RNA–Protein interactions for RNA: ENST00000545889.5

CLIP1-218, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 4,633 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-218ENST00000545889 DDX55Q8NHQ9 600 aaKnown RBP eCLIP9.11□□□□□ -0.95
CLIP1-218ENST00000545889 PDCD2LQ9BRP1 358 aa9.11□□□□□ -0.95
CLIP1-218ENST00000545889 EDEM3Q9BZQ6 932 aa9.11□□□□□ -0.95
CLIP1-218ENST00000545889 A1CFQ9NQ94 594 aaKnown RBP9.11□□□□□ -0.95
CLIP1-218ENST00000545889 AGAP1Q9UPQ3 857 aa9.11□□□□□ -0.95
CLIP1-218ENST00000545889 RIPK3Q9Y572 518 aa9.11□□□□□ -0.95
CLIP1-218ENST00000545889 ATRNL1Q5VV63 1379 aa9.1□□□□□ -0.95
CLIP1-218ENST00000545889 SNHG28P0DPA3 235 aa9.1□□□□□ -0.95
CLIP1-218ENST00000545889 EEF1GP26641 437 aaKnown RBP9.1□□□□□ -0.95
CLIP1-218ENST00000545889 SREBF1P36956 1147 aa9.1□□□□□ -0.95
CLIP1-218ENST00000545889 ZNF131P52739 623 aa9.1□□□□□ -0.95
CLIP1-218ENST00000545889 NLRP11P59045 1033 aaKnown RBP9.1□□□□□ -0.95
CLIP1-218ENST00000545889 VSNL1P62760 191 aa9.1□□□□□ -0.95
CLIP1-218ENST00000545889 SNX17Q15036 470 aa9.1□□□□□ -0.95
CLIP1-218ENST00000545889 ZNF658Q5TYW1 1059 aaPredicted RBP9.1□□□□□ -0.95
CLIP1-218ENST00000545889 SZRD1Q7Z422 152 aa9.1□□□□□ -0.95
CLIP1-218ENST00000545889 EFHBQ8N7U6 833 aa9.1□□□□□ -0.95
CLIP1-218ENST00000545889 APPL2Q8NEU8 664 aa9.1□□□□□ -0.95
CLIP1-218ENST00000545889 TMEM143Q96AN5 459 aa9.1□□□□□ -0.95
CLIP1-218ENST00000545889 TEPSINQ96N21 525 aa9.1□□□□□ -0.95
CLIP1-218ENST00000545889 FUCA2Q9BTY2 467 aa9.1□□□□□ -0.95
CLIP1-218ENST00000545889 CCSER1Q9C0I3 900 aa9.1□□□□□ -0.95
CLIP1-218ENST00000545889 SBF2Q86WG5 1849 aa9.1□□□□□ -0.95
CLIP1-218ENST00000545889 DDX60Q8IY21 1712 aaKnown RBP9.1□□□□□ -0.95
CLIP1-218ENST00000545889 MEIS2O14770 477 aa9.1□□□□□ -0.95
CLIP1-218ENST00000545889 HMBSP08397 361 aa9.1□□□□□ -0.95
CLIP1-218ENST00000545889 GGCXP38435 758 aa9.1□□□□□ -0.95
CLIP1-218ENST00000545889 EHHADHQ08426 723 aa9.1□□□□□ -0.95
CLIP1-218ENST00000545889 MEI1Q5TIA1 1274 aa9.1□□□□□ -0.95
CLIP1-218ENST00000545889 DHX38Q92620 1227 aaKnown RBP9.1□□□□□ -0.95
CLIP1-218ENST00000545889 MRPS31Q92665 395 aaKnown RBP9.1□□□□□ -0.95
CLIP1-218ENST00000545889 FGD4Q96M96 766 aa9.1□□□□□ -0.95
CLIP1-218ENST00000545889 SRPK1Q96SB4 655 aaKnown RBP9.1□□□□□ -0.95
CLIP1-218ENST00000545889 SGIP1Q9BQI5 828 aa9.1□□□□□ -0.95
CLIP1-218ENST00000545889 MOV10L1Q9BXT6 1211 aaKnown RBP9.1□□□□□ -0.95
CLIP1-218ENST00000545889 DPH5Q9H2P9 285 aa9.1□□□□□ -0.95
CLIP1-218ENST00000545889 RANBP17Q9H2T7 1088 aaKnown RBP9.1□□□□□ -0.95
CLIP1-218ENST00000545889 SNCAIPQ9Y6H5 919 aa9.1□□□□□ -0.95
CLIP1-218ENST00000545889 SCINQ9Y6U3 715 aa9.1□□□□□ -0.95
CLIP1-218ENST00000545889 PASKQ96RG2 1323 aa9.1□□□□□ -0.95
CLIP1-218ENST00000545889 COL5A3P25940 1745 aaPredicted RBP9.1□□□□□ -0.95
CLIP1-218ENST00000545889 GPR182O15218 404 aa9.1□□□□□ -0.95
CLIP1-218ENST00000545889 FKTNO75072 461 aa9.1□□□□□ -0.95
CLIP1-218ENST00000545889 ESRRBO95718 433 aa9.1□□□□□ -0.95
CLIP1-218ENST00000545889 KRT3P12035 628 aa9.1□□□□□ -0.95
CLIP1-218ENST00000545889 NPEPPSP55786 919 aa9.1□□□□□ -0.95
CLIP1-218ENST00000545889 SP3Q02447 781 aa9.1□□□□□ -0.95
CLIP1-218ENST00000545889 ASPHQ12797 758 aa9.1□□□□□ -0.95
CLIP1-218ENST00000545889 NME3Q13232 169 aa9.1□□□□□ -0.95
CLIP1-218ENST00000545889 MTMR3Q13615 1198 aa9.1□□□□□ -0.95
CLIP1-218ENST00000545889 BTG3Q14201 252 aaPredicted RBP9.1□□□□□ -0.95
CLIP1-218ENST00000545889 PLA2G4FQ68DD2 849 aa9.1□□□□□ -0.95
CLIP1-218ENST00000545889 FBXO16Q8IX29 292 aaPredicted RBP9.1□□□□□ -0.95
CLIP1-218ENST00000545889 PPFIBP2Q8ND30 876 aa9.1□□□□□ -0.95
CLIP1-218ENST00000545889 PBXIP1Q96AQ6 731 aa9.1□□□□□ -0.95
CLIP1-218ENST00000545889 MCUR1Q96AQ8 359 aa9.1□□□□□ -0.95
CLIP1-218ENST00000545889 ZWILCHQ9H900 591 aa9.1□□□□□ -0.95
CLIP1-218ENST00000545889 FAM53CQ9NYF3 392 aa9.1□□□□□ -0.95
CLIP1-218ENST00000545889 SEL1LQ9UBV2 794 aa9.1□□□□□ -0.95
CLIP1-218ENST00000545889 RAB23Q9ULC3 237 aa9.1□□□□□ -0.95
CLIP1-218ENST00000545889 AKAP11Q9UKA4 1901 aa9.09□□□□□ -0.95
CLIP1-218ENST00000545889 PRR23AA6NEV1 266 aa9.09□□□□□ -0.95
CLIP1-218ENST00000545889 ECEL1O95672 775 aa9.09□□□□□ -0.95
CLIP1-218ENST00000545889 CKMP06732 381 aa9.09□□□□□ -0.95
CLIP1-218ENST00000545889 USP4Q13107 963 aa9.09□□□□□ -0.95
CLIP1-218ENST00000545889 PPIL2Q13356 520 aa9.09□□□□□ -0.95
CLIP1-218ENST00000545889 TFDP2Q14188 446 aa9.09□□□□□ -0.95
CLIP1-218ENST00000545889 PDIA5Q14554 519 aa9.09□□□□□ -0.95
CLIP1-218ENST00000545889 EFHC2Q5JST6 749 aa9.09□□□□□ -0.95
CLIP1-218ENST00000545889 CCDC170Q8IYT3 715 aa9.09□□□□□ -0.95
CLIP1-218ENST00000545889 RAB42Q8N4Z0 105 aa9.09□□□□□ -0.95
CLIP1-218ENST00000545889 ANKRD42Q8N9B4 389 aa9.09□□□□□ -0.95
CLIP1-218ENST00000545889 ENGASEQ8NFI3 743 aa9.09□□□□□ -0.95
CLIP1-218ENST00000545889 B4GALNT2Q8NHY0 566 aa9.09□□□□□ -0.95
CLIP1-218ENST00000545889 HSPH1Q92598 858 aa9.09□□□□□ -0.95
CLIP1-218ENST00000545889 RMDN1Q96DB5 314 aa9.09□□□□□ -0.95
CLIP1-218ENST00000545889 MAGEB5Q9BZ81 275 aa9.09□□□□□ -0.95
CLIP1-218ENST00000545889 IRX2Q9BZI1 471 aaPredicted RBP9.09□□□□□ -0.95
CLIP1-218ENST00000545889 HYOU1Q9Y4L1 999 aa9.09□□□□□ -0.95
CLIP1-218ENST00000545889 SAR1BQ9Y6B6 198 aa9.09□□□□□ -0.95
CLIP1-218ENST00000545889 UBE4BO95155 1302 aa9.09□□□□□ -0.95
CLIP1-218ENST00000545889 SYNGAP1Q96PV0 1343 aa9.09□□□□□ -0.95
CLIP1-218ENST00000545889 MAFGO15525 162 aa9.09□□□□□ -0.95
CLIP1-218ENST00000545889 MEFVO15553 781 aaPredicted RBP9.09□□□□□ -0.95
CLIP1-218ENST00000545889 B3GAT3O94766 335 aa9.09□□□□□ -0.95
CLIP1-218ENST00000545889 TPP2P29144 1249 aaPredicted RBP9.09□□□□□ -0.95
CLIP1-218ENST00000545889 PRCPP42785 496 aa9.09□□□□□ -0.95
CLIP1-218ENST00000545889 IRAK1P51617 712 aa9.09□□□□□ -0.95
CLIP1-218ENST00000545889 RBP5P82980 135 aa9.09□□□□□ -0.95
CLIP1-218ENST00000545889 URB1O60287 2271 aaKnown RBP9.09□□□□□ -0.95
CLIP1-218ENST00000545889 RGS16O15492 202 aaPredicted RBP9.09□□□□□ -0.95
CLIP1-218ENST00000545889 HSPA6P17066 643 aa9.09□□□□□ -0.95
CLIP1-218ENST00000545889 TBXAS1P24557 533 aaPredicted RBP9.09□□□□□ -0.95
CLIP1-218ENST00000545889 YWHABP31946 246 aaKnown RBP9.09□□□□□ -0.95
CLIP1-218ENST00000545889 STX2P32856 288 aa9.09□□□□□ -0.95
CLIP1-218ENST00000545889 EFCAB12Q6NXP0 572 aa9.09□□□□□ -0.95
CLIP1-218ENST00000545889 IL31RAQ8NI17 732 aa9.09□□□□□ -0.95
CLIP1-218ENST00000545889 WNK4Q96J92 1243 aa9.09□□□□□ -0.95
CLIP1-218ENST00000545889 TRIM9Q9C026 710 aa9.09□□□□□ -0.95
CLIP1-218ENST00000545889 SARS2Q9NP81 518 aaKnown RBP9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms