RNA–Protein interactions for RNA: ENST00000553855.5

PSEN1-209, Transcript of presenilin 1, humanhuman

TSL 1 (best)

Gene PSEN1, Length 1,254 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSEN1-209ENST00000553855 TMEM206Q9H813 350 aa9.1□□□□□ -0.95
PSEN1-209ENST00000553855 SLC38A7Q9NVC3 462 aa9.1□□□□□ -0.95
PSEN1-209ENST00000553855 CDV3Q9UKY7 258 aaKnown RBP9.1□□□□□ -0.95
PSEN1-209ENST00000553855 FAM50BQ9Y247 325 aa9.1□□□□□ -0.95
PSEN1-209ENST00000553855 SSX2IPQ9Y2D8 614 aa9.1□□□□□ -0.95
PSEN1-209ENST00000553855 USP20Q9Y2K6 914 aa9.1□□□□□ -0.95
PSEN1-209ENST00000553855 ZDHHC9Q9Y397 364 aa9.1□□□□□ -0.95
PSEN1-209ENST00000553855 PCDHGA11Q9Y5H2 935 aa9.1□□□□□ -0.95
PSEN1-209ENST00000553855 A0A1W2PQ27 194 aa9.09□□□□□ -0.95
PSEN1-209ENST00000553855 A0A1W2PQ64 194 aa9.09□□□□□ -0.95
PSEN1-209ENST00000553855 A0A1W2PQD8 194 aa9.09□□□□□ -0.95
PSEN1-209ENST00000553855 MEIS3P2A8K0S8 358 aa9.09□□□□□ -0.95
PSEN1-209ENST00000553855 NRP1O14786 923 aa9.09□□□□□ -0.95
PSEN1-209ENST00000553855 INPPL1O15357 1258 aa9.09□□□□□ -0.95
PSEN1-209ENST00000553855 S1PR4O95977 384 aa9.09□□□□□ -0.95
PSEN1-209ENST00000553855 SLFN14P0C7P3 912 aa9.09□□□□□ -0.95
PSEN1-209ENST00000553855 PFKFB1P16118 471 aa9.09□□□□□ -0.95
PSEN1-209ENST00000553855 NMT1P30419 496 aaKnown RBP9.09□□□□□ -0.95
PSEN1-209ENST00000553855 PBX3P40426 434 aa9.09□□□□□ -0.95
PSEN1-209ENST00000553855 AFMP43652 599 aa9.09□□□□□ -0.95
PSEN1-209ENST00000553855 SLC11A1P49279 550 aa9.09□□□□□ -0.95
PSEN1-209ENST00000553855 MRPS5P82675 430 aaKnown RBP9.09□□□□□ -0.95
PSEN1-209ENST00000553855 GTF2BQ00403 316 aa9.09□□□□□ -0.95
PSEN1-209ENST00000553855 ELAVL2Q12926 359 aaKnown RBP9.09□□□□□ -0.95
PSEN1-209ENST00000553855 USP4Q13107 963 aa9.09□□□□□ -0.95
PSEN1-209ENST00000553855 TUSC3Q13454 348 aa9.09□□□□□ -0.95
PSEN1-209ENST00000553855 TCEAL5Q5H9L2 206 aa9.09□□□□□ -0.95
PSEN1-209ENST00000553855 PLPP4Q5VZY2 271 aa9.09□□□□□ -0.95
PSEN1-209ENST00000553855 KANK3Q6NY19 840 aa9.09□□□□□ -0.95
PSEN1-209ENST00000553855 ELMSAN1Q6PJG2 1045 aa9.09□□□□□ -0.95
PSEN1-209ENST00000553855 ZNF720Q7Z2F6 126 aa9.09□□□□□ -0.95
PSEN1-209ENST00000553855 DDX53Q86TM3 631 aaKnown RBP9.09□□□□□ -0.95
PSEN1-209ENST00000553855 MAP4K3Q8IVH8 894 aa9.09□□□□□ -0.95
PSEN1-209ENST00000553855 FSIP1Q8NA03 581 aa9.09□□□□□ -0.95
PSEN1-209ENST00000553855 TPCN2Q8NHX9 752 aa9.09□□□□□ -0.95
PSEN1-209ENST00000553855 ATXN2LQ8WWM7 1075 aaKnown RBP9.09□□□□□ -0.95
PSEN1-209ENST00000553855 STAMQ92783 540 aa9.09□□□□□ -0.95
PSEN1-209ENST00000553855 IGSF21Q96ID5 467 aa9.09□□□□□ -0.95
PSEN1-209ENST00000553855 ZFP42Q96MM3 310 aa9.09□□□□□ -0.95
PSEN1-209ENST00000553855 UROC1Q96N76 676 aa9.09□□□□□ -0.95
PSEN1-209ENST00000553855 CDCA3Q99618 268 aaPredicted RBP9.09□□□□□ -0.95
PSEN1-209ENST00000553855 TCF25Q9BQ70 676 aa9.09□□□□□ -0.95
PSEN1-209ENST00000553855 MSTO1Q9BUK6 570 aa9.09□□□□□ -0.95
PSEN1-209ENST00000553855 EMILIN2Q9BXX0 1053 aa9.09□□□□□ -0.95
PSEN1-209ENST00000553855 TRIM9Q9C026 710 aa9.09□□□□□ -0.95
PSEN1-209ENST00000553855 ST6GALNAC4Q9H4F1 302 aa9.09□□□□□ -0.95
PSEN1-209ENST00000553855 TLE6Q9H808 572 aa9.09□□□□□ -0.95
PSEN1-209ENST00000553855 RPF1Q9H9Y2 349 aaKnown RBP9.09□□□□□ -0.95
PSEN1-209ENST00000553855 OLFML3Q9NRN5 406 aa9.09□□□□□ -0.95
PSEN1-209ENST00000553855 KBTBD4Q9NVX7 518 aa9.09□□□□□ -0.95
PSEN1-209ENST00000553855 CHMP5Q9NZZ3 219 aa9.09□□□□□ -0.95
PSEN1-209ENST00000553855 TBC1D7Q9P0N9 293 aa9.09□□□□□ -0.95
PSEN1-209ENST00000553855 HOOK1Q9UJC3 728 aaKnown RBP9.09□□□□□ -0.95
PSEN1-209ENST00000553855 PRG3Q9Y2Y8 225 aaPredicted RBP9.09□□□□□ -0.95
PSEN1-209ENST00000553855 PCDHB11Q9Y5F2 797 aa9.09□□□□□ -0.95
PSEN1-209ENST00000553855 LAMA3Q16787 3333 aa9.09□□□□□ -0.95
PSEN1-209ENST00000553855 PTPRSQ13332 1948 aa9.09□□□□□ -0.95
PSEN1-209ENST00000553855 UNC80Q8N2C7 3258 aa9.09□□□□□ -0.95
PSEN1-209ENST00000553855 A0A087X0B3 334 aa9.08□□□□□ -0.96
PSEN1-209ENST00000553855 A0A1B0GVL5 298 aa9.08□□□□□ -0.96
PSEN1-209ENST00000553855 OGTO15294 1046 aa9.08□□□□□ -0.96
PSEN1-209ENST00000553855 TRAPPC3O43617 180 aa9.08□□□□□ -0.96
PSEN1-209ENST00000553855 DDHD2O94830 711 aa9.08□□□□□ -0.96
PSEN1-209ENST00000553855 KIF20AO95235 890 aa9.08□□□□□ -0.96
PSEN1-209ENST00000553855 CXCL14O95715 111 aa9.08□□□□□ -0.96
PSEN1-209ENST00000553855 LDHAP00338 332 aaKnown RBP9.08□□□□□ -0.96
PSEN1-209ENST00000553855 MYL1P05976 194 aa9.08□□□□□ -0.96
PSEN1-209ENST00000553855 URODP06132 367 aa9.08□□□□□ -0.96
PSEN1-209ENST00000553855 CLTAP09496 248 aa9.08□□□□□ -0.96
PSEN1-209ENST00000553855 LINC00271P0C7V0 271 aa9.08□□□□□ -0.96
PSEN1-209ENST00000553855 SCNN1AP37088 669 aa9.08□□□□□ -0.96
PSEN1-209ENST00000553855 NDUFV1P49821 464 aa9.08□□□□□ -0.96
PSEN1-209ENST00000553855 PPP2R3AQ06190 1150 aa9.08□□□□□ -0.96
PSEN1-209ENST00000553855 MCL1Q07820 350 aa9.08□□□□□ -0.96
PSEN1-209ENST00000553855 COASYQ13057 564 aa9.08□□□□□ -0.96
PSEN1-209ENST00000553855 OCLNQ16625 522 aa9.08□□□□□ -0.96
PSEN1-209ENST00000553855 L1TD1Q5T7N2 865 aaKnown RBP9.08□□□□□ -0.96
PSEN1-209ENST00000553855 DNAJC14Q6Y2X3 702 aaPredicted RBP9.08□□□□□ -0.96
PSEN1-209ENST00000553855 UNC13DQ70J99 1090 aa9.08□□□□□ -0.96
PSEN1-209ENST00000553855 TAS1R3Q7RTX0 852 aa9.08□□□□□ -0.96
PSEN1-209ENST00000553855 RBM23Q86U06 439 aaKnown RBP9.08□□□□□ -0.96
PSEN1-209ENST00000553855 ZNF280BQ86YH2 543 aa9.08□□□□□ -0.96
PSEN1-209ENST00000553855 CD302Q8IX05 232 aa9.08□□□□□ -0.96
PSEN1-209ENST00000553855 COLGALT2Q8IYK4 626 aa9.08□□□□□ -0.96
PSEN1-209ENST00000553855 VPS52Q8N1B4 723 aa9.08□□□□□ -0.96
PSEN1-209ENST00000553855 LRRC15Q8TF66 581 aa9.08□□□□□ -0.96
PSEN1-209ENST00000553855 POMGNT1Q8WZA1 660 aa9.08□□□□□ -0.96
PSEN1-209ENST00000553855 KCNN1Q92952 543 aa9.08□□□□□ -0.96
PSEN1-209ENST00000553855 DNAJC19Q96DA6 116 aa9.08□□□□□ -0.96
PSEN1-209ENST00000553855 PABPC5Q96DU9 382 aaKnown RBP9.08□□□□□ -0.96
PSEN1-209ENST00000553855 C7orf25Q9BPX7 421 aa9.08□□□□□ -0.96
PSEN1-209ENST00000553855 PLEKHA5Q9HAU0 1116 aa9.08□□□□□ -0.96
PSEN1-209ENST00000553855 PTPRHQ9HD43 1115 aa9.08□□□□□ -0.96
PSEN1-209ENST00000553855 MRPL17Q9NRX2 175 aaKnown RBP9.08□□□□□ -0.96
PSEN1-209ENST00000553855 EXOC1Q9NV70 894 aa9.08□□□□□ -0.96
PSEN1-209ENST00000553855 CLDND1Q9NY35 253 aa9.08□□□□□ -0.96
PSEN1-209ENST00000553855 DNAJB4Q9UDY4 337 aa9.08□□□□□ -0.96
PSEN1-209ENST00000553855 SERTAD1Q9UHV2 236 aa9.08□□□□□ -0.96
PSEN1-209ENST00000553855 R3HCC1Q9Y3T6 440 aaKnown RBP9.08□□□□□ -0.96
PSEN1-209ENST00000553855 SF3B1O75533 1304 aaKnown RBP eCLIP9.07□□□□□ -0.963e-6■■■■■ 80.4
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms