RNA–Protein interactions for RNA: ENST00000558561.1

SPG11-211, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 555 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-211ENST00000558561 PUM2Q8TB72 1066 aaKnown RBP eCLIP4.98□□□□□ -1.61
SPG11-211ENST00000558561 RAET1EQ8TD07 263 aa4.98□□□□□ -1.61
SPG11-211ENST00000558561 SCLYQ96I15 445 aa4.98□□□□□ -1.61
SPG11-211ENST00000558561 MRPL4Q9BYD3 311 aaKnown RBP4.98□□□□□ -1.61
SPG11-211ENST00000558561 UBA5Q9GZZ9 404 aa4.98□□□□□ -1.61
SPG11-211ENST00000558561 LSG1Q9H089 658 aaKnown RBP4.98□□□□□ -1.61
SPG11-211ENST00000558561 EPB41L4BQ9H329 900 aa4.98□□□□□ -1.61
SPG11-211ENST00000558561 BCAS3Q9H6U6 928 aa4.98□□□□□ -1.61
SPG11-211ENST00000558561 RAVER2Q9HCJ3 691 aaKnown RBP4.98□□□□□ -1.61
SPG11-211ENST00000558561 TOMM22Q9NS69 142 aa4.98□□□□□ -1.61
SPG11-211ENST00000558561 ZNF536O15090 1300 aa4.97□□□□□ -1.61
SPG11-211ENST00000558561 BRCA2P51587 3418 aa4.97□□□□□ -1.61
SPG11-211ENST00000558561 ROBO3Q96MS0 1386 aa4.97□□□□□ -1.61
SPG11-211ENST00000558561 TSPY2A6NKD2 308 aa4.97□□□□□ -1.61
SPG11-211ENST00000558561 VWA5AO00534 786 aa4.97□□□□□ -1.61
SPG11-211ENST00000558561 AQP7O14520 342 aa4.97□□□□□ -1.61
SPG11-211ENST00000558561 ZNF213O14771 459 aa4.97□□□□□ -1.61
SPG11-211ENST00000558561 PLD2O14939 933 aa4.97□□□□□ -1.61
SPG11-211ENST00000558561 ORC4O43929 436 aa4.97□□□□□ -1.61
SPG11-211ENST00000558561 CDC45O75419 566 aa4.97□□□□□ -1.61
SPG11-211ENST00000558561 RASGRP1O95267 797 aa4.97□□□□□ -1.61
SPG11-211ENST00000558561 SOD2P04179 222 aa4.97□□□□□ -1.61
SPG11-211ENST00000558561 SRGAP2CP0DJJ0 459 aa4.97□□□□□ -1.61
SPG11-211ENST00000558561 COL6A2P12110 1019 aa4.97□□□□□ -1.61
SPG11-211ENST00000558561 GCLCP48506 637 aaPredicted RBP4.97□□□□□ -1.61
SPG11-211ENST00000558561 MAPKAPK2P49137 400 aa4.97□□□□□ -1.61
SPG11-211ENST00000558561 USP14P54578 494 aa4.97□□□□□ -1.61
SPG11-211ENST00000558561 ANTXR2P58335 489 aa4.97□□□□□ -1.61
SPG11-211ENST00000558561 SRSF3P84103 164 aaKnown RBP4.97□□□□□ -1.61
SPG11-211ENST00000558561 MESP2Q0VG99 397 aa4.97□□□□□ -1.61
SPG11-211ENST00000558561 KIF22Q14807 665 aa4.97□□□□□ -1.61
SPG11-211ENST00000558561 NR1I3Q14994 352 aa4.97□□□□□ -1.61
SPG11-211ENST00000558561 FAM110CQ1W6H9 321 aa4.97□□□□□ -1.61
SPG11-211ENST00000558561 KIZQ2M2Z5 673 aa4.97□□□□□ -1.61
SPG11-211ENST00000558561 PLEKHN1Q494U1 663 aaPredicted RBP4.97□□□□□ -1.61
SPG11-211ENST00000558561 SLC9C1Q4G0N8 1177 aa4.97□□□□□ -1.61
SPG11-211ENST00000558561 TRIM61Q5EBN2 209 aa4.97□□□□□ -1.61
SPG11-211ENST00000558561 MUM1L1Q5H9M0 696 aa4.97□□□□□ -1.61
SPG11-211ENST00000558561 MFSD6Q6ZSS7 791 aa4.97□□□□□ -1.61
SPG11-211ENST00000558561 BRAPQ7Z569 592 aa4.97□□□□□ -1.61
SPG11-211ENST00000558561 FGD2Q7Z6J4 655 aa4.97□□□□□ -1.61
SPG11-211ENST00000558561 PLEKHH3Q7Z736 793 aa4.97□□□□□ -1.61
SPG11-211ENST00000558561 MTDHQ86UE4 582 aaKnown RBP4.97□□□□□ -1.61
SPG11-211ENST00000558561 PCDH19Q8TAB3 1148 aa4.97□□□□□ -1.61
SPG11-211ENST00000558561 DIS3LQ8TF46 1054 aaKnown RBP4.97□□□□□ -1.61
SPG11-211ENST00000558561 MAP4K1Q92918 833 aa4.97□□□□□ -1.61
SPG11-211ENST00000558561 CCDC136Q96JN2 1154 aa4.97□□□□□ -1.61
SPG11-211ENST00000558561 MAGEB10Q96LZ2 347 aaPredicted RBP4.97□□□□□ -1.61
SPG11-211ENST00000558561 TCEANC2Q96MN5 208 aa4.97□□□□□ -1.61
SPG11-211ENST00000558561 DEFB118Q96PH6 123 aa4.97□□□□□ -1.61
SPG11-211ENST00000558561 ALG1Q9BT22 464 aa4.97□□□□□ -1.61
SPG11-211ENST00000558561 SGPP1Q9BX95 441 aa4.97□□□□□ -1.61
SPG11-211ENST00000558561 LRRC2Q9BYS8 371 aa4.97□□□□□ -1.61
SPG11-211ENST00000558561 NACAP1Q9BZK3 213 aa4.97□□□□□ -1.61
SPG11-211ENST00000558561 SPATC1LQ9H0A9 340 aa4.97□□□□□ -1.61
SPG11-211ENST00000558561 IPPKQ9H8X2 491 aa4.97□□□□□ -1.61
SPG11-211ENST00000558561 VAT1LQ9HCJ6 419 aa4.97□□□□□ -1.61
SPG11-211ENST00000558561 TRIM39Q9HCM9 518 aa4.97□□□□□ -1.61
SPG11-211ENST00000558561 DIAPH3Q9NSV4 1193 aa4.97□□□□□ -1.61
SPG11-211ENST00000558561 HOXC10Q9NYD6 342 aa4.97□□□□□ -1.61
SPG11-211ENST00000558561 SFMBT1Q9UHJ3 866 aa4.97□□□□□ -1.61
SPG11-211ENST00000558561 DBR1Q9UK59 544 aaKnown RBP4.97□□□□□ -1.61
SPG11-211ENST00000558561 STX8Q9UNK0 236 aa4.97□□□□□ -1.61
SPG11-211ENST00000558561 PLA2G2DQ9UNK4 145 aa4.97□□□□□ -1.61
SPG11-211ENST00000558561 TMA7Q9Y2S6 64 aaKnown RBP4.97□□□□□ -1.61
SPG11-211ENST00000558561 RABGAP1Q9Y3P9 1069 aa4.97□□□□□ -1.61
SPG11-211ENST00000558561 ALPK3Q96L96 1907 aa4.96□□□□□ -1.62
SPG11-211ENST00000558561 LAMA4Q16363 1823 aa4.96□□□□□ -1.62
SPG11-211ENST00000558561 E7EWF7 191 aa4.96□□□□□ -1.62
SPG11-211ENST00000558561 WDR46O15213 610 aaKnown RBP4.96□□□□□ -1.62
SPG11-211ENST00000558561 PAX4O43316 350 aa4.96□□□□□ -1.62
SPG11-211ENST00000558561 SGPL1O95470 568 aa4.96□□□□□ -1.62
SPG11-211ENST00000558561 TTLL1O95922 423 aa4.96□□□□□ -1.62
SPG11-211ENST00000558561 GRK2P25098 689 aa4.96□□□□□ -1.62
SPG11-211ENST00000558561 HOXD10P28358 340 aa4.96□□□□□ -1.62
SPG11-211ENST00000558561 ADORA2AP29274 412 aa4.96□□□□□ -1.62
SPG11-211ENST00000558561 GRK3P35626 688 aa4.96□□□□□ -1.62
SPG11-211ENST00000558561 STAT3P40763 770 aa4.96□□□□□ -1.62
SPG11-211ENST00000558561 CNTN2Q02246 1040 aa4.96□□□□□ -1.62
SPG11-211ENST00000558561 PAK1Q13153 545 aa4.96□□□□□ -1.62
SPG11-211ENST00000558561 PABPC4Q13310 644 aaKnown RBP eCLIP4.96□□□□□ -1.62
SPG11-211ENST00000558561 NECTIN1Q15223 517 aa4.96□□□□□ -1.62
SPG11-211ENST00000558561 SEC23AQ15436 765 aa4.96□□□□□ -1.62
SPG11-211ENST00000558561 TCEA2Q15560 299 aa4.96□□□□□ -1.62
SPG11-211ENST00000558561 ADCK5Q3MIX3 580 aa4.96□□□□□ -1.62
SPG11-211ENST00000558561 MROH9Q5TGP6 573 aa4.96□□□□□ -1.62
SPG11-211ENST00000558561 SDE2Q6IQ49 451 aa4.96□□□□□ -1.62
SPG11-211ENST00000558561 CCDC174Q6PII3 467 aa4.96□□□□□ -1.62
SPG11-211ENST00000558561 TMC6Q7Z403 805 aa4.96□□□□□ -1.62
SPG11-211ENST00000558561 RIOX2Q8IUF8 465 aa4.96□□□□□ -1.62
SPG11-211ENST00000558561 NETO2Q8NC67 525 aa4.96□□□□□ -1.62
SPG11-211ENST00000558561 STAG1Q8WVM7 1258 aa4.96□□□□□ -1.62
SPG11-211ENST00000558561 COA7Q96BR5 231 aa4.96□□□□□ -1.62
SPG11-211ENST00000558561 COA3Q9Y2R0 106 aaPredicted RBP4.96□□□□□ -1.62
SPG11-211ENST00000558561 RBM8AQ9Y5S9 174 aaKnown RBP4.96□□□□□ -1.62
SPG11-211ENST00000558561 MKI67P46013 3256 aaKnown RBP4.96□□□□□ -1.62
SPG11-211ENST00000558561 PDE4DIPQ5VU43 2346 aa4.96□□□□□ -1.62
SPG11-211ENST00000558561 PLXNA1Q9UIW2 1896 aa4.96□□□□□ -1.62
SPG11-211ENST00000558561 ASTN1O14525 1302 aa4.96□□□□□ -1.62
SPG11-211ENST00000558561 TCRBV16S1A1N1A0A5B0 115 aa4.95□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms