RNA–Protein interactions for RNA: ENST00000556956.1

SLIRP-208, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2

Gene SLIRP, Length 450 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-208ENST00000556956 SYF2O95926 243 aaKnown RBP3.19□□□□□ -1.9
SLIRP-208ENST00000556956 ZFYP08048 801 aaPredicted RBP3.19□□□□□ -1.9
SLIRP-208ENST00000556956 GOLGA6DP0CG33 693 aa3.19□□□□□ -1.9
SLIRP-208ENST00000556956 HSPD1P10809 573 aaKnown RBP3.19□□□□□ -1.9
SLIRP-208ENST00000556956 ZNF18P17022 549 aa3.19□□□□□ -1.9
SLIRP-208ENST00000556956 FPR2P25090 351 aa3.19□□□□□ -1.9
SLIRP-208ENST00000556956 MARCKSP29966 332 aaPredicted RBP3.19□□□□□ -1.9
SLIRP-208ENST00000556956 CCT5P48643 541 aa3.19□□□□□ -1.9
SLIRP-208ENST00000556956 KRT83P78385 493 aa3.19□□□□□ -1.9
SLIRP-208ENST00000556956 AKAP17AQ02040 695 aaKnown RBP3.19□□□□□ -1.9
SLIRP-208ENST00000556956 APBA1Q02410 837 aa3.19□□□□□ -1.9
SLIRP-208ENST00000556956 SPAG1Q07617 926 aa3.19□□□□□ -1.9
SLIRP-208ENST00000556956 SSRP1Q08945 709 aaKnown RBP3.19□□□□□ -1.9
SLIRP-208ENST00000556956 RBL2Q08999 1139 aa3.19□□□□□ -1.9
SLIRP-208ENST00000556956 TFCP2Q12800 502 aa3.19□□□□□ -1.9
SLIRP-208ENST00000556956 IFRD2Q12894 506 aaPredicted RBP3.19□□□□□ -1.9
SLIRP-208ENST00000556956 MORC3Q14149 939 aa3.19□□□□□ -1.9
SLIRP-208ENST00000556956 SART3Q15020 963 aaKnown RBP3.19□□□□□ -1.9
SLIRP-208ENST00000556956 PTPAQ15257 358 aa3.19□□□□□ -1.9
SLIRP-208ENST00000556956 SF1Q15637 639 aaKnown RBP3.19□□□□□ -1.9
SLIRP-208ENST00000556956 PRSS53Q2L4Q9 553 aa3.19□□□□□ -1.9
SLIRP-208ENST00000556956 KIZQ2M2Z5 673 aa3.19□□□□□ -1.9
SLIRP-208ENST00000556956 LONRF3Q496Y0 759 aa3.19□□□□□ -1.9
SLIRP-208ENST00000556956 ZC3H12BQ5HYM0 836 aaKnown RBP3.19□□□□□ -1.9
SLIRP-208ENST00000556956 EMC4Q5J8M3 183 aa3.19□□□□□ -1.9
SLIRP-208ENST00000556956 C1orf141Q5JVX7 400 aa3.19□□□□□ -1.9
SLIRP-208ENST00000556956 TTC39AQ5SRH9 613 aa3.19□□□□□ -1.9
SLIRP-208ENST00000556956 OTUD7BQ6GQQ9 843 aa3.19□□□□□ -1.9
SLIRP-208ENST00000556956 MRM1Q6IN84 353 aaKnown RBP3.19□□□□□ -1.9
SLIRP-208ENST00000556956 SHC4Q6S5L8 630 aa3.19□□□□□ -1.9
SLIRP-208ENST00000556956 RAD9BQ6WBX8 426 aa3.19□□□□□ -1.9
SLIRP-208ENST00000556956 CCNI2Q6ZMN8 369 aaPredicted RBP3.19□□□□□ -1.9
SLIRP-208ENST00000556956 CCDC129Q6ZRS4 1044 aa3.19□□□□□ -1.9
SLIRP-208ENST00000556956 ZNF662Q6ZS27 426 aa3.19□□□□□ -1.9
SLIRP-208ENST00000556956 EP400NLQ6ZTU2 488 aa3.19□□□□□ -1.9
SLIRP-208ENST00000556956 STOX1Q6ZVD7 989 aa3.19□□□□□ -1.9
SLIRP-208ENST00000556956 USP53Q70EK8 1073 aa3.19□□□□□ -1.9
SLIRP-208ENST00000556956 RALYLQ86SE5 291 aaKnown RBP3.19□□□□□ -1.9
SLIRP-208ENST00000556956 AMOTL1Q8IY63 956 aa3.19□□□□□ -1.9
SLIRP-208ENST00000556956 IFNL3Q8IZI9 196 aa3.19□□□□□ -1.9
SLIRP-208ENST00000556956 CNPY4Q8N129 248 aa3.19□□□□□ -1.9
SLIRP-208ENST00000556956 LGI4Q8N135 537 aa3.19□□□□□ -1.9
SLIRP-208ENST00000556956 NCOA7Q8NI08 942 aa3.19□□□□□ -1.9
SLIRP-208ENST00000556956 COG1Q8WTW3 980 aa3.19□□□□□ -1.9
SLIRP-208ENST00000556956 PPIL4Q8WUA2 492 aaKnown RBP eCLIP3.19□□□□□ -1.9
SLIRP-208ENST00000556956 LCORQ96JN0 433 aaPredicted RBP3.19□□□□□ -1.9
SLIRP-208ENST00000556956 CABS1Q96KC9 395 aa3.19□□□□□ -1.9
SLIRP-208ENST00000556956 TMEM209Q96SK2 561 aa3.19□□□□□ -1.9
SLIRP-208ENST00000556956 RUFY1Q96T51 708 aa3.19□□□□□ -1.9
SLIRP-208ENST00000556956 SEC62Q99442 399 aaKnown RBP3.19□□□□□ -1.9
SLIRP-208ENST00000556956 MAP3K14Q99558 947 aa3.19□□□□□ -1.9
SLIRP-208ENST00000556956 GORASP1Q9BQQ3 440 aa3.19□□□□□ -1.9
SLIRP-208ENST00000556956 PYM1Q9BRP8 204 aaKnown RBP3.19□□□□□ -1.9
SLIRP-208ENST00000556956 DESI2Q9BSY9 194 aa3.19□□□□□ -1.9
SLIRP-208ENST00000556956 ALG1Q9BT22 464 aa3.19□□□□□ -1.9
SLIRP-208ENST00000556956 LGR4Q9BXB1 951 aa3.19□□□□□ -1.9
SLIRP-208ENST00000556956 CAPS2Q9BXY5 557 aa3.19□□□□□ -1.9
SLIRP-208ENST00000556956 ZNF341Q9BYN7 854 aa3.19□□□□□ -1.9
SLIRP-208ENST00000556956 HAUS4Q9H6D7 363 aa3.19□□□□□ -1.9
SLIRP-208ENST00000556956 MRPL44Q9H9J2 332 aaKnown RBP3.19□□□□□ -1.9
SLIRP-208ENST00000556956 NCOA5Q9HCD5 579 aaKnown RBP3.19□□□□□ -1.9
SLIRP-208ENST00000556956 SLC6A20Q9NP91 592 aa3.19□□□□□ -1.9
SLIRP-208ENST00000556956 DDX21Q9NR30 783 aaKnown RBP eCLIP3.19□□□□□ -1.9
SLIRP-208ENST00000556956 INTS13Q9NVM9 706 aa3.19□□□□□ -1.9
SLIRP-208ENST00000556956 RBM28Q9NW13 759 aaKnown RBP3.19□□□□□ -1.9
SLIRP-208ENST00000556956 PAG1Q9NWQ8 432 aa3.19□□□□□ -1.9
SLIRP-208ENST00000556956 GOLGA6AQ9NYA3 693 aa3.19□□□□□ -1.9
SLIRP-208ENST00000556956 HSPBP1Q9NZL4 362 aa3.19□□□□□ -1.9
SLIRP-208ENST00000556956 TMEFF2Q9UIK5 374 aaPredicted RBP3.19□□□□□ -1.9
SLIRP-208ENST00000556956 GGA2Q9UJY4 613 aa3.19□□□□□ -1.9
SLIRP-208ENST00000556956 HPCAL4Q9UM19 191 aa3.19□□□□□ -1.9
SLIRP-208ENST00000556956 SUFUQ9UMX1 484 aa3.19□□□□□ -1.9
SLIRP-208ENST00000556956 PCDHB4Q9Y5E5 795 aa3.19□□□□□ -1.9
SLIRP-208ENST00000556956 METP08581 1390 aa3.19□□□□□ -1.9
SLIRP-208ENST00000556956 PALLDQ8WX93 1383 aa3.19□□□□□ -1.9
SLIRP-208ENST00000556956 PLEKHG1Q9ULL1 1385 aa3.19□□□□□ -1.9
SLIRP-208ENST00000556956 AK9Q5TCS8 1911 aa3.19□□□□□ -1.9
SLIRP-208ENST00000556956 TECPR2O15040 1411 aa3.19□□□□□ -1.9
SLIRP-208ENST00000556956 ZMYM6O95789 1325 aa3.19□□□□□ -1.9
SLIRP-208ENST00000556956 NEDD4P46934 1319 aa3.19□□□□□ -1.9
SLIRP-208ENST00000556956 WDR17Q8IZU2 1322 aa3.19□□□□□ -1.9
SLIRP-208ENST00000556956 ADAMTSL3P82987 1691 aa3.18□□□□□ -1.9
SLIRP-208ENST00000556956 COL15A1P39059 1388 aa3.18□□□□□ -1.9
SLIRP-208ENST00000556956 CEMIPQ8WUJ3 1361 aa3.18□□□□□ -1.9
SLIRP-208ENST00000556956 GOLGA6L7A0A1B0GV03 622 aa3.18□□□□□ -1.9
SLIRP-208ENST00000556956 GOLGA6BA6NDN3 693 aa3.18□□□□□ -1.9
SLIRP-208ENST00000556956 MROH6A6NGR9 719 aa3.18□□□□□ -1.9
SLIRP-208ENST00000556956 C9orf118A6NHY6 69 aa3.18□□□□□ -1.9
SLIRP-208ENST00000556956 SRRM3A6NNA2 597 aaPredicted RBP3.18□□□□□ -1.9
SLIRP-208ENST00000556956 KIF28PB7ZC32 967 aa3.18□□□□□ -1.9
SLIRP-208ENST00000556956 FAM47E-STBD1D6RA91 191 aa3.18□□□□□ -1.9
SLIRP-208ENST00000556956 H0YHG0 523 aa3.18□□□□□ -1.9
SLIRP-208ENST00000556956 GOLIM4O00461 696 aa3.18□□□□□ -1.9
SLIRP-208ENST00000556956 PSMD14O00487 310 aa3.18□□□□□ -1.9
SLIRP-208ENST00000556956 CHUKO15111 745 aa3.18□□□□□ -1.9
SLIRP-208ENST00000556956 GSTA4O15217 222 aa3.18□□□□□ -1.9
SLIRP-208ENST00000556956 EIF3HO15372 352 aaKnown RBP eCLIP3.18□□□□□ -1.9
SLIRP-208ENST00000556956 RNMTO43148 476 aaKnown RBP3.18□□□□□ -1.9
SLIRP-208ENST00000556956 PRODHO43272 600 aa3.18□□□□□ -1.9
SLIRP-208ENST00000556956 KCNQ3O43525 872 aa3.18□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms