RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 PMS2P1A4D2B8 440 aa5.2□□□□□ -1.58
VPS29-205ENST00000548539 FAM227AF5H4B4 570 aa5.2□□□□□ -1.58
VPS29-205ENST00000548539 PMM2O15305 246 aa5.2□□□□□ -1.58
VPS29-205ENST00000548539 PHF2O75151 1096 aa5.2□□□□□ -1.58
VPS29-205ENST00000548539 TOX4O94842 621 aa5.2□□□□□ -1.58
VPS29-205ENST00000548539 ENDOD1O94919 500 aa5.2□□□□□ -1.58
VPS29-205ENST00000548539 ZBED1O96006 694 aa5.2□□□□□ -1.58
VPS29-205ENST00000548539 SESN2P58004 480 aaPredicted RBP5.2□□□□□ -1.58
VPS29-205ENST00000548539 KRTAP10-11P60412 298 aa5.2□□□□□ -1.58
VPS29-205ENST00000548539 ATP2C1P98194 919 aaPredicted RBP5.2□□□□□ -1.58
VPS29-205ENST00000548539 TARDBPQ13148 414 aaKnown RBP eCLIP5.2□□□□□ -1.58
VPS29-205ENST00000548539 KIAA0753Q2KHM9 967 aa5.2□□□□□ -1.58
VPS29-205ENST00000548539 PPP4R3AQ6IN85 833 aa5.2□□□□□ -1.58
VPS29-205ENST00000548539 DAAM2Q86T65 1068 aa5.2□□□□□ -1.58
VPS29-205ENST00000548539 RSPH3Q86UC2 560 aa5.2□□□□□ -1.58
VPS29-205ENST00000548539 PQLC1Q8N2U9 271 aa5.2□□□□□ -1.58
VPS29-205ENST00000548539 REPS2Q8NFH8 660 aa5.2□□□□□ -1.58
VPS29-205ENST00000548539 ZNF480Q8WV37 535 aa5.2□□□□□ -1.58
VPS29-205ENST00000548539 STON2Q8WXE9 905 aa5.2□□□□□ -1.58
VPS29-205ENST00000548539 TMX3Q96JJ7 454 aa5.2□□□□□ -1.58
VPS29-205ENST00000548539 NT5C1BQ96P26 610 aa5.2□□□□□ -1.58
VPS29-205ENST00000548539 PSMD1Q99460 953 aa5.2□□□□□ -1.58
VPS29-205ENST00000548539 VRK1Q99986 396 aaPredicted RBP5.2□□□□□ -1.58
VPS29-205ENST00000548539 APOL5Q9BWW9 433 aa5.2□□□□□ -1.58
VPS29-205ENST00000548539 C14orf93Q9H972 538 aaKnown RBP5.2□□□□□ -1.58
VPS29-205ENST00000548539 AGO3Q9H9G7 860 aaKnown RBP5.2□□□□□ -1.58
VPS29-205ENST00000548539 DDX21Q9NR30 783 aaKnown RBP eCLIP5.2□□□□□ -1.58
VPS29-205ENST00000548539 NCDNQ9UBB6 729 aa5.2□□□□□ -1.58
VPS29-205ENST00000548539 NIPSNAP3AQ9UFN0 247 aaPredicted RBP5.2□□□□□ -1.58
VPS29-205ENST00000548539 STAP2Q9UGK3 403 aa5.2□□□□□ -1.58
VPS29-205ENST00000548539 STXBP5LQ9Y2K9 1186 aa5.2□□□□□ -1.58
VPS29-205ENST00000548539 CTDP1Q9Y5B0 961 aaPredicted RBP5.2□□□□□ -1.58
VPS29-205ENST00000548539 TPD52L2O43399 206 aaKnown RBP5.19□□□□□ -1.58
VPS29-205ENST00000548539 ITGA10O75578 1167 aa5.19□□□□□ -1.58
VPS29-205ENST00000548539 IFIT2P09913 472 aaKnown RBP5.19□□□□□ -1.58
VPS29-205ENST00000548539 SREBF1P36956 1147 aa5.19□□□□□ -1.58
VPS29-205ENST00000548539 KIR2DL3P43628 341 aa5.19□□□□□ -1.58
VPS29-205ENST00000548539 SCNN1GP51170 649 aa5.19□□□□□ -1.58
VPS29-205ENST00000548539 C21orf58P58505 322 aa5.19□□□□□ -1.58
VPS29-205ENST00000548539 BPIFB4P59827 614 aa5.19□□□□□ -1.58
VPS29-205ENST00000548539 CDC42EP1Q00587 391 aa5.19□□□□□ -1.58
VPS29-205ENST00000548539 HGFACQ04756 655 aa5.19□□□□□ -1.58
VPS29-205ENST00000548539 PICALMQ13492 652 aa5.19□□□□□ -1.58
VPS29-205ENST00000548539 KHDC1Q4VXA5 237 aaKnown RBP5.19□□□□□ -1.58
VPS29-205ENST00000548539 C19orf54Q5BKX5 351 aa5.19□□□□□ -1.58
VPS29-205ENST00000548539 KRT40Q6A162 431 aa5.19□□□□□ -1.58
VPS29-205ENST00000548539 SRGAP1Q7Z6B7 1085 aa5.19□□□□□ -1.58
VPS29-205ENST00000548539 MRGPREQ86SM8 312 aa5.19□□□□□ -1.58
VPS29-205ENST00000548539 TTC7BQ86TV6 843 aa5.19□□□□□ -1.58
VPS29-205ENST00000548539 ZGPATQ8N5A5 531 aaKnown RBP5.19□□□□□ -1.58
VPS29-205ENST00000548539 SH2D3CQ8N5H7 860 aa5.19□□□□□ -1.58
VPS29-205ENST00000548539 LILRA3Q8N6C8 439 aaPredicted RBP5.19□□□□□ -1.58
VPS29-205ENST00000548539 ANKRD53Q8N9V6 530 aa5.19□□□□□ -1.58
VPS29-205ENST00000548539 SVIPQ8NHG7 77 aa5.19□□□□□ -1.58
VPS29-205ENST00000548539 KLHDC4Q8TBB5 520 aa5.19□□□□□ -1.58
VPS29-205ENST00000548539 NSUN6Q8TEA1 469 aaKnown RBP5.19□□□□□ -1.58
VPS29-205ENST00000548539 RPL10LQ96L21 214 aaKnown RBP5.19□□□□□ -1.58
VPS29-205ENST00000548539 SENP6Q9GZR1 1112 aaPredicted RBP5.19□□□□□ -1.58
VPS29-205ENST00000548539 TMEM60Q9H2L4 133 aa5.19□□□□□ -1.58
VPS29-205ENST00000548539 BHMT2Q9H2M3 363 aa5.19□□□□□ -1.58
VPS29-205ENST00000548539 MANSC1Q9H8J5 431 aa5.19□□□□□ -1.58
VPS29-205ENST00000548539 GPRC5DQ9NZD1 345 aa5.19□□□□□ -1.58
VPS29-205ENST00000548539 TRPS1Q9UHF7 1281 aa5.19□□□□□ -1.58
VPS29-205ENST00000548539 SH3BP1Q9Y3L3 701 aa5.19□□□□□ -1.58
VPS29-205ENST00000548539 PCDHA3Q9Y5H8 950 aa5.19□□□□□ -1.58
VPS29-205ENST00000548539 KRTAP29-1A8MX34 341 aaPredicted RBP5.18□□□□□ -1.58
VPS29-205ENST00000548539 PQBP1O60828 265 aaKnown RBP5.18□□□□□ -1.58
VPS29-205ENST00000548539 AMY1AP04745 511 aa5.18□□□□□ -1.58
VPS29-205ENST00000548539 RPLP2P05387 115 aaKnown RBP5.18□□□□□ -1.58
VPS29-205ENST00000548539 PTPN7P35236 360 aa5.18□□□□□ -1.58
VPS29-205ENST00000548539 DUSP2Q05923 314 aa5.18□□□□□ -1.58
VPS29-205ENST00000548539 NOGQ13253 232 aa5.18□□□□□ -1.58
VPS29-205ENST00000548539 OS9Q13438 667 aaPredicted RBP5.18□□□□□ -1.58
VPS29-205ENST00000548539 CNN3Q15417 329 aaKnown RBP5.18□□□□□ -1.58
VPS29-205ENST00000548539 ANO6Q4KMQ2 910 aa5.18□□□□□ -1.58
VPS29-205ENST00000548539 SWSAP1Q6NVH7 229 aa5.18□□□□□ -1.58
VPS29-205ENST00000548539 SYCE2Q6PIF2 218 aa5.18□□□□□ -1.58
VPS29-205ENST00000548539 PRIMA1Q86XR5 153 aa5.18□□□□□ -1.58
VPS29-205ENST00000548539 GSPT2Q8IYD1 628 aaKnown RBP5.18□□□□□ -1.58
VPS29-205ENST00000548539 KIAA0319LQ8IZA0 1049 aa5.18□□□□□ -1.58
VPS29-205ENST00000548539 OR7D4Q8NG98 312 aa5.18□□□□□ -1.58
VPS29-205ENST00000548539 PLBD2Q8NHP8 589 aa5.18□□□□□ -1.58
VPS29-205ENST00000548539 MDM1Q8TC05 714 aa5.18□□□□□ -1.58
VPS29-205ENST00000548539 SLC7A6OSQ96CW6 309 aaPredicted RBP5.18□□□□□ -1.58
VPS29-205ENST00000548539 SLC39A13Q96H72 371 aa5.18□□□□□ -1.58
VPS29-205ENST00000548539 DMRTA2Q96SC8 542 aa5.18□□□□□ -1.58
VPS29-205ENST00000548539 LANCL2Q9NS86 450 aa5.18□□□□□ -1.58
VPS29-205ENST00000548539 AJAP1Q9UKB5 411 aaPredicted RBP5.18□□□□□ -1.58
VPS29-205ENST00000548539 PACSIN3Q9UKS6 424 aa5.18□□□□□ -1.58
VPS29-205ENST00000548539 RUVBL1Q9Y265 456 aaKnown RBP5.18□□□□□ -1.58
VPS29-205ENST00000548539 MYBBP1AQ9BQG0 1328 aaKnown RBP5.18□□□□□ -1.58
VPS29-205ENST00000548539 CFAP69A5D8W1 941 aa5.17□□□□□ -1.58
VPS29-205ENST00000548539 CAPN8A6NHC0 703 aa5.17□□□□□ -1.58
VPS29-205ENST00000548539 H3BUI4 141 aa5.17□□□□□ -1.58
VPS29-205ENST00000548539 WNT10BO00744 389 aa5.17□□□□□ -1.58
VPS29-205ENST00000548539 SGTAO43765 313 aa5.17□□□□□ -1.58
VPS29-205ENST00000548539 PHKG2P15735 406 aa5.17□□□□□ -1.58
VPS29-205ENST00000548539 FPR1P21462 350 aa5.17□□□□□ -1.58
VPS29-205ENST00000548539 CASRP41180 1078 aa5.17□□□□□ -1.58
VPS29-205ENST00000548539 MAN2A2P49641 1150 aa5.17□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms