RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 B3GAT3O94766 335 aa14.14□□□□□ -0.15
USP28-212ENST00000544750 RETP07949 1114 aa14.14□□□□□ -0.15
USP28-212ENST00000544750 CHRNB1P11230 501 aa14.14□□□□□ -0.15
USP28-212ENST00000544750 BRCC3P46736 316 aa14.14□□□□□ -0.15
USP28-212ENST00000544750 PRPF4BQ13523 1007 aaKnown RBP14.14□□□□□ -0.15
USP28-212ENST00000544750 LPAL2Q16609 132 aa14.14□□□□□ -0.15
USP28-212ENST00000544750 PPM1JQ5JR12 505 aa14.14□□□□□ -0.15
USP28-212ENST00000544750 VITQ6UXI7 678 aa14.14□□□□□ -0.15
USP28-212ENST00000544750 MAEAQ7L5Y9 396 aa14.14□□□□□ -0.15
USP28-212ENST00000544750 ZBTB8OSQ8IWT0 167 aa14.14□□□□□ -0.15
USP28-212ENST00000544750 TCEAL8Q8IYN2 117 aa14.14□□□□□ -0.15
USP28-212ENST00000544750 MCPH1Q8NEM0 835 aa14.14□□□□□ -0.15
USP28-212ENST00000544750 IRF7Q92985 503 aa14.14□□□□□ -0.15
USP28-212ENST00000544750 MTMR9Q96QG7 549 aa14.14□□□□□ -0.15
USP28-212ENST00000544750 C2orf40Q9H1Z8 148 aa14.14□□□□□ -0.15
USP28-212ENST00000544750 BRD9Q9H8M2 597 aa14.14□□□□□ -0.15
USP28-212ENST00000544750 ZFP14Q9HCL3 533 aa14.14□□□□□ -0.15
USP28-212ENST00000544750 NCANO14594 1321 aa14.14□□□□□ -0.15
USP28-212ENST00000544750 I3L4J1 428 aa14.13□□□□□ -0.15
USP28-212ENST00000544750 ARNTLO00327 626 aa14.13□□□□□ -0.15
USP28-212ENST00000544750 CTDNEP1O95476 244 aa14.13□□□□□ -0.15
USP28-212ENST00000544750 SEC24AO95486 1093 aa14.13□□□□□ -0.15
USP28-212ENST00000544750 PRKCBP05771 671 aa14.13□□□□□ -0.15
USP28-212ENST00000544750 ATF2P15336 505 aa14.13□□□□□ -0.15
USP28-212ENST00000544750 XBP1P17861 261 aa14.13□□□□□ -0.15
USP28-212ENST00000544750 CCR3P51677 355 aa14.13□□□□□ -0.15
USP28-212ENST00000544750 SATB1Q01826 763 aa14.13□□□□□ -0.15
USP28-212ENST00000544750 SOX4Q06945 474 aaPredicted RBP14.13□□□□□ -0.15
USP28-212ENST00000544750 MRPL58Q14197 206 aaKnown RBP14.13□□□□□ -0.15
USP28-212ENST00000544750 CALCRLQ16602 461 aa14.13□□□□□ -0.15
USP28-212ENST00000544750 MAPK6Q16659 721 aa14.13□□□□□ -0.15
USP28-212ENST00000544750 XKR4Q5GH76 650 aa14.13□□□□□ -0.15
USP28-212ENST00000544750 GLRA4Q5JXX5 417 aa14.13□□□□□ -0.15
USP28-212ENST00000544750 FAM3CQ92520 227 aa14.13□□□□□ -0.15
USP28-212ENST00000544750 ZSWIM3Q96MP5 696 aa14.13□□□□□ -0.15
USP28-212ENST00000544750 CCDC43Q96MW1 224 aaKnown RBP14.13□□□□□ -0.15
USP28-212ENST00000544750 UROC1Q96N76 676 aa14.13□□□□□ -0.15
USP28-212ENST00000544750 ADPGKQ9BRR6 497 aa14.13□□□□□ -0.15
USP28-212ENST00000544750 TRMT61BQ9BVS5 477 aaKnown RBP14.13□□□□□ -0.15
USP28-212ENST00000544750 LMAN1LQ9HAT1 526 aa14.13□□□□□ -0.15
USP28-212ENST00000544750 GOLGA2P5Q9HBQ8 144 aa14.13□□□□□ -0.15
USP28-212ENST00000544750 SEMA4GQ9NTN9 838 aa14.13□□□□□ -0.15
USP28-212ENST00000544750 DAXXQ9UER7 740 aaPredicted RBP14.13□□□□□ -0.15
USP28-212ENST00000544750 GDAQ9Y2T3 454 aa14.13□□□□□ -0.15
USP28-212ENST00000544750 DENND4CQ5VZ89 1909 aa14.12□□□□□ -0.15
USP28-212ENST00000544750 ATG2BQ96BY7 2078 aa14.12□□□□□ -0.15
USP28-212ENST00000544750 LOC105378220A0A1B0GUY1 285 aaPredicted RBP14.12□□□□□ -0.15
USP28-212ENST00000544750 HRO43593 1189 aa14.12□□□□□ -0.15
USP28-212ENST00000544750 CDKL5O76039 1030 aa14.12□□□□□ -0.15
USP28-212ENST00000544750 PAPSS2O95340 614 aaPredicted RBP14.12□□□□□ -0.15
USP28-212ENST00000544750 LRG1P02750 347 aa14.12□□□□□ -0.15
USP28-212ENST00000544750 FDPSP14324 419 aaKnown RBP14.12□□□□□ -0.15
USP28-212ENST00000544750 PSMC3P17980 439 aa14.12□□□□□ -0.15
USP28-212ENST00000544750 ATP2B1P20020 1258 aa14.12□□□□□ -0.15
USP28-212ENST00000544750 MLLT6P55198 1093 aaPredicted RBP14.12□□□□□ -0.15
USP28-212ENST00000544750 PPP2R5DQ14738 602 aa14.12□□□□□ -0.15
USP28-212ENST00000544750 CSRP2Q16527 193 aa14.12□□□□□ -0.15
USP28-212ENST00000544750 DCAF4L1Q3SXM0 396 aa14.12□□□□□ -0.15
USP28-212ENST00000544750 WDR44Q5JSH3 913 aa14.12□□□□□ -0.15
USP28-212ENST00000544750 NT5DC1Q5TFE4 455 aa14.12□□□□□ -0.15
USP28-212ENST00000544750 ALKAL1Q6UXT8 129 aa14.12□□□□□ -0.15
USP28-212ENST00000544750 PRR23CQ6ZRP0 262 aa14.12□□□□□ -0.15
USP28-212ENST00000544750 CATSPER3Q86XQ3 398 aa14.12□□□□□ -0.15
USP28-212ENST00000544750 CORO1BQ9BR76 489 aa14.12□□□□□ -0.15
USP28-212ENST00000544750 TRPV4Q9HBA0 871 aa14.12□□□□□ -0.15
USP28-212ENST00000544750 RAB23Q9ULC3 237 aa14.12□□□□□ -0.15
USP28-212ENST00000544750 PIAS3Q9Y6X2 628 aa14.12□□□□□ -0.15
USP28-212ENST00000544750 CACNA1GO43497 2377 aa14.12□□□□□ -0.15
USP28-212ENST00000544750 SMIM28A0A1B0GU29 152 aa14.11□□□□□ -0.15
USP28-212ENST00000544750 K7ESF4 209 aa14.11□□□□□ -0.15
USP28-212ENST00000544750 ZNF197O14709 1029 aa14.11□□□□□ -0.15
USP28-212ENST00000544750 TRAPPC3O43617 180 aa14.11□□□□□ -0.15
USP28-212ENST00000544750 GDF9O60383 454 aa14.11□□□□□ -0.15
USP28-212ENST00000544750 PFKFB2O60825 505 aa14.11□□□□□ -0.15
USP28-212ENST00000544750 MED24O75448 989 aa14.11□□□□□ -0.15
USP28-212ENST00000544750 SEC24BO95487 1268 aa14.11□□□□□ -0.15
USP28-212ENST00000544750 ANK1P16157 1881 aa14.11□□□□□ -0.15
USP28-212ENST00000544750 GDI1P31150 447 aa14.11□□□□□ -0.15
USP28-212ENST00000544750 KRT2P35908 639 aa14.11□□□□□ -0.15
USP28-212ENST00000544750 TXKP42681 527 aa14.11□□□□□ -0.15
USP28-212ENST00000544750 NAMPTP43490 491 aa14.11□□□□□ -0.15
USP28-212ENST00000544750 CXCL12P48061 93 aa14.11□□□□□ -0.15
USP28-212ENST00000544750 EPHA5P54756 1037 aa14.11□□□□□ -0.15
USP28-212ENST00000544750 DMWDQ09019 674 aa14.11□□□□□ -0.15
USP28-212ENST00000544750 DEPDC1BQ8WUY9 529 aa14.11□□□□□ -0.15
USP28-212ENST00000544750 SMARCD2Q92925 531 aa14.11□□□□□ -0.15
USP28-212ENST00000544750 TUFT1Q9NNX1 390 aa14.11□□□□□ -0.15
USP28-212ENST00000544750 INSL5Q9Y5Q6 135 aa14.11□□□□□ -0.15
USP28-212ENST00000544750 MYH11P35749 1972 aa14.11□□□□□ -0.15
USP28-212ENST00000544750 SYN3O14994 580 aa14.1□□□□□ -0.15
USP28-212ENST00000544750 NEMFO60524 1076 aa14.1□□□□□ -0.15
USP28-212ENST00000544750 CYP11B2P19099 503 aa14.1□□□□□ -0.15
USP28-212ENST00000544750 ELF1P32519 619 aa14.1□□□□□ -0.15
USP28-212ENST00000544750 PTGDRQ13258 359 aa14.1□□□□□ -0.15
USP28-212ENST00000544750 SIM2Q14190 667 aaPredicted RBP14.1□□□□□ -0.15
USP28-212ENST00000544750 TPGS2Q68CL5 300 aa14.1□□□□□ -0.15
USP28-212ENST00000544750 PRR23BQ6ZRT6 265 aa14.1□□□□□ -0.15
USP28-212ENST00000544750 MFSD6LQ8IWD5 586 aa14.1□□□□□ -0.15
USP28-212ENST00000544750 HS6ST3Q8IZP7 471 aa14.1□□□□□ -0.15
USP28-212ENST00000544750 SPEM1Q8N4L4 309 aa14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms