST00000561253 APOBEC3FQ8IUX4 373 aaKnown RBP7.08□□□□□ -1.28
LRRC28-220ENST00000561253 FBXO15Q8NCQ5 510 aaPredicted RBP7.08□□□□□ -1.28
LRRC28-220ENST00000561253 FAM151AQ8WW52 585 aa7.08□□□□□ -1.28
LRRC28-220ENST00000561253 CPA5Q8WXQ8 436 aa7.08□□□□□ -1.28
LRRC28-220ENST00000561253 DDX24Q9GZR7 859 aaKnown RBP eCLIP7.08□□□□□ -1.28
LRRC28-220ENST00000561253 TMEM39BQ9GZU3 492 aa7.08□□□□□ -1.28
LRRC28-220ENST00000561253 CNTD2Q9H8S5 307 aa7.08□□□□□ -1.28
LRRC28-220ENST00000561253 EPB41L4AQ9HCS5 686 aaPredicted RBP7.08□□□□□ -1.28
LRRC28-220ENST00000561253 USP40Q9NVE5 1235 aa7.08□□□□□ -1.28
LRRC28-220ENST00000561253 MBD1Q9UIS9 605 aaPredicted RBP7.08□□□□□ -1.28
LRRC28-220ENST00000561253 FAN1Q9Y2M0 1017 aa7.08□□□□□ -1.28
LRRC28-220ENST00000561253 PPP2R3BQ9Y5P8 575 aa7.08□□□□□ -1.28
LRRC28-220ENST00000561253 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP7.07□□□□□ -1.28
LRRC28-220ENST00000561253 DDTLA6NHG4 134 aaPredicted RBP7.07□□□□□ -1.28
LRRC28-220ENST00000561253 TCP10L2B9ZVM9 353 aa7.07□□□□□ -1.28
LRRC28-220ENST00000561253 SMIM22K7EJ46 135 aa7.07□□□□□ -1.28
LRRC28-220ENST00000561253 TGM5O43548 720 aa7.07□□□□□ -1.28
LRRC28-220ENST00000561253 PRKAB2O43741 272 aa7.07□□□□□ -1.28
LRRC28-220ENST00000561253 SEMA7AO75326 666 aa7.07□□□□□ -1.28
LRRC28-220ENST00000561253 MBD4O95243 580 aa7.07□□□□□ -1.28
LRRC28-220ENST00000561253 CHMLP26374 656 aa7.07□□□□□ -1.28
LRRC28-220ENST00000561253 CDR1P51861 262 aa7.07□□□□□ -1.28
LRRC28-220ENST00000561253 RBM5P52756 815 aaKnown RBP eCLIP7.07□□□□□ -1.28
LRRC28-220ENST00000561253 C1QTNF8P60827 252 aa7.07□□□□□ -1.28
LRRC28-220ENST00000561253 HERVK_113P62684 666 aa7.07□□□□□ -1.28
LRRC28-220ENST00000561253 GABPAQ06546 454 aa7.07□□□□□ -1.28
LRRC28-220ENST00000561253 CR1LQ2VPA4 569 aa7.07□□□□□ -1.28
LRRC28-220ENST00000561253 ZSCAN25Q6NSZ9 544 aa7.07□□□□□ -1.28
LRRC28-220ENST00000561253 FERMT3Q86UX7 667 aa7.07□□□□□ -1.28
LRRC28-220ENST00000561253 CERS3Q8IU89 383 aa7.07□□□□□ -1.28
LRRC28-220ENST00000561253 ZZZ3Q8IYH5 903 aa7.07□□□□□ -1.28
LRRC28-220ENST00000561253 FAM26EQ8N5C1 309 aa7.07□□□□□ -1.28
LRRC28-220ENST00000561253 SLC5A5Q92911 643 aa7.07□□□□□ -1.28
LRRC28-220ENST00000561253 DCPSQ96C86 337 aaKnown RBP7.07□□□□□ -1.28
LRRC28-220ENST00000561253 CDCA5Q96FF9 252 aa7.07□□□□□ -1.28
LRRC28-220ENST00000561253 FSD1Q9BTV5 496 aa7.07□□□□□ -1.28
LRRC28-220ENST00000561253 OSBPL5Q9H0X9 879 aaPredicted RBP7.07□□□□□ -1.28
LRRC28-220ENST00000561253 DNAJC18Q9H819 358 aa7.07□□□□□ -1.28
LRRC28-220ENST00000561253 ARMT1Q9H993 441 aa7.07□□□□□ -1.28
LRRC28-220ENST00000561253 VEZTQ9HBM0 779 aa7.07□□□□□ -1.28
LRRC28-220ENST00000561253 DDX56Q9NY93 547 aaKnown RBP7.07□□□□□ -1.28
LRRC28-220ENST00000561253 ARHGAP28Q9P2N2 729 aa7.07□□□□□ -1.28
LRRC28-220ENST00000561253 PCDHA5Q9Y5H7 936 aa7.07□□□□□ -1.28
LRRC28-220ENST00000561253 PAPPA2Q9BXP8 1791 aa7.07□□□□□ -1.28
LRRC28-220ENST00000561253 MYH7P12883 1935 aa7.07□□□□□ -1.28
LRRC28-220ENST00000561253 SIPA1L1O43166 1804 aa7.06□□□□□ -1.28
LRRC28-220ENST00000561253 GPAA1O43292 621 aa7.06□□□□□ -1.28
LRRC28-220ENST00000561253 BAG3O95817 575 aa7.06□□□□□ -1.28
LRRC28-220ENST00000561253 MMEP08473 750 aa7.06□□□□□ -1.28
LRRC28-220ENST00000561253 CYP2C8P10632 490 aa7.06□□□□□ -1.28
LRRC28-220ENST00000561253 PTX3P26022 381 aaPredicted RBP7.06□□□□□ -1.28
LRRC28-220ENST00000561253 LSP1P33241 339 aa7.06□□□□□ -1.28
LRRC28-220ENST00000561253 MC3RP41968 323 aa7.06□□□□□ -1.28
LRRC28-220ENST00000561253 FNTBP49356 437 aa7.06□□□□□ -1.28
LRRC28-220ENST00000561253 SESN3P58005 492 aa7.06□□□□□ -1.28
LRRC28-220ENST00000561253 DBPQ10586 325 aaPredicted RBP7.06□□□□□ -1.28
LRRC28-220ENST00000561253 TNFAIP1Q13829 316 aa7.06□□□□□ -1.28
LRRC28-220ENST00000561253 RRP1BQ14684 758 aaKnown RBP7.06□□□□□ -1.28
LRRC28-220ENST00000561253 CATSPEREQ5SY80 951 aa7.06□□□□□ -1.28
LRRC28-220ENST00000561253 VPS53Q5VIR6 699 aa7.06□□□□□ -1.28
LRRC28-220ENST00000561253 BROXQ5VW32 411 aa7.06□□□□□ -1.28
LRRC28-220ENST00000561253 CD276Q5ZPR3 534 aa7.06□□□□□ -1.28
LRRC28-220ENST00000561253 VASNQ6EMK4 673 aa7.06□□□□□ -1.28
LRRC28-220ENST00000561253 CCDC129Q6ZRS4 1044 aa7.06□□□□□ -1.28
LRRC28-220ENST00000561253 TEX11Q8IYF3 940 aa7.06□□□□□ -1.28
LRRC28-220ENST00000561253 HIPK4Q8NE63 616 aa7.06□□□□□ -1.28
LRRC28-220ENST00000561253 MZB1Q8WU39 189 aa7.06□□□□□ -1.28
LRRC28-220ENST00000561253 TGFBRAP1Q8WUH2 860 aa7.06□□□□□ -1.28
LRRC28-220ENST00000561253 SDR42E1Q8WUS8 393 aa7.06□□□□□ -1.28
LRRC28-220ENST00000561253 ERCC4Q92889 916 aaPredicted RBP7.06□□□□□ -1.28
LRRC28-220ENST00000561253 GBP4Q96PP9 640 aa7.06□□□□□ -1.28
LRRC28-220ENST00000561253 SGPP1Q9BX95 441 aa7.06□□□□□ -1.28
LRRC28-220ENST00000561253 HELLSQ9NRZ9 838 aa7.06□□□□□ -1.28
LRRC28-220ENST00000561253 TYW1Q9NV66 732 aaKnown RBP7.06□□□□□ -1.28
LRRC28-220ENST00000561253 HSPBP1Q9NZL4 362 aa7.06□□□□□ -1.28
LRRC28-220ENST00000561253 ZNF112Q9UJU3 913 aa7.06□□□□□ -1.28
LRRC28-220ENST00000561253 CDK5RAP2Q96SN8 1893 aa7.06□□□□□ -1.28
LRRC28-220ENST00000561253 FOCADQ5VW36 1801 aa7.06□□□□□ -1.28
LRRC28-220ENST00000561253 HTTP42858 3142 aa7.05□□□□□ -1.28
LRRC28-220ENST00000561253 N4BP3O15049 544 aa7.05□□□□□ -1.28
LRRC28-220ENST00000561253 C8BP07358 591 aa7.05□□□□□ -1.28
LRRC28-220ENST00000561253 ENO2P09104 434 aaPredicted RBP7.05□□□□□ -1.28
LRRC28-220ENST00000561253 CD40P25942 277 aa7.05□□□□□ -1.28
LRRC28-220ENST00000561253 PLCD1P51178 756 aa7.05□□□□□ -1.28
LRRC28-220ENST00000561253 PHC1P78364 1004 aa7.05□□□□□ -1.28
LRRC28-220ENST00000561253 SMAD3P84022 425 aaKnown RBP7.05□□□□□ -1.28
LRRC28-220ENST00000561253 TCP10Q12799 353 aa7.05□□□□□ -1.28
LRRC28-220ENST00000561253 FAPQ12884 760 aa7.05□□□□□ -1.28
LRRC28-220ENST00000561253 ALX1Q15699 326 aa7.05□□□□□ -1.28
LRRC28-220ENST00000561253 SMAD2Q15796 467 aaKnown RBP7.05□□□□□ -1.28
LRRC28-220ENST00000561253 MCMDC2Q4G0Z9 681 aa7.05□□□□□ -1.28
LRRC28-220ENST00000561253 GPR158Q5T848 1215 aa7.05□□□□□ -1.28
LRRC28-220ENST00000561253 MCTP1Q6DN14 999 aa7.05□□□□□ -1.28
LRRC28-220ENST00000561253 MOB2Q70IA6 237 aa7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms