RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 ZSCAN5CA6NGD5 496 aaPredicted RBP15.39■□□□□ 0.05
VPS33A-209ENST00000544349 MYL3P08590 195 aa15.39■□□□□ 0.05
VPS33A-209ENST00000544349 GGCXP38435 758 aa15.39■□□□□ 0.05
VPS33A-209ENST00000544349 PSEN2P49810 448 aa15.39■□□□□ 0.05
VPS33A-209ENST00000544349 MFAP3P55082 362 aa15.39■□□□□ 0.05
VPS33A-209ENST00000544349 TMEM132AQ24JP5 1023 aa15.39■□□□□ 0.05
VPS33A-209ENST00000544349 ZNF568Q3ZCX4 644 aa15.39■□□□□ 0.05
VPS33A-209ENST00000544349 MFSD14CQ5VZR4 134 aa15.39■□□□□ 0.05
VPS33A-209ENST00000544349 SND1Q7KZF4 910 aaKnown RBP eCLIP15.39■□□□□ 0.05
VPS33A-209ENST00000544349 ZNF410Q86VK4 478 aa15.39■□□□□ 0.05
VPS33A-209ENST00000544349 REM2Q8IYK8 340 aaPredicted RBP15.39■□□□□ 0.05
VPS33A-209ENST00000544349 NLRP7Q8WX94 980 aa15.39■□□□□ 0.05
VPS33A-209ENST00000544349 SYT11Q9BT88 431 aa15.39■□□□□ 0.05
VPS33A-209ENST00000544349 ACBD3Q9H3P7 528 aa15.39■□□□□ 0.05
VPS33A-209ENST00000544349 STIM2Q9P246 746 aa15.39■□□□□ 0.05
VPS33A-209ENST00000544349 NAGPAQ9UK23 515 aa15.39■□□□□ 0.05
VPS33A-209ENST00000544349 MBLAC1A4D2B0 266 aaPredicted RBP15.38■□□□□ 0.05
VPS33A-209ENST00000544349 DUSP11O75319 330 aaKnown RBP15.38■□□□□ 0.05
VPS33A-209ENST00000544349 CYBAP13498 195 aa15.38■□□□□ 0.05
VPS33A-209ENST00000544349 C8orf74Q6P047 294 aa15.38■□□□□ 0.05
VPS33A-209ENST00000544349 CDR2LQ86X02 465 aaPredicted RBP15.38■□□□□ 0.05
VPS33A-209ENST00000544349 TATDN2Q93075 761 aa15.38■□□□□ 0.05
VPS33A-209ENST00000544349 DDX3XO00571 662 aaKnown RBP eCLIP15.38■□□□□ 0.056e-17■■■□□ 18.4
VPS33A-209ENST00000544349 VNN1O95497 513 aa15.38■□□□□ 0.05
VPS33A-209ENST00000544349 HLA-DRAP01903 254 aa15.38■□□□□ 0.05
VPS33A-209ENST00000544349 ADAM17P78536 824 aa15.38■□□□□ 0.05
VPS33A-209ENST00000544349 SURF1Q15526 300 aa15.38■□□□□ 0.05
VPS33A-209ENST00000544349 FSCN1Q16658 493 aaKnown RBP15.38■□□□□ 0.05
VPS33A-209ENST00000544349 ALKBH5Q6P6C2 394 aaKnown RBP15.38■□□□□ 0.05
VPS33A-209ENST00000544349 THNSL1Q8IYQ7 743 aa15.38■□□□□ 0.05
VPS33A-209ENST00000544349 OR5B17Q8NGF7 314 aa15.38■□□□□ 0.05
VPS33A-209ENST00000544349 SLC30A5Q8TAD4 765 aa15.38■□□□□ 0.05
VPS33A-209ENST00000544349 PPP1R13LQ8WUF5 828 aa15.38■□□□□ 0.05
VPS33A-209ENST00000544349 SHC3Q92529 594 aa15.38■□□□□ 0.05
VPS33A-209ENST00000544349 PI4K2AQ9BTU6 479 aa15.38■□□□□ 0.05
VPS33A-209ENST00000544349 CDT1Q9H211 546 aa15.38■□□□□ 0.05
VPS33A-209ENST00000544349 TSKSQ9UJT2 592 aa15.38■□□□□ 0.05
VPS33A-209ENST00000544349 A0A0U1RQG5 324 aaPredicted RBP15.37■□□□□ 0.05
VPS33A-209ENST00000544349 SMIM35A0A1B0GVV1 85 aa15.37■□□□□ 0.05
VPS33A-209ENST00000544349 FAM170AA1A519 330 aa15.37■□□□□ 0.05
VPS33A-209ENST00000544349 AP3M2P53677 418 aa15.37■□□□□ 0.05
VPS33A-209ENST00000544349 RNASE9P60153 205 aaKnown RBP15.37■□□□□ 0.05
VPS33A-209ENST00000544349 GCNT1Q02742 428 aa15.37■□□□□ 0.05
VPS33A-209ENST00000544349 PRKCZQ05513 592 aa15.37■□□□□ 0.05
VPS33A-209ENST00000544349 BIRC3Q13489 604 aa15.37■□□□□ 0.05
VPS33A-209ENST00000544349 HIC1Q14526 733 aa15.37■□□□□ 0.05
VPS33A-209ENST00000544349 CCDC70Q6NSX1 233 aa15.37■□□□□ 0.05
VPS33A-209ENST00000544349 WDR49Q8IV35 697 aa15.37■□□□□ 0.05
VPS33A-209ENST00000544349 FAM71AQ8IYT1 594 aa15.37■□□□□ 0.05
VPS33A-209ENST00000544349 TSEN2Q8NCE0 465 aaKnown RBP15.37■□□□□ 0.05
VPS33A-209ENST00000544349 LNX1Q8TBB1 728 aaPredicted RBP15.37■□□□□ 0.05
VPS33A-209ENST00000544349 ELMO3Q96BJ8 720 aa15.37■□□□□ 0.05
VPS33A-209ENST00000544349 SCLT1Q96NL6 688 aa15.37■□□□□ 0.05
VPS33A-209ENST00000544349 KATNAL1Q9BW62 490 aa15.37■□□□□ 0.05
VPS33A-209ENST00000544349 ESYT3A0FGR9 886 aa15.37■□□□□ 0.05
VPS33A-209ENST00000544349 GPR25O00155 361 aa15.37■□□□□ 0.05
VPS33A-209ENST00000544349 GLI1P08151 1106 aa15.37■□□□□ 0.05
VPS33A-209ENST00000544349 ARF4P18085 180 aaPredicted RBP15.37■□□□□ 0.05
VPS33A-209ENST00000544349 PIK3CAP42336 1068 aa15.37■□□□□ 0.05
VPS33A-209ENST00000544349 PAFAH1B1P43034 410 aa15.37■□□□□ 0.05
VPS33A-209ENST00000544349 PURAQ00577 322 aaKnown RBP15.37■□□□□ 0.05
VPS33A-209ENST00000544349 CDC42EP1Q00587 391 aa15.37■□□□□ 0.05
VPS33A-209ENST00000544349 CAP1Q01518 475 aa15.37■□□□□ 0.05
VPS33A-209ENST00000544349 SP3Q02447 781 aa15.37■□□□□ 0.05
VPS33A-209ENST00000544349 CFAP221Q4G0U5 840 aa15.37■□□□□ 0.05
VPS33A-209ENST00000544349 WDR44Q5JSH3 913 aa15.37■□□□□ 0.05
VPS33A-209ENST00000544349 ENOSF1Q7L5Y1 443 aa15.37■□□□□ 0.05
VPS33A-209ENST00000544349 CEP120Q8N960 986 aa15.37■□□□□ 0.05
VPS33A-209ENST00000544349 FAM81BQ96LP2 452 aa15.37■□□□□ 0.05
VPS33A-209ENST00000544349 FAM49AQ9H0Q0 323 aaPredicted RBP15.37■□□□□ 0.05
VPS33A-209ENST00000544349 ADAMTS10Q9H324 1103 aa15.37■□□□□ 0.05
VPS33A-209ENST00000544349 CREBZFQ9NS37 354 aa15.37■□□□□ 0.05
VPS33A-209ENST00000544349 CYP2C9P11712 490 aa15.36■□□□□ 0.05
VPS33A-209ENST00000544349 GJA9P57773 515 aa15.36■□□□□ 0.05
VPS33A-209ENST00000544349 GLYCTKQ8IVS8 523 aa15.36■□□□□ 0.05
VPS33A-209ENST00000544349 LRRC57Q8N9N7 239 aa15.36■□□□□ 0.05
VPS33A-209ENST00000544349 RUBCNQ92622 972 aa15.36■□□□□ 0.05
VPS33A-209ENST00000544349 FAM212AQ96EL1 285 aa15.36■□□□□ 0.05
VPS33A-209ENST00000544349 CPB2Q96IY4 423 aa15.36■□□□□ 0.05
VPS33A-209ENST00000544349 PDZD7Q9H5P4 517 aa15.36■□□□□ 0.05
VPS33A-209ENST00000544349 C1orf112Q9NSG2 853 aa15.36■□□□□ 0.05
VPS33A-209ENST00000544349 ATP8B3O60423 1300 aa15.36■□□□□ 0.05
VPS33A-209ENST00000544349 ANK1P16157 1881 aa15.36■□□□□ 0.05
VPS33A-209ENST00000544349 TRIP12Q14669 1992 aaPredicted RBP15.35■□□□□ 0.05
VPS33A-209ENST00000544349 CASP8AP2Q9UKL3 1982 aa15.35■□□□□ 0.05
VPS33A-209ENST00000544349 MYADML2A6NDP7 307 aa15.35■□□□□ 0.05
VPS33A-209ENST00000544349 BTNL10A8MVZ5 291 aa15.35■□□□□ 0.05
VPS33A-209ENST00000544349 GPR32O75388 356 aa15.35■□□□□ 0.05
VPS33A-209ENST00000544349 C6orf222P0C671 652 aaPredicted RBP15.35■□□□□ 0.05
VPS33A-209ENST00000544349 MCF2P10911 925 aa15.35■□□□□ 0.05
VPS33A-209ENST00000544349 TNFAIP3P21580 790 aa15.35■□□□□ 0.05
VPS33A-209ENST00000544349 USP8P40818 1118 aa15.35■□□□□ 0.05
VPS33A-209ENST00000544349 OSTNP61366 133 aa15.35■□□□□ 0.05
VPS33A-209ENST00000544349 ZSCAN26Q16670 478 aa15.35■□□□□ 0.05
VPS33A-209ENST00000544349 KIZQ2M2Z5 673 aa15.35■□□□□ 0.05
VPS33A-209ENST00000544349 U2AF1L4Q8WU68 220 aaKnown RBP15.35■□□□□ 0.05
VPS33A-209ENST00000544349 AGPAT1Q99943 283 aa15.35■□□□□ 0.05
VPS33A-209ENST00000544349 TSPAN1O60635 241 aa15.35■□□□□ 0.05
VPS33A-209ENST00000544349 ERLIN2O94905 339 aa15.35■□□□□ 0.05
VPS33A-209ENST00000544349 CAPN2P17655 700 aa15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms