RNA–Protein interactions for RNA: ENST00000559886.1

HERC1-205, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 1 (best)

Gene HERC1, Length 2,462 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-205ENST00000559886 JAM2P57087 298 aa13.14□□□□□ -0.31
HERC1-205ENST00000559886 SCARA3Q6AZY7 606 aa13.14□□□□□ -0.31
HERC1-205ENST00000559886 ARHGEF19Q8IW93 802 aa13.14□□□□□ -0.31
HERC1-205ENST00000559886 C1orf127Q8N9H9 656 aa13.14□□□□□ -0.31
HERC1-205ENST00000559886 CCDC112Q8NEF3 446 aa13.14□□□□□ -0.31
HERC1-205ENST00000559886 DBF4BQ8NFT6 615 aa13.14□□□□□ -0.31
HERC1-205ENST00000559886 CXorf38Q8TB03 319 aa13.14□□□□□ -0.31
HERC1-205ENST00000559886 SCLYQ96I15 445 aa13.14□□□□□ -0.31
HERC1-205ENST00000559886 PI4K2AQ9BTU6 479 aa13.14□□□□□ -0.31
HERC1-205ENST00000559886 TSPYL2Q9H2G4 693 aaPredicted RBP13.14□□□□□ -0.31
HERC1-205ENST00000559886 SIX4Q9UIU6 781 aa13.14□□□□□ -0.31
HERC1-205ENST00000559886 SMIM28A0A1B0GU29 152 aa13.13□□□□□ -0.31
HERC1-205ENST00000559886 LRRC53A6NM62 1247 aa13.13□□□□□ -0.31
HERC1-205ENST00000559886 MEIS3P2A8K0S8 358 aa13.13□□□□□ -0.31
HERC1-205ENST00000559886 C9IYK1 514 aa13.13□□□□□ -0.31
HERC1-205ENST00000559886 CCL23P55773 120 aa13.13□□□□□ -0.31
HERC1-205ENST00000559886 TSR1Q2NL82 804 aaKnown RBP13.13□□□□□ -0.31
HERC1-205ENST00000559886 WDR44Q5JSH3 913 aa13.13□□□□□ -0.31
HERC1-205ENST00000559886 AGMOQ6ZNB7 445 aa13.13□□□□□ -0.31
HERC1-205ENST00000559886 SLC24A5Q71RS6 500 aa13.13□□□□□ -0.31
HERC1-205ENST00000559886 HELQQ8TDG4 1101 aa13.13□□□□□ -0.31
HERC1-205ENST00000559886 LINC01599Q8WXQ3 324 aa13.13□□□□□ -0.31
HERC1-205ENST00000559886 SEPT8Q92599 483 aa13.13□□□□□ -0.31
HERC1-205ENST00000559886 SYN2Q92777 582 aaPredicted RBP13.13□□□□□ -0.31
HERC1-205ENST00000559886 APBB2Q92870 758 aa13.13□□□□□ -0.31
HERC1-205ENST00000559886 BAG1Q99933 345 aaPredicted RBP13.13□□□□□ -0.31
HERC1-205ENST00000559886 STK33Q9BYT3 514 aa13.13□□□□□ -0.31
HERC1-205ENST00000559886 UBE2TQ9NPD8 197 aaPredicted RBP13.13□□□□□ -0.31
HERC1-205ENST00000559886 GIT1Q9Y2X7 761 aa13.13□□□□□ -0.31
HERC1-205ENST00000559886 TDRD15B5MCY1 1934 aaKnown RBP13.13□□□□□ -0.31
HERC1-205ENST00000559886 ALPK3Q96L96 1907 aa13.13□□□□□ -0.31
HERC1-205ENST00000559886 SCN1AP35498 2009 aa13.13□□□□□ -0.31
HERC1-205ENST00000559886 ASS1P00966 412 aaKnown RBP13.13□□□□□ -0.31
HERC1-205ENST00000559886 SKILP12757 684 aa13.13□□□□□ -0.31
HERC1-205ENST00000559886 FAM189BP81408 668 aa13.13□□□□□ -0.31
HERC1-205ENST00000559886 TRPC3Q13507 836 aa13.13□□□□□ -0.31
HERC1-205ENST00000559886 RAPGEF1Q13905 1077 aa13.13□□□□□ -0.31
HERC1-205ENST00000559886 MEA1Q16626 185 aa13.13□□□□□ -0.31
HERC1-205ENST00000559886 SGSM1Q2NKQ1 1148 aa13.13□□□□□ -0.31
HERC1-205ENST00000559886 WDR59Q6PJI9 974 aa13.13□□□□□ -0.31
HERC1-205ENST00000559886 ZNF598Q86UK7 904 aaKnown RBP13.13□□□□□ -0.31
HERC1-205ENST00000559886 ECHDC2Q86YB7 292 aa13.13□□□□□ -0.31
HERC1-205ENST00000559886 LPPQ93052 612 aa13.13□□□□□ -0.31
HERC1-205ENST00000559886 TATDN2Q93075 761 aa13.13□□□□□ -0.31
HERC1-205ENST00000559886 SPAG5Q96R06 1193 aa13.13□□□□□ -0.31
HERC1-205ENST00000559886 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.13□□□□□ -0.312e-7■■■■■ 193.3
HERC1-205ENST00000559886 DPP3Q9NY33 737 aa13.13□□□□□ -0.31
HERC1-205ENST00000559886 ITGA11Q9UKX5 1188 aa13.13□□□□□ -0.31
HERC1-205ENST00000559886 MICAL3Q7RTP6 2002 aa13.12□□□□□ -0.31
HERC1-205ENST00000559886 ITGB3P05106 788 aa13.12□□□□□ -0.31
HERC1-205ENST00000559886 MYL6P60660 151 aa13.12□□□□□ -0.31
HERC1-205ENST00000559886 GCNT1Q02742 428 aa13.12□□□□□ -0.31
HERC1-205ENST00000559886 GLRA4Q5JXX5 417 aa13.12□□□□□ -0.31
HERC1-205ENST00000559886 E4F1Q66K89 784 aaPredicted RBP13.12□□□□□ -0.31
HERC1-205ENST00000559886 PPM1KQ8N3J5 372 aa13.12□□□□□ -0.31
HERC1-205ENST00000559886 PGBD4Q96DM1 585 aa13.12□□□□□ -0.31
HERC1-205ENST00000559886 FAM81BQ96LP2 452 aa13.12□□□□□ -0.31
HERC1-205ENST00000559886 ZFP42Q96MM3 310 aa13.12□□□□□ -0.31
HERC1-205ENST00000559886 IMPG2Q9BZV3 1241 aa13.12□□□□□ -0.31
HERC1-205ENST00000559886 XYLT2Q9H1B5 865 aa13.12□□□□□ -0.31
HERC1-205ENST00000559886 C1orf112Q9NSG2 853 aa13.12□□□□□ -0.31
HERC1-205ENST00000559886 AIPL1Q9NZN9 384 aa13.12□□□□□ -0.31
HERC1-205ENST00000559886 UBQLN1Q9UMX0 589 aaKnown RBP13.12□□□□□ -0.31
HERC1-205ENST00000559886 TTC3P53804 2025 aa13.12□□□□□ -0.31
HERC1-205ENST00000559886 PTGESO14684 152 aa13.12□□□□□ -0.31
HERC1-205ENST00000559886 KIAA0355O15063 1070 aa13.12□□□□□ -0.31
HERC1-205ENST00000559886 NRDCO43847 1150 aa13.12□□□□□ -0.31
HERC1-205ENST00000559886 EOMESO95936 686 aa13.12□□□□□ -0.31
HERC1-205ENST00000559886 NOP14P78316 857 aaKnown RBP13.12□□□□□ -0.31
HERC1-205ENST00000559886 DRAP1Q14919 205 aaPredicted RBP13.12□□□□□ -0.31
HERC1-205ENST00000559886 SFMBT2Q5VUG0 894 aa13.12□□□□□ -0.31
HERC1-205ENST00000559886 GSTCDQ8NEC7 633 aa13.12□□□□□ -0.31
HERC1-205ENST00000559886 BEST2Q8NFU1 509 aa13.12□□□□□ -0.31
HERC1-205ENST00000559886 TAF4BQ92750 862 aa13.12□□□□□ -0.31
HERC1-205ENST00000559886 ELMO3Q96BJ8 720 aa13.12□□□□□ -0.31
HERC1-205ENST00000559886 KREMEN1Q96MU8 473 aa13.12□□□□□ -0.31
HERC1-205ENST00000559886 GPR88Q9GZN0 384 aa13.12□□□□□ -0.31
HERC1-205ENST00000559886 APOBEC3GQ9HC16 384 aaKnown RBP13.12□□□□□ -0.31
HERC1-205ENST00000559886 UBN1Q9NPG3 1134 aa13.12□□□□□ -0.31
HERC1-205ENST00000559886 ZNHIT6Q9NWK9 470 aaKnown RBP13.12□□□□□ -0.31
HERC1-205ENST00000559886 ARL5CA6NH57 179 aa13.11□□□□□ -0.31
HERC1-205ENST00000559886 F8VZ95 297 aa13.11□□□□□ -0.31
HERC1-205ENST00000559886 ENPP3O14638 875 aa13.11□□□□□ -0.31
HERC1-205ENST00000559886 XPOTO43592 962 aaKnown RBP13.11□□□□□ -0.31
HERC1-205ENST00000559886 KRT19P08727 400 aa13.11□□□□□ -0.31
HERC1-205ENST00000559886 MLH1P40692 756 aa13.11□□□□□ -0.31
HERC1-205ENST00000559886 GUCY2FP51841 1108 aa13.11□□□□□ -0.31
HERC1-205ENST00000559886 MFAP3P55082 362 aa13.11□□□□□ -0.31
HERC1-205ENST00000559886 CDK17Q00537 523 aa13.11□□□□□ -0.31
HERC1-205ENST00000559886 SPOPLQ6IQ16 392 aa13.11□□□□□ -0.31
HERC1-205ENST00000559886 ENOSF1Q7L5Y1 443 aa13.11□□□□□ -0.31
HERC1-205ENST00000559886 TMEM130Q8N3G9 435 aa13.11□□□□□ -0.31
HERC1-205ENST00000559886 C18orf25Q96B23 403 aaPredicted RBP13.11□□□□□ -0.31
HERC1-205ENST00000559886 PPP1R10Q96QC0 940 aaKnown RBP13.11□□□□□ -0.31
HERC1-205ENST00000559886 GAD1Q99259 594 aa13.11□□□□□ -0.31
HERC1-205ENST00000559886 RSAD1Q9HA92 442 aa13.11□□□□□ -0.31
HERC1-205ENST00000559886 RNF19AQ9NV58 838 aa13.11□□□□□ -0.31
HERC1-205ENST00000559886 TUBGCP4Q9UGJ1 667 aa13.11□□□□□ -0.31
HERC1-205ENST00000559886 NUB1Q9Y5A7 615 aa13.11□□□□□ -0.31
HERC1-205ENST00000559886 TRIM43BA6NCK2 446 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms