RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 ATG4AQ8WYN0 398 aa11.86□□□□□ -0.51
CUX1-212ENST00000547394 ZSWIM1Q9BR11 485 aa11.86□□□□□ -0.51
CUX1-212ENST00000547394 FDXACB1Q9BRP7 624 aaPredicted RBP11.86□□□□□ -0.51
CUX1-212ENST00000547394 HERPUD2Q9BSE4 406 aa11.86□□□□□ -0.51
CUX1-212ENST00000547394 HEMGNQ9BXL5 484 aa11.86□□□□□ -0.51
CUX1-212ENST00000547394 CXCL16Q9H2A7 254 aa11.86□□□□□ -0.51
CUX1-212ENST00000547394 AKT3Q9Y243 479 aa11.86□□□□□ -0.51
CUX1-212ENST00000547394 STYXL1Q9Y6J8 313 aa11.86□□□□□ -0.51
CUX1-212ENST00000547394 ZNFX1Q9P2E3 1918 aaKnown RBP11.86□□□□□ -0.51
CUX1-212ENST00000547394 ADCY6O43306 1168 aa11.86□□□□□ -0.51
CUX1-212ENST00000547394 FAM189A1O60320 539 aa11.86□□□□□ -0.51
CUX1-212ENST00000547394 TCF4P15884 667 aa11.86□□□□□ -0.51
CUX1-212ENST00000547394 SCP2P22307 547 aa11.86□□□□□ -0.51
CUX1-212ENST00000547394 ACAD10Q6JQN1 1059 aa11.86□□□□□ -0.51
CUX1-212ENST00000547394 GPRC5AQ8NFJ5 357 aa11.86□□□□□ -0.51
CUX1-212ENST00000547394 UHMK1Q8TAS1 419 aaKnown RBP11.86□□□□□ -0.51
CUX1-212ENST00000547394 AFAP1L1Q8TED9 768 aa11.86□□□□□ -0.51
CUX1-212ENST00000547394 C1orf54Q8WWF1 131 aa11.86□□□□□ -0.51
CUX1-212ENST00000547394 SCLT1Q96NL6 688 aa11.86□□□□□ -0.51
CUX1-212ENST00000547394 MRPL4Q9BYD3 311 aaKnown RBP11.86□□□□□ -0.51
CUX1-212ENST00000547394 SNX24Q9Y343 169 aa11.86□□□□□ -0.51
CUX1-212ENST00000547394 TOM1L1O75674 476 aa11.85□□□□□ -0.51
CUX1-212ENST00000547394 CLTAP09496 248 aa11.85□□□□□ -0.51
CUX1-212ENST00000547394 GCNT1Q02742 428 aa11.85□□□□□ -0.51
CUX1-212ENST00000547394 ARHGAP1Q07960 439 aa11.85□□□□□ -0.51
CUX1-212ENST00000547394 PAK2Q13177 524 aa11.85□□□□□ -0.51
CUX1-212ENST00000547394 TTLL4Q14679 1199 aa11.85□□□□□ -0.51
CUX1-212ENST00000547394 TTC27Q6P3X3 843 aa11.85□□□□□ -0.51
CUX1-212ENST00000547394 RASGEF1CQ8N431 466 aa11.85□□□□□ -0.51
CUX1-212ENST00000547394 CGRRF1Q99675 332 aa11.85□□□□□ -0.51
CUX1-212ENST00000547394 CCDC113Q9H0I3 377 aa11.85□□□□□ -0.51
CUX1-212ENST00000547394 TJP2Q9UDY2 1190 aa11.85□□□□□ -0.51
CUX1-212ENST00000547394 MROH7Q68CQ1 1323 aa11.85□□□□□ -0.51
CUX1-212ENST00000547394 H0YCG3 227 aa11.85□□□□□ -0.51
CUX1-212ENST00000547394 LGALS2P05162 132 aa11.85□□□□□ -0.51
CUX1-212ENST00000547394 MAPK4P31152 587 aa11.85□□□□□ -0.51
CUX1-212ENST00000547394 GTF2H1P32780 548 aa11.85□□□□□ -0.51
CUX1-212ENST00000547394 CYP2C19P33261 490 aa11.85□□□□□ -0.51
CUX1-212ENST00000547394 NSFP46459 744 aaKnown RBP11.85□□□□□ -0.51
CUX1-212ENST00000547394 ATP1A2P50993 1020 aa11.85□□□□□ -0.51
CUX1-212ENST00000547394 TRIP13Q15645 432 aaPredicted RBP11.85□□□□□ -0.51
CUX1-212ENST00000547394 TTMPQ5BVD1 217 aa11.85□□□□□ -0.51
CUX1-212ENST00000547394 LDLRAD1Q5T700 205 aa11.85□□□□□ -0.51
CUX1-212ENST00000547394 ATF7IP2Q5U623 682 aa11.85□□□□□ -0.51
CUX1-212ENST00000547394 SLFN12LQ6IEE8 588 aa11.85□□□□□ -0.51
CUX1-212ENST00000547394 FOXR1Q6PIV2 292 aa11.85□□□□□ -0.51
CUX1-212ENST00000547394 MAATS1Q7Z4T9 603 aa11.85□□□□□ -0.51
CUX1-212ENST00000547394 MCOLN2Q8IZK6 566 aa11.85□□□□□ -0.51
CUX1-212ENST00000547394 FAM71BQ8TC56 605 aa11.85□□□□□ -0.51
CUX1-212ENST00000547394 MKI67P46013 3256 aaKnown RBP11.85□□□□□ -0.51
CUX1-212ENST00000547394 GPR25O00155 361 aa11.85□□□□□ -0.51
CUX1-212ENST00000547394 PIK3R2O00459 728 aa11.85□□□□□ -0.51
CUX1-212ENST00000547394 GZMAP12544 262 aa11.85□□□□□ -0.51
CUX1-212ENST00000547394 UNGP13051 313 aaPredicted RBP11.85□□□□□ -0.51
CUX1-212ENST00000547394 CAPN2P17655 700 aa11.85□□□□□ -0.51
CUX1-212ENST00000547394 TMOD1P28289 359 aa11.85□□□□□ -0.51
CUX1-212ENST00000547394 PSMC4P43686 418 aa11.85□□□□□ -0.51
CUX1-212ENST00000547394 PEX5P50542 639 aa11.85□□□□□ -0.51
CUX1-212ENST00000547394 ATP13A4Q4VNC1 1196 aa11.85□□□□□ -0.51
CUX1-212ENST00000547394 CYP4A22Q5TCH4 519 aa11.85□□□□□ -0.51
CUX1-212ENST00000547394 IER5Q5VY09 327 aa11.85□□□□□ -0.51
CUX1-212ENST00000547394 TAPT1Q6NXT6 567 aa11.85□□□□□ -0.51
CUX1-212ENST00000547394 DPP9Q86TI2 863 aa11.85□□□□□ -0.51
CUX1-212ENST00000547394 PRUNE1Q86TP1 453 aa11.85□□□□□ -0.51
CUX1-212ENST00000547394 ZBTB8OSQ8IWT0 167 aa11.85□□□□□ -0.51
CUX1-212ENST00000547394 PRELID2Q8N945 189 aa11.85□□□□□ -0.51
CUX1-212ENST00000547394 PIK3R5Q8WYR1 880 aa11.85□□□□□ -0.51
CUX1-212ENST00000547394 L3MBTL3Q96JM7 780 aaPredicted RBP11.85□□□□□ -0.51
CUX1-212ENST00000547394 MS4A4AQ96JQ5 239 aa11.85□□□□□ -0.51
CUX1-212ENST00000547394 PTPN18Q99952 460 aa11.85□□□□□ -0.51
CUX1-212ENST00000547394 GTF3C4Q9UKN8 822 aa11.85□□□□□ -0.51
CUX1-212ENST00000547394 ABLIM1O14639 778 aa11.84□□□□□ -0.51
CUX1-212ENST00000547394 PMM2O15305 246 aa11.84□□□□□ -0.51
CUX1-212ENST00000547394 MEFVO15553 781 aaPredicted RBP11.84□□□□□ -0.51
CUX1-212ENST00000547394 CYP1A2P05177 515 aa11.84□□□□□ -0.51
CUX1-212ENST00000547394 NFICP08651 508 aa11.84□□□□□ -0.51
CUX1-212ENST00000547394 RPL7AP62424 266 aaKnown RBP11.84□□□□□ -0.51
CUX1-212ENST00000547394 CLDN10P78369 228 aa11.84□□□□□ -0.51
CUX1-212ENST00000547394 GLE1Q53GS7 698 aaKnown RBP11.84□□□□□ -0.51
CUX1-212ENST00000547394 BRSK2Q8IWQ3 736 aa11.84□□□□□ -0.51
CUX1-212ENST00000547394 MAGOHBQ96A72 148 aaKnown RBP11.84□□□□□ -0.51
CUX1-212ENST00000547394 FAM49AQ9H0Q0 323 aaPredicted RBP11.84□□□□□ -0.51
CUX1-212ENST00000547394 ACBD3Q9H3P7 528 aa11.84□□□□□ -0.51
CUX1-212ENST00000547394 PCDHB2Q9Y5E7 798 aa11.84□□□□□ -0.51
CUX1-212ENST00000547394 PI4K2BG5E9Z4 385 aa11.84□□□□□ -0.51
CUX1-212ENST00000547394 PIGRP01833 764 aa11.84□□□□□ -0.51
CUX1-212ENST00000547394 AARSP49588 968 aaKnown RBP eCLIP11.84□□□□□ -0.512e-6■■■■■ 51.2
CUX1-212ENST00000547394 VPS41P49754 854 aa11.84□□□□□ -0.51
CUX1-212ENST00000547394 PLTPP55058 493 aa11.84□□□□□ -0.51
CUX1-212ENST00000547394 DR1Q01658 176 aa11.84□□□□□ -0.51
CUX1-212ENST00000547394 CFAP58Q5T655 872 aa11.84□□□□□ -0.51
CUX1-212ENST00000547394 EMBQ6PCB8 327 aa11.84□□□□□ -0.51
CUX1-212ENST00000547394 MAMDC4Q6UXC1 1216 aa11.84□□□□□ -0.51
CUX1-212ENST00000547394 UBL4BQ8N7F7 174 aa11.84□□□□□ -0.51
CUX1-212ENST00000547394 C1orf131Q8NDD1 294 aaKnown RBP11.84□□□□□ -0.51
CUX1-212ENST00000547394 UBLCP1Q8WVY7 318 aaPredicted RBP11.84□□□□□ -0.51
CUX1-212ENST00000547394 TFAP2BQ92481 460 aa11.84□□□□□ -0.51
CUX1-212ENST00000547394 RUFY1Q96T51 708 aa11.84□□□□□ -0.51
CUX1-212ENST00000547394 CARD9Q9H257 536 aa11.84□□□□□ -0.51
CUX1-212ENST00000547394 SMARCAD1Q9H4L7 1026 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms