RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 BMP2KQ9NSY1 1161 aaPredicted RBP13.77□□□□□ -0.21
SHMT2-230ENST00000557427 PCDHB2Q9Y5E7 798 aa13.77□□□□□ -0.21
SHMT2-230ENST00000557427 NOTCH4Q99466 2003 aa13.76□□□□□ -0.21
SHMT2-230ENST00000557427 WDR81Q562E7 1941 aa13.76□□□□□ -0.21
SHMT2-230ENST00000557427 YWHABP31946 246 aaKnown RBP13.76□□□□□ -0.21
SHMT2-230ENST00000557427 LIMK1P53667 647 aa13.76□□□□□ -0.21
SHMT2-230ENST00000557427 SPIRE1Q08AE8 756 aa13.76□□□□□ -0.21
SHMT2-230ENST00000557427 SF3A2Q15428 464 aaKnown RBP13.76□□□□□ -0.21
SHMT2-230ENST00000557427 XKR9Q5GH70 373 aa13.76□□□□□ -0.21
SHMT2-230ENST00000557427 OTUD6AQ7L8S5 288 aa13.76□□□□□ -0.21
SHMT2-230ENST00000557427 RHPN2Q8IUC4 686 aa13.76□□□□□ -0.21
SHMT2-230ENST00000557427 URGCPQ8TCY9 931 aa13.76□□□□□ -0.21
SHMT2-230ENST00000557427 TIGD1Q96MW7 591 aa13.76□□□□□ -0.21
SHMT2-230ENST00000557427 FAM193BQ96PV7 902 aaPredicted RBP13.76□□□□□ -0.21
SHMT2-230ENST00000557427 MTMR9Q96QG7 549 aa13.76□□□□□ -0.21
SHMT2-230ENST00000557427 ZSWIM4Q9H7M6 989 aa13.76□□□□□ -0.21
SHMT2-230ENST00000557427 RSAD1Q9HA92 442 aa13.76□□□□□ -0.21
SHMT2-230ENST00000557427 IGKV6-21A0A0C4DH24 114 aa13.75□□□□□ -0.21
SHMT2-230ENST00000557427 HOXC13P31276 330 aa13.75□□□□□ -0.21
SHMT2-230ENST00000557427 OR1G1P47890 313 aa13.75□□□□□ -0.21
SHMT2-230ENST00000557427 TOB1P50616 345 aaPredicted RBP13.75□□□□□ -0.21
SHMT2-230ENST00000557427 RAB27AP51159 221 aa13.75□□□□□ -0.21
SHMT2-230ENST00000557427 NDUFA8P51970 172 aa13.75□□□□□ -0.21
SHMT2-230ENST00000557427 GAS6Q14393 721 aa13.75□□□□□ -0.21
SHMT2-230ENST00000557427 UBXN11Q5T124 520 aa13.75□□□□□ -0.21
SHMT2-230ENST00000557427 C4orf19Q8IY42 314 aa13.75□□□□□ -0.21
SHMT2-230ENST00000557427 TMEM143Q96AN5 459 aa13.75□□□□□ -0.21
SHMT2-230ENST00000557427 PGBD4Q96DM1 585 aa13.75□□□□□ -0.21
SHMT2-230ENST00000557427 HSD17B14Q9BPX1 270 aa13.75□□□□□ -0.21
SHMT2-230ENST00000557427 GPR62Q9BZJ7 368 aa13.75□□□□□ -0.21
SHMT2-230ENST00000557427 MIOSQ9NXC5 875 aa13.75□□□□□ -0.21
SHMT2-230ENST00000557427 FNIP2Q9P278 1114 aa13.75□□□□□ -0.21
SHMT2-230ENST00000557427 NDRG2Q9UN36 371 aaKnown RBP13.75□□□□□ -0.21
SHMT2-230ENST00000557427 WASF3Q9UPY6 502 aa13.75□□□□□ -0.21
SHMT2-230ENST00000557427 HPSEQ9Y251 543 aa13.75□□□□□ -0.21
SHMT2-230ENST00000557427 F5P12259 2224 aa13.75□□□□□ -0.21
SHMT2-230ENST00000557427 A0A1B0GVL5 298 aa13.74□□□□□ -0.21
SHMT2-230ENST00000557427 SRRM3A6NNA2 597 aaPredicted RBP13.74□□□□□ -0.21
SHMT2-230ENST00000557427 CHURC1-FNTBB4DL54 471 aa13.74□□□□□ -0.21
SHMT2-230ENST00000557427 KCNK5O95279 499 aa13.74□□□□□ -0.21
SHMT2-230ENST00000557427 BMP15O95972 392 aa13.74□□□□□ -0.21
SHMT2-230ENST00000557427 SRGAP2CP0DJJ0 459 aa13.74□□□□□ -0.21
SHMT2-230ENST00000557427 SFPQP23246 707 aaKnown RBP eCLIP13.74□□□□□ -0.21
SHMT2-230ENST00000557427 FNTBP49356 437 aa13.74□□□□□ -0.21
SHMT2-230ENST00000557427 CDC42EP1Q00587 391 aa13.74□□□□□ -0.21
SHMT2-230ENST00000557427 SATB1Q01826 763 aa13.74□□□□□ -0.21
SHMT2-230ENST00000557427 RING1Q06587 406 aa13.74□□□□□ -0.21
SHMT2-230ENST00000557427 DSC1Q08554 894 aa13.74□□□□□ -0.21
SHMT2-230ENST00000557427 CCDC6Q16204 474 aa13.74□□□□□ -0.21
SHMT2-230ENST00000557427 STX1AQ16623 288 aa13.74□□□□□ -0.21
SHMT2-230ENST00000557427 ANO6Q4KMQ2 910 aa13.74□□□□□ -0.21
SHMT2-230ENST00000557427 TTC38Q5R3I4 469 aa13.74□□□□□ -0.21
SHMT2-230ENST00000557427 RESP18Q5W5W9 173 aa13.74□□□□□ -0.21
SHMT2-230ENST00000557427 NPAS3Q8IXF0 933 aa13.74□□□□□ -0.21
SHMT2-230ENST00000557427 FAM160A2Q8N612 972 aaPredicted RBP13.74□□□□□ -0.21
SHMT2-230ENST00000557427 PRPF31Q8WWY3 499 aaKnown RBP13.74□□□□□ -0.21
SHMT2-230ENST00000557427 SLC7A3Q8WY07 619 aa13.74□□□□□ -0.21
SHMT2-230ENST00000557427 NLRP4Q96MN2 994 aa13.74□□□□□ -0.21
SHMT2-230ENST00000557427 JPH2Q9BR39 696 aaPredicted RBP13.74□□□□□ -0.21
SHMT2-230ENST00000557427 KANSL3Q9P2N6 904 aa13.74□□□□□ -0.21
SHMT2-230ENST00000557427 NBEAQ8NFP9 2946 aa13.74□□□□□ -0.21
SHMT2-230ENST00000557427 NRG2O14511 850 aaPredicted RBP13.73□□□□□ -0.21
SHMT2-230ENST00000557427 PFKFB1P16118 471 aa13.73□□□□□ -0.21
SHMT2-230ENST00000557427 SPINK2P20155 84 aa13.73□□□□□ -0.21
SHMT2-230ENST00000557427 MARCKSP29966 332 aaPredicted RBP13.73□□□□□ -0.21
SHMT2-230ENST00000557427 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.73□□□□□ -0.21
SHMT2-230ENST00000557427 KRI1Q8N9T8 703 aaKnown RBP13.73□□□□□ -0.21
SHMT2-230ENST00000557427 PIGOQ8TEQ8 1089 aa13.73□□□□□ -0.21
SHMT2-230ENST00000557427 LSM14BQ9BX40 385 aaKnown RBP13.73□□□□□ -0.21
SHMT2-230ENST00000557427 LMAN1LQ9HAT1 526 aa13.73□□□□□ -0.21
SHMT2-230ENST00000557427 AGPAT5Q9NUQ2 364 aa13.73□□□□□ -0.21
SHMT2-230ENST00000557427 HCFC1R1Q9NWW0 138 aa13.73□□□□□ -0.21
SHMT2-230ENST00000557427 FBXW11Q9UKB1 542 aa13.73□□□□□ -0.21
SHMT2-230ENST00000557427 NOL7Q9UMY1 257 aaKnown RBP13.73□□□□□ -0.21
SHMT2-230ENST00000557427 MRPS17Q9Y2R5 130 aaKnown RBP13.73□□□□□ -0.21
SHMT2-230ENST00000557427 GCN1Q92616 2671 aaKnown RBP13.73□□□□□ -0.21
SHMT2-230ENST00000557427 AKAP13Q12802 2813 aa13.72□□□□□ -0.21
SHMT2-230ENST00000557427 SDK1Q7Z5N4 2213 aa13.72□□□□□ -0.21
SHMT2-230ENST00000557427 CNTNAP2Q9UHC6 1331 aa13.72□□□□□ -0.21
SHMT2-230ENST00000557427 CCL16O15467 120 aa13.72□□□□□ -0.21
SHMT2-230ENST00000557427 FOXD2O60548 495 aaPredicted RBP13.72□□□□□ -0.21
SHMT2-230ENST00000557427 ECI2O75521 394 aa13.72□□□□□ -0.21
SHMT2-230ENST00000557427 ZNF202O95125 648 aa13.72□□□□□ -0.21
SHMT2-230ENST00000557427 TOP3BO95985 862 aaKnown RBP13.72□□□□□ -0.21
SHMT2-230ENST00000557427 HOXA11P31270 313 aaPredicted RBP13.72□□□□□ -0.21
SHMT2-230ENST00000557427 RFC5P40937 340 aa13.72□□□□□ -0.21
SHMT2-230ENST00000557427 CCR3P51677 355 aa13.72□□□□□ -0.21
SHMT2-230ENST00000557427 AASDHQ4L235 1098 aaPredicted RBP13.72□□□□□ -0.21
SHMT2-230ENST00000557427 STPG1Q5TH74 334 aa13.72□□□□□ -0.21
SHMT2-230ENST00000557427 TANGO2Q6ICL3 276 aa13.72□□□□□ -0.21
SHMT2-230ENST00000557427 SHC4Q6S5L8 630 aa13.72□□□□□ -0.21
SHMT2-230ENST00000557427 PRSS55Q6UWB4 352 aaPredicted RBP13.72□□□□□ -0.21
SHMT2-230ENST00000557427 CATSPER4Q7RTX7 472 aa13.72□□□□□ -0.21
SHMT2-230ENST00000557427 ELOA2Q8IYF1 753 aaPredicted RBP13.72□□□□□ -0.21
SHMT2-230ENST00000557427 EXOC8Q8IYI6 725 aa13.72□□□□□ -0.21
SHMT2-230ENST00000557427 SMG8Q8ND04 991 aaKnown RBP13.72□□□□□ -0.21
SHMT2-230ENST00000557427 ING5Q8WYH8 240 aa13.72□□□□□ -0.21
SHMT2-230ENST00000557427 CCDC43Q96MW1 224 aaKnown RBP13.72□□□□□ -0.21
SHMT2-230ENST00000557427 RNF39Q9H2S5 420 aa13.72□□□□□ -0.21
SHMT2-230ENST00000557427 DHX33Q9H6R0 707 aaKnown RBP13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms