RNA–Protein interactions for RNA: ENST00000559961.1

SNX1-209, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-209ENST00000559961 TSPAN18Q96SJ8 248 aa13.72□□□□□ -0.21
SNX1-209ENST00000559961 OXCT2Q9BYC2 517 aaPredicted RBP13.72□□□□□ -0.21
SNX1-209ENST00000559961 PARVGQ9HBI0 331 aa13.72□□□□□ -0.21
SNX1-209ENST00000559961 FAM86C1Q9NVL1 165 aa13.72□□□□□ -0.21
SNX1-209ENST00000559961 CNTN3Q9P232 1028 aa13.72□□□□□ -0.21
SNX1-209ENST00000559961 MAFFQ9ULX9 164 aa13.72□□□□□ -0.21
SNX1-209ENST00000559961 C5orf42Q9H799 3197 aa13.71□□□□□ -0.21
SNX1-209ENST00000559961 I3L4J1 428 aa13.71□□□□□ -0.21
SNX1-209ENST00000559961 K7ENM7 598 aa13.71□□□□□ -0.21
SNX1-209ENST00000559961 NARSO43776 548 aaKnown RBP13.71□□□□□ -0.21
SNX1-209ENST00000559961 N4BP1O75113 896 aaKnown RBP13.71□□□□□ -0.21
SNX1-209ENST00000559961 PROZP22891 400 aa13.71□□□□□ -0.21
SNX1-209ENST00000559961 SLC12A3P55017 1021 aa13.71□□□□□ -0.21
SNX1-209ENST00000559961 VARS2Q5ST30 1063 aaKnown RBP13.71□□□□□ -0.21
SNX1-209ENST00000559961 CYP4A22Q5TCH4 519 aa13.71□□□□□ -0.21
SNX1-209ENST00000559961 TPGS2Q68CL5 300 aa13.71□□□□□ -0.21
SNX1-209ENST00000559961 KCNK18Q7Z418 384 aa13.71□□□□□ -0.21
SNX1-209ENST00000559961 KIF12Q96FN5 646 aa13.71□□□□□ -0.21
SNX1-209ENST00000559961 ZBTB45Q96K62 511 aaPredicted RBP13.71□□□□□ -0.21
SNX1-209ENST00000559961 ZNF512Q96ME7 567 aaPredicted RBP13.71□□□□□ -0.21
SNX1-209ENST00000559961 PNMA5Q96PV4 448 aa13.71□□□□□ -0.21
SNX1-209ENST00000559961 CXCL16Q9H2A7 254 aa13.71□□□□□ -0.21
SNX1-209ENST00000559961 RPF1Q9H9Y2 349 aaKnown RBP13.71□□□□□ -0.21
SNX1-209ENST00000559961 CYP4F11Q9HBI6 524 aa13.71□□□□□ -0.21
SNX1-209ENST00000559961 UBQLN1Q9UMX0 589 aaKnown RBP13.71□□□□□ -0.21
SNX1-209ENST00000559961 NUMBLQ9Y6R0 609 aa13.71□□□□□ -0.21
SNX1-209ENST00000559961 ANHXE9PGG2 379 aa13.7□□□□□ -0.22
SNX1-209ENST00000559961 TULP1O00294 542 aaPredicted RBP13.7□□□□□ -0.22
SNX1-209ENST00000559961 ADAM12O43184 909 aa13.7□□□□□ -0.22
SNX1-209ENST00000559961 TRAK2O60296 914 aa13.7□□□□□ -0.22
SNX1-209ENST00000559961 CPB1P15086 417 aa13.7□□□□□ -0.22
SNX1-209ENST00000559961 PAX3P23760 479 aa13.7□□□□□ -0.22
SNX1-209ENST00000559961 MCL1Q07820 350 aa13.7□□□□□ -0.22
SNX1-209ENST00000559961 MAPK7Q13164 816 aa13.7□□□□□ -0.22
SNX1-209ENST00000559961 HTR4Q13639 388 aa13.7□□□□□ -0.22
SNX1-209ENST00000559961 TMEM119Q4V9L6 283 aa13.7□□□□□ -0.22
SNX1-209ENST00000559961 SLC8B1Q6J4K2 584 aa13.7□□□□□ -0.22
SNX1-209ENST00000559961 DSTYKQ6XUX3 929 aa13.7□□□□□ -0.22
SNX1-209ENST00000559961 TAS1R3Q7RTX0 852 aa13.7□□□□□ -0.22
SNX1-209ENST00000559961 CD302Q8IX05 232 aa13.7□□□□□ -0.22
SNX1-209ENST00000559961 CCDC105Q8IYK2 499 aa13.7□□□□□ -0.22
SNX1-209ENST00000559961 DTWD2Q8NBA8 298 aa13.7□□□□□ -0.22
SNX1-209ENST00000559961 FEZF2Q8TBJ5 459 aa13.7□□□□□ -0.22
SNX1-209ENST00000559961 GPR152Q8TDT2 470 aa13.7□□□□□ -0.22
SNX1-209ENST00000559961 FGF13Q92913 245 aa13.7□□□□□ -0.22
SNX1-209ENST00000559961 NKD2Q969F2 451 aaPredicted RBP13.7□□□□□ -0.22
SNX1-209ENST00000559961 FAM212AQ96EL1 285 aa13.7□□□□□ -0.22
SNX1-209ENST00000559961 MSTO1Q9BUK6 570 aa13.7□□□□□ -0.22
SNX1-209ENST00000559961 TBC1D17Q9HA65 648 aa13.7□□□□□ -0.22
SNX1-209ENST00000559961 ARHGEF3Q9NR81 526 aa13.7□□□□□ -0.22
SNX1-209ENST00000559961 SLC2A4RGQ9NR83 387 aa13.7□□□□□ -0.22
SNX1-209ENST00000559961 GDE1Q9NZC3 331 aa13.7□□□□□ -0.22
SNX1-209ENST00000559961 SIT1Q9Y3P8 196 aa13.7□□□□□ -0.22
SNX1-209ENST00000559961 NPHP3-ACAD11A0A0J9YXS1 232 aa13.69□□□□□ -0.22
SNX1-209ENST00000559961 ATF2P15336 505 aa13.69□□□□□ -0.22
SNX1-209ENST00000559961 CYP3A5P20815 502 aa13.69□□□□□ -0.22
SNX1-209ENST00000559961 NCKAP1LP55160 1127 aa13.69□□□□□ -0.22
SNX1-209ENST00000559961 NTHL1P78549 312 aa13.69□□□□□ -0.22
SNX1-209ENST00000559961 ROR1Q01973 937 aa13.69□□□□□ -0.22
SNX1-209ENST00000559961 CACNB1Q02641 598 aaPredicted RBP13.69□□□□□ -0.22
SNX1-209ENST00000559961 SOX4Q06945 474 aaPredicted RBP13.69□□□□□ -0.22
SNX1-209ENST00000559961 PLD1Q13393 1074 aa13.69□□□□□ -0.22
SNX1-209ENST00000559961 SF3A1Q15459 793 aaKnown RBP13.69□□□□□ -0.22
SNX1-209ENST00000559961 SEZ6Q53EL9 994 aa13.69□□□□□ -0.22
SNX1-209ENST00000559961 SLFN12LQ6IEE8 588 aa13.69□□□□□ -0.22
SNX1-209ENST00000559961 PHLDB3Q6NSJ2 640 aa13.69□□□□□ -0.22
SNX1-209ENST00000559961 ARMCX5Q6P1M9 558 aa13.69□□□□□ -0.22
SNX1-209ENST00000559961 PDZD4Q76G19 769 aaPredicted RBP13.69□□□□□ -0.22
SNX1-209ENST00000559961 BEST2Q8NFU1 509 aa13.69□□□□□ -0.22
SNX1-209ENST00000559961 KCNG4Q8TDN1 519 aa13.69□□□□□ -0.22
SNX1-209ENST00000559961 RAD54LQ92698 747 aa13.69□□□□□ -0.22
SNX1-209ENST00000559961 C18orf25Q96B23 403 aaPredicted RBP13.69□□□□□ -0.22
SNX1-209ENST00000559961 SUSD3Q96L08 255 aa13.69□□□□□ -0.22
SNX1-209ENST00000559961 ZMAT2Q96NC0 199 aaKnown RBP13.69□□□□□ -0.22
SNX1-209ENST00000559961 TBC1D32Q96NH3 1257 aa13.69□□□□□ -0.22
SNX1-209ENST00000559961 REEP2Q9BRK0 252 aa13.69□□□□□ -0.22
SNX1-209ENST00000559961 TBX20Q9UMR3 447 aa13.69□□□□□ -0.22
SNX1-209ENST00000559961 PCDHB8Q9UN66 801 aa13.69□□□□□ -0.22
SNX1-209ENST00000559961 TDRD15B5MCY1 1934 aaKnown RBP13.68□□□□□ -0.22
SNX1-209ENST00000559961 OGTO15294 1046 aa13.68□□□□□ -0.22
SNX1-209ENST00000559961 NCAM2O15394 837 aa13.68□□□□□ -0.22
SNX1-209ENST00000559961 RHOP08100 348 aa13.68□□□□□ -0.22
SNX1-209ENST00000559961 CXCL8P10145 99 aa13.68□□□□□ -0.22
SNX1-209ENST00000559961 DDIT3P35638 169 aa13.68□□□□□ -0.22
SNX1-209ENST00000559961 YWHAHQ04917 246 aaPredicted RBP13.68□□□□□ -0.22
SNX1-209ENST00000559961 MCM6Q14566 821 aa13.68□□□□□ -0.22
SNX1-209ENST00000559961 KARSQ15046 597 aaKnown RBP13.68□□□□□ -0.22
SNX1-209ENST00000559961 ANGPT1Q15389 498 aa13.68□□□□□ -0.22
SNX1-209ENST00000559961 SLC10A6Q3KNW5 377 aa13.68□□□□□ -0.22
SNX1-209ENST00000559961 SPECC1Q5M775 1068 aa13.68□□□□□ -0.22
SNX1-209ENST00000559961 PARM1Q6UWI2 310 aa13.68□□□□□ -0.22
SNX1-209ENST00000559961 TCEAL8Q8IYN2 117 aa13.68□□□□□ -0.22
SNX1-209ENST00000559961 LEMD2Q8NC56 503 aa13.68□□□□□ -0.22
SNX1-209ENST00000559961 C3orf58Q8NDZ4 430 aa13.68□□□□□ -0.22
SNX1-209ENST00000559961 LARP4BQ92615 738 aaKnown RBP13.68□□□□□ -0.22
SNX1-209ENST00000559961 DDX12PQ92771 950 aa13.68□□□□□ -0.22
SNX1-209ENST00000559961 MCRS1Q96EZ8 462 aa13.68□□□□□ -0.22
SNX1-209ENST00000559961 PHOX2BQ99453 314 aa13.68□□□□□ -0.22
SNX1-209ENST00000559961 CORO1BQ9BR76 489 aa13.68□□□□□ -0.22
SNX1-209ENST00000559961 DNMT3BQ9UBC3 853 aaKnown RBP13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms