RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 HOXB8P17481 243 aaPredicted RBP14.93□□□□□ -0.02
SHMT2-219ENST00000555563 RPL17P18621 184 aaKnown RBP14.93□□□□□ -0.02
SHMT2-219ENST00000555563 BRCC3P46736 316 aa14.93□□□□□ -0.02
SHMT2-219ENST00000555563 ACOT2P49753 483 aa14.93□□□□□ -0.02
SHMT2-219ENST00000555563 NDUFA8P51970 172 aa14.93□□□□□ -0.02
SHMT2-219ENST00000555563 EHHADHQ08426 723 aa14.93□□□□□ -0.02
SHMT2-219ENST00000555563 CUL4BQ13620 913 aa14.93□□□□□ -0.02
SHMT2-219ENST00000555563 FAM26FQ5R3K3 315 aa14.93□□□□□ -0.02
SHMT2-219ENST00000555563 PDZRN4Q6ZMN7 1036 aaPredicted RBP14.93□□□□□ -0.02
SHMT2-219ENST00000555563 CEP57Q86XR8 500 aa14.93□□□□□ -0.02
SHMT2-219ENST00000555563 GPR65Q8IYL9 337 aa14.93□□□□□ -0.02
SHMT2-219ENST00000555563 SYCP3Q8IZU3 236 aa14.93□□□□□ -0.02
SHMT2-219ENST00000555563 S1PR5Q9H228 398 aa14.93□□□□□ -0.02
SHMT2-219ENST00000555563 GOLPH3LQ9H4A5 285 aa14.93□□□□□ -0.02
SHMT2-219ENST00000555563 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP14.93□□□□□ -0.02
SHMT2-219ENST00000555563 DZANK1Q9NVP4 752 aa14.93□□□□□ -0.02
SHMT2-219ENST00000555563 CDH22Q9UJ99 828 aa14.93□□□□□ -0.02
SHMT2-219ENST00000555563 EIF3DO15371 548 aaKnown RBP eCLIP14.92□□□□□ -0.02
SHMT2-219ENST00000555563 ADRB2P07550 413 aa14.92□□□□□ -0.02
SHMT2-219ENST00000555563 NFICP08651 508 aa14.92□□□□□ -0.02
SHMT2-219ENST00000555563 FGFR3P22607 806 aa14.92□□□□□ -0.02
SHMT2-219ENST00000555563 RPL9P32969 192 aaKnown RBP14.92□□□□□ -0.02
SHMT2-219ENST00000555563 HOXD13P35453 343 aa14.92□□□□□ -0.02
SHMT2-219ENST00000555563 SYKP43405 635 aa14.92□□□□□ -0.02
SHMT2-219ENST00000555563 GUCY2FP51841 1108 aa14.92□□□□□ -0.02
SHMT2-219ENST00000555563 CREMQ03060 361 aa14.92□□□□□ -0.02
SHMT2-219ENST00000555563 ZP2Q05996 745 aa14.92□□□□□ -0.02
SHMT2-219ENST00000555563 POSTNQ15063 836 aa14.92□□□□□ -0.02
SHMT2-219ENST00000555563 JADE1Q6IE81 842 aa14.92□□□□□ -0.02
SHMT2-219ENST00000555563 STXBP4Q6ZWJ1 553 aa14.92□□□□□ -0.02
SHMT2-219ENST00000555563 GLYCTKQ8IVS8 523 aa14.92□□□□□ -0.02
SHMT2-219ENST00000555563 C12orf76Q8N812 135 aaPredicted RBP14.92□□□□□ -0.02
SHMT2-219ENST00000555563 FSIP1Q8NA03 581 aa14.92□□□□□ -0.02
SHMT2-219ENST00000555563 PIK3R5Q8WYR1 880 aa14.92□□□□□ -0.02
SHMT2-219ENST00000555563 SUSD6Q92537 303 aa14.92□□□□□ -0.02
SHMT2-219ENST00000555563 FAM212AQ96EL1 285 aa14.92□□□□□ -0.02
SHMT2-219ENST00000555563 SAAL1Q96ER3 474 aa14.92□□□□□ -0.02
SHMT2-219ENST00000555563 PAGE5Q96GU1 130 aa14.92□□□□□ -0.02
SHMT2-219ENST00000555563 FBXL18Q96ME1 805 aa14.92□□□□□ -0.02
SHMT2-219ENST00000555563 CBWD1Q9BRT8 395 aa14.92□□□□□ -0.02
SHMT2-219ENST00000555563 TMEM206Q9H813 350 aa14.92□□□□□ -0.02
SHMT2-219ENST00000555563 CD320Q9NPF0 282 aa14.92□□□□□ -0.02
SHMT2-219ENST00000555563 PRKAG3Q9UGI9 489 aa14.92□□□□□ -0.02
SHMT2-219ENST00000555563 USP25Q9UHP3 1055 aa14.92□□□□□ -0.02
SHMT2-219ENST00000555563 UBQLN1Q9UMX0 589 aaKnown RBP14.92□□□□□ -0.02
SHMT2-219ENST00000555563 GLUD1P00367 558 aa14.91□□□□□ -0.02
SHMT2-219ENST00000555563 TKTP29401 623 aaKnown RBP14.91□□□□□ -0.02
SHMT2-219ENST00000555563 LRPAP1P30533 357 aa14.91□□□□□ -0.02
SHMT2-219ENST00000555563 ZBTB6Q15916 424 aa14.91□□□□□ -0.02
SHMT2-219ENST00000555563 PSMD5Q16401 504 aa14.91□□□□□ -0.02
SHMT2-219ENST00000555563 RARS2Q5T160 578 aaKnown RBP14.91□□□□□ -0.02
SHMT2-219ENST00000555563 KANK3Q6NY19 840 aa14.91□□□□□ -0.02
SHMT2-219ENST00000555563 CRELD2Q6UXH1 353 aaPredicted RBP14.91□□□□□ -0.02
SHMT2-219ENST00000555563 EPM2AIP1Q7L775 607 aaPredicted RBP14.91□□□□□ -0.02
SHMT2-219ENST00000555563 ADHFE1Q8IWW8 467 aa14.91□□□□□ -0.02
SHMT2-219ENST00000555563 CD302Q8IX05 232 aa14.91□□□□□ -0.02
SHMT2-219ENST00000555563 ZSWIM2Q8NEG5 633 aa14.91□□□□□ -0.02
SHMT2-219ENST00000555563 LNX1Q8TBB1 728 aaPredicted RBP14.91□□□□□ -0.02
SHMT2-219ENST00000555563 FEZF2Q8TBJ5 459 aa14.91□□□□□ -0.02
SHMT2-219ENST00000555563 FAM213AQ9BRX8 229 aa14.91□□□□□ -0.02
SHMT2-219ENST00000555563 SFXN1Q9H9B4 322 aa14.91□□□□□ -0.02
SHMT2-219ENST00000555563 MAN1C1Q9NR34 630 aa14.91□□□□□ -0.02
SHMT2-219ENST00000555563 FNIP2Q9P278 1114 aa14.91□□□□□ -0.02
SHMT2-219ENST00000555563 NUB1Q9Y5A7 615 aa14.91□□□□□ -0.02
SHMT2-219ENST00000555563 GTF3C5Q9Y5Q8 519 aaPredicted RBP14.91□□□□□ -0.02
SHMT2-219ENST00000555563 UBE4BO95155 1302 aa14.91□□□□□ -0.02
SHMT2-219ENST00000555563 PVALEFA0A1B0GWK0 134 aa14.9□□□□□ -0.02
SHMT2-219ENST00000555563 TRAPPC3O43617 180 aa14.9□□□□□ -0.02
SHMT2-219ENST00000555563 KLRC4O43908 158 aa14.9□□□□□ -0.02
SHMT2-219ENST00000555563 CYP3A5P20815 502 aa14.9□□□□□ -0.02
SHMT2-219ENST00000555563 GARTP22102 1010 aa14.9□□□□□ -0.02
SHMT2-219ENST00000555563 MCM4P33991 863 aa14.9□□□□□ -0.02
SHMT2-219ENST00000555563 WNT7BP56706 349 aa14.9□□□□□ -0.02
SHMT2-219ENST00000555563 CBX2Q14781 532 aaPredicted RBP14.9□□□□□ -0.02
SHMT2-219ENST00000555563 TMEM132DQ14C87 1099 aa14.9□□□□□ -0.02
SHMT2-219ENST00000555563 ARMCX5Q6P1M9 558 aa14.9□□□□□ -0.02
SHMT2-219ENST00000555563 PALB2Q86YC2 1186 aa14.9□□□□□ -0.02
SHMT2-219ENST00000555563 GJD3Q8N144 294 aa14.9□□□□□ -0.02
SHMT2-219ENST00000555563 SCFD1Q8WVM8 642 aa14.9□□□□□ -0.02
SHMT2-219ENST00000555563 TSPAN18Q96SJ8 248 aa14.9□□□□□ -0.02
SHMT2-219ENST00000555563 ADAM7Q9H2U9 754 aa14.9□□□□□ -0.02
SHMT2-219ENST00000555563 EPHX3Q9H6B9 360 aa14.9□□□□□ -0.02
SHMT2-219ENST00000555563 GOLGA8IPA6NC78 632 aa14.89□□□□□ -0.03
SHMT2-219ENST00000555563 SPDYE4A6NLX3 237 aa14.89□□□□□ -0.03
SHMT2-219ENST00000555563 GOLGA8JA6NMD2 632 aa14.89□□□□□ -0.03
SHMT2-219ENST00000555563 ADAM12O43184 909 aa14.89□□□□□ -0.03
SHMT2-219ENST00000555563 TGM5O43548 720 aa14.89□□□□□ -0.03
SHMT2-219ENST00000555563 XPOTO43592 962 aaKnown RBP14.89□□□□□ -0.03
SHMT2-219ENST00000555563 WEE2P0C1S8 567 aa14.89□□□□□ -0.03
SHMT2-219ENST00000555563 PRR29P0C7W0 189 aa14.89□□□□□ -0.03
SHMT2-219ENST00000555563 SSTR3P32745 418 aaPredicted RBP14.89□□□□□ -0.03
SHMT2-219ENST00000555563 POU5F1Q01860 360 aaKnown RBP14.89□□□□□ -0.03
SHMT2-219ENST00000555563 ITIH3Q06033 890 aa14.89□□□□□ -0.03
SHMT2-219ENST00000555563 SPATA1Q5VX52 437 aa14.89□□□□□ -0.03
SHMT2-219ENST00000555563 PDXDC1Q6P996 788 aa14.89□□□□□ -0.03
SHMT2-219ENST00000555563 BRSK2Q8IWQ3 736 aa14.89□□□□□ -0.03
SHMT2-219ENST00000555563 NELFCDQ8IXH7 590 aa14.89□□□□□ -0.03
SHMT2-219ENST00000555563 EFCAB13Q8IY85 973 aa14.89□□□□□ -0.03
SHMT2-219ENST00000555563 BEST2Q8NFU1 509 aa14.89□□□□□ -0.03
SHMT2-219ENST00000555563 POP1Q99575 1024 aaKnown RBP14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms