RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-223ENST00000556689 IFT74Q96LB3 600 aa13.92□□□□□ -0.18
SHMT2-223ENST00000556689 IER2Q9BTL4 223 aa13.92□□□□□ -0.18
SHMT2-223ENST00000556689 POLR3CQ9BUI4 534 aaPredicted RBP13.92□□□□□ -0.18
SHMT2-223ENST00000556689 TMEM60Q9H2L4 133 aa13.92□□□□□ -0.18
SHMT2-223ENST00000556689 LMAN1LQ9HAT1 526 aa13.92□□□□□ -0.18
SHMT2-223ENST00000556689 CYP4F11Q9HBI6 524 aa13.92□□□□□ -0.18
SHMT2-223ENST00000556689 MYH15Q9Y2K3 1946 aa13.92□□□□□ -0.18
SHMT2-223ENST00000556689 GPR179Q6PRD1 2367 aa13.91□□□□□ -0.18
SHMT2-223ENST00000556689 COL4A3Q01955 1670 aa13.91□□□□□ -0.18
SHMT2-223ENST00000556689 SMIM28A0A1B0GU29 152 aa13.91□□□□□ -0.18
SHMT2-223ENST00000556689 EDN1P05305 212 aa13.91□□□□□ -0.18
SHMT2-223ENST00000556689 ATF2P15336 505 aa13.91□□□□□ -0.18
SHMT2-223ENST00000556689 RPA1P27694 616 aa13.91□□□□□ -0.18
SHMT2-223ENST00000556689 ARPP19P56211 112 aa13.91□□□□□ -0.18
SHMT2-223ENST00000556689 ROR1Q01973 937 aa13.91□□□□□ -0.18
SHMT2-223ENST00000556689 TRIM29Q14134 588 aa13.91□□□□□ -0.18
SHMT2-223ENST00000556689 GRM2Q14416 872 aa13.91□□□□□ -0.18
SHMT2-223ENST00000556689 PRSS36Q5K4E3 855 aa13.91□□□□□ -0.18
SHMT2-223ENST00000556689 CYP4A22Q5TCH4 519 aa13.91□□□□□ -0.18
SHMT2-223ENST00000556689 NT5DC1Q5TFE4 455 aa13.91□□□□□ -0.18
SHMT2-223ENST00000556689 PDZD4Q76G19 769 aaPredicted RBP13.91□□□□□ -0.18
SHMT2-223ENST00000556689 DIS3L2Q8IYB7 885 aaKnown RBP13.91□□□□□ -0.18
SHMT2-223ENST00000556689 C3orf58Q8NDZ4 430 aa13.91□□□□□ -0.18
SHMT2-223ENST00000556689 ERMNQ8TAM6 284 aa13.91□□□□□ -0.18
SHMT2-223ENST00000556689 TCEAL4Q96EI5 215 aa13.91□□□□□ -0.18
SHMT2-223ENST00000556689 CHRDQ9H2X0 955 aa13.91□□□□□ -0.18
SHMT2-223ENST00000556689 GOLGA2P5Q9HBQ8 144 aa13.91□□□□□ -0.18
SHMT2-223ENST00000556689 ZNF334Q9HCZ1 680 aaPredicted RBP13.91□□□□□ -0.18
SHMT2-223ENST00000556689 PARD6AQ9NPB6 346 aa13.91□□□□□ -0.18
SHMT2-223ENST00000556689 TRPV5Q9NQA5 729 aa13.91□□□□□ -0.18
SHMT2-223ENST00000556689 MIA3Q5JRA6 1907 aa13.9□□□□□ -0.18
SHMT2-223ENST00000556689 WDR27A2RRH5 827 aa13.9□□□□□ -0.18
SHMT2-223ENST00000556689 H7C4K7 107 aa13.9□□□□□ -0.18
SHMT2-223ENST00000556689 K7ERI5 159 aa13.9□□□□□ -0.18
SHMT2-223ENST00000556689 TDGF1P13385 188 aa13.9□□□□□ -0.18
SHMT2-223ENST00000556689 PSMC3P17980 439 aa13.9□□□□□ -0.18
SHMT2-223ENST00000556689 FCARP24071 287 aa13.9□□□□□ -0.18
SHMT2-223ENST00000556689 MCM7P33993 719 aa13.9□□□□□ -0.18
SHMT2-223ENST00000556689 CCR3P51677 355 aa13.9□□□□□ -0.18
SHMT2-223ENST00000556689 YARSP54577 528 aaKnown RBP13.9□□□□□ -0.18
SHMT2-223ENST00000556689 SPEM2Q0P670 501 aa13.9□□□□□ -0.18
SHMT2-223ENST00000556689 IQCEQ6IPM2 695 aa13.9□□□□□ -0.18
SHMT2-223ENST00000556689 ALKAL1Q6UXT8 129 aa13.9□□□□□ -0.18
SHMT2-223ENST00000556689 MAP4K3Q8IVH8 894 aa13.9□□□□□ -0.18
SHMT2-223ENST00000556689 TCEAL8Q8IYN2 117 aa13.9□□□□□ -0.18
SHMT2-223ENST00000556689 ELMOD1Q8N336 334 aa13.9□□□□□ -0.18
SHMT2-223ENST00000556689 NECAB1Q8N987 351 aa13.9□□□□□ -0.18
SHMT2-223ENST00000556689 ZNF512Q96ME7 567 aaPredicted RBP13.9□□□□□ -0.18
SHMT2-223ENST00000556689 ASB16Q96NS5 453 aa13.9□□□□□ -0.18
SHMT2-223ENST00000556689 KIFC3Q9BVG8 833 aa13.9□□□□□ -0.18
SHMT2-223ENST00000556689 CCDC94Q9BW85 323 aaPredicted RBP13.9□□□□□ -0.18
SHMT2-223ENST00000556689 POLD4Q9HCU8 107 aa13.9□□□□□ -0.18
SHMT2-223ENST00000556689 TOPORSQ9NS56 1045 aaPredicted RBP13.9□□□□□ -0.18
SHMT2-223ENST00000556689 SLC38A7Q9NVC3 462 aa13.9□□□□□ -0.18
SHMT2-223ENST00000556689 TNFSF13BQ9Y275 285 aa13.9□□□□□ -0.18
SHMT2-223ENST00000556689 ARID2Q68CP9 1835 aa13.9□□□□□ -0.18
SHMT2-223ENST00000556689 CEP250Q9BV73 2442 aa13.89□□□□□ -0.19
SHMT2-223ENST00000556689 SYN3O14994 580 aa13.89□□□□□ -0.19
SHMT2-223ENST00000556689 SEC24AO95486 1093 aa13.89□□□□□ -0.19
SHMT2-223ENST00000556689 GDI1P31150 447 aa13.89□□□□□ -0.19
SHMT2-223ENST00000556689 GRM5P41594 1212 aa13.89□□□□□ -0.19
SHMT2-223ENST00000556689 CXCL12P48061 93 aa13.89□□□□□ -0.19
SHMT2-223ENST00000556689 MRPL58Q14197 206 aaKnown RBP13.89□□□□□ -0.19
SHMT2-223ENST00000556689 LPAL2Q16609 132 aa13.89□□□□□ -0.19
SHMT2-223ENST00000556689 XKR4Q5GH76 650 aa13.89□□□□□ -0.19
SHMT2-223ENST00000556689 TPGS2Q68CL5 300 aa13.89□□□□□ -0.19
SHMT2-223ENST00000556689 LAIR1Q6GTX8 287 aa13.89□□□□□ -0.19
SHMT2-223ENST00000556689 VITQ6UXI7 678 aa13.89□□□□□ -0.19
SHMT2-223ENST00000556689 KIFAP3Q92845 792 aa13.89□□□□□ -0.19
SHMT2-223ENST00000556689 SMARCD2Q92925 531 aa13.89□□□□□ -0.19
SHMT2-223ENST00000556689 ZSWIM3Q96MP5 696 aa13.89□□□□□ -0.19
SHMT2-223ENST00000556689 NOTCH4Q99466 2003 aa13.88□□□□□ -0.19
SHMT2-223ENST00000556689 NCOR2Q9Y618 2525 aa13.88□□□□□ -0.19
SHMT2-223ENST00000556689 PODXLO00592 558 aa13.88□□□□□ -0.19
SHMT2-223ENST00000556689 NRG2O14511 850 aaPredicted RBP13.88□□□□□ -0.19
SHMT2-223ENST00000556689 ZNF263O14978 683 aa13.88□□□□□ -0.19
SHMT2-223ENST00000556689 LRP3O75074 770 aa13.88□□□□□ -0.19
SHMT2-223ENST00000556689 RETP07949 1114 aa13.88□□□□□ -0.19
SHMT2-223ENST00000556689 MUTP22033 750 aa13.88□□□□□ -0.19
SHMT2-223ENST00000556689 RPL9P32969 192 aaKnown RBP13.88□□□□□ -0.19
SHMT2-223ENST00000556689 CCR2P41597 374 aa13.88□□□□□ -0.19
SHMT2-223ENST00000556689 OSTNP61366 133 aa13.88□□□□□ -0.19
SHMT2-223ENST00000556689 SOX4Q06945 474 aaPredicted RBP13.88□□□□□ -0.19
SHMT2-223ENST00000556689 PRR23BQ6ZRT6 265 aa13.88□□□□□ -0.19
SHMT2-223ENST00000556689 HS6ST3Q8IZP7 471 aa13.88□□□□□ -0.19
SHMT2-223ENST00000556689 DEPDC1BQ8WUY9 529 aa13.88□□□□□ -0.19
SHMT2-223ENST00000556689 ACO2Q99798 780 aaKnown RBP13.88□□□□□ -0.19
SHMT2-223ENST00000556689 FBXL5Q9UKA1 691 aa13.88□□□□□ -0.19
SHMT2-223ENST00000556689 MAFFQ9ULX9 164 aa13.88□□□□□ -0.19
SHMT2-223ENST00000556689 NUB1Q9Y5A7 615 aa13.88□□□□□ -0.19
SHMT2-223ENST00000556689 INSL5Q9Y5Q6 135 aa13.88□□□□□ -0.19
SHMT2-223ENST00000556689 PIAS3Q9Y6X2 628 aa13.88□□□□□ -0.19
SHMT2-223ENST00000556689 ADRB1P08588 477 aa13.87□□□□□ -0.19
SHMT2-223ENST00000556689 CHRNB1P11230 501 aa13.87□□□□□ -0.19
SHMT2-223ENST00000556689 KCNE1P15382 129 aa13.87□□□□□ -0.19
SHMT2-223ENST00000556689 CCNE1P24864 410 aa13.87□□□□□ -0.19
SHMT2-223ENST00000556689 VIPR2P41587 438 aa13.87□□□□□ -0.19
SHMT2-223ENST00000556689 FOSBP53539 338 aa13.87□□□□□ -0.19
SHMT2-223ENST00000556689 MLLT6P55198 1093 aaPredicted RBP13.87□□□□□ -0.19
SHMT2-223ENST00000556689 TWF1Q12792 350 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms