RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 PABPC3Q9H361 631 aaKnown RBP19.25■□□□□ 0.67
VIM-209ENST00000544301 LRRC19Q9H756 370 aa19.25■□□□□ 0.67
VIM-209ENST00000544301 PARP2Q9UGN5 583 aa19.25■□□□□ 0.67
VIM-209ENST00000544301 NDUFAB1O14561 156 aa19.24■□□□□ 0.67
VIM-209ENST00000544301 KCNJ1P48048 391 aa19.24■□□□□ 0.67
VIM-209ENST00000544301 LLGL2Q6P1M3 1020 aa19.24■□□□□ 0.67
VIM-209ENST00000544301 DLK2Q6UY11 383 aa19.24■□□□□ 0.67
VIM-209ENST00000544301 PLVAPQ9BX97 442 aa19.24■□□□□ 0.67
VIM-209ENST00000544301 NOVA2Q9UNW9 492 aaKnown RBP19.24■□□□□ 0.67
VIM-209ENST00000544301 PTPN22Q9Y2R2 807 aa19.24■□□□□ 0.67
VIM-209ENST00000544301 PCDHB4Q9Y5E5 795 aa19.24■□□□□ 0.67
VIM-209ENST00000544301 POLR2AP24928 1970 aaKnown RBP19.24■□□□□ 0.67
VIM-209ENST00000544301 ADCY3O60266 1144 aa19.24■□□□□ 0.67
VIM-209ENST00000544301 CFHP08603 1231 aa19.24■□□□□ 0.67
VIM-209ENST00000544301 CLTAP09496 248 aa19.24■□□□□ 0.67
VIM-209ENST00000544301 NUDT17P0C025 328 aa19.24■□□□□ 0.67
VIM-209ENST00000544301 SLC1A1P43005 524 aa19.24■□□□□ 0.67
VIM-209ENST00000544301 STAT5BP51692 787 aa19.24■□□□□ 0.67
VIM-209ENST00000544301 CORO7P57737 925 aa19.24■□□□□ 0.67
VIM-209ENST00000544301 C2CD6Q53TS8 623 aa19.24■□□□□ 0.67
VIM-209ENST00000544301 OR5B17Q8NGF7 314 aa19.24■□□□□ 0.67
VIM-209ENST00000544301 RNF25Q96BH1 459 aaPredicted RBP19.24■□□□□ 0.67
VIM-209ENST00000544301 SLC12A6Q9UHW9 1150 aa19.24■□□□□ 0.67
VIM-209ENST00000544301 FEZ2Q9UHY8 353 aaPredicted RBP19.24■□□□□ 0.67
VIM-209ENST00000544301 PTPRFP10586 1907 aa19.23■□□□□ 0.67
VIM-209ENST00000544301 A0A0G2JMZ2 1700 aa19.23■□□□□ 0.67
VIM-209ENST00000544301 SHBGP04278 402 aa19.23■□□□□ 0.67
VIM-209ENST00000544301 NEDD9Q14511 834 aa19.23■□□□□ 0.67
VIM-209ENST00000544301 LLGL1Q15334 1064 aa19.23■□□□□ 0.67
VIM-209ENST00000544301 SEZ6Q53EL9 994 aa19.23■□□□□ 0.67
VIM-209ENST00000544301 FAM160B1Q5W0V3 765 aa19.23■□□□□ 0.67
VIM-209ENST00000544301 TMEM270Q6UE05 265 aa19.23■□□□□ 0.67
VIM-209ENST00000544301 C10orf67Q8IYJ2 551 aa19.23■□□□□ 0.67
VIM-209ENST00000544301 ABRAQ8N0Z2 381 aa19.23■□□□□ 0.67
VIM-209ENST00000544301 CNTN6Q9UQ52 1028 aa19.23■□□□□ 0.67
VIM-209ENST00000544301 NUB1Q9Y5A7 615 aa19.23■□□□□ 0.67
VIM-209ENST00000544301 UMODL1Q5DID0 1318 aa19.23■□□□□ 0.67
VIM-209ENST00000544301 PASKQ96RG2 1323 aa19.23■□□□□ 0.67
VIM-209ENST00000544301 DCDC2CA8MYV0 355 aa19.22■□□□□ 0.67
VIM-209ENST00000544301 ANKRD65E5RJM6 399 aa19.22■□□□□ 0.67
VIM-209ENST00000544301 MAFO75444 373 aaPredicted RBP19.22■□□□□ 0.67
VIM-209ENST00000544301 GNA15P30679 374 aa19.22■□□□□ 0.67
VIM-209ENST00000544301 PPP2R2AP63151 447 aa19.22■□□□□ 0.67
VIM-209ENST00000544301 DRP2Q13474 957 aa19.22■□□□□ 0.67
VIM-209ENST00000544301 ODF2Q5BJF6 829 aa19.22■□□□□ 0.67
VIM-209ENST00000544301 TRIM72Q6ZMU5 477 aa19.22■□□□□ 0.67
VIM-209ENST00000544301 NCAPG2Q86XI2 1143 aa19.22■□□□□ 0.67
VIM-209ENST00000544301 C1orf54Q8WWF1 131 aa19.22■□□□□ 0.67
VIM-209ENST00000544301 ART4Q93070 314 aa19.22■□□□□ 0.67
VIM-209ENST00000544301 SPATC1LQ9H0A9 340 aa19.22■□□□□ 0.67
VIM-209ENST00000544301 MTRF1LQ9UGC7 380 aaKnown RBP19.22■□□□□ 0.67
VIM-209ENST00000544301 SRRM3A6NNA2 597 aaPredicted RBP19.22■□□□□ 0.67
VIM-209ENST00000544301 TTLL13PA6NNM8 815 aa19.22■□□□□ 0.67
VIM-209ENST00000544301 ECEL1O95672 775 aa19.22■□□□□ 0.67
VIM-209ENST00000544301 HARSP12081 509 aaKnown RBP19.22■□□□□ 0.67
VIM-209ENST00000544301 TBXAS1P24557 533 aaPredicted RBP19.22■□□□□ 0.67
VIM-209ENST00000544301 TCF7P36402 384 aaPredicted RBP19.22■□□□□ 0.67
VIM-209ENST00000544301 MAGOHP61326 146 aaKnown RBP19.22■□□□□ 0.67
VIM-209ENST00000544301 NOMO3P69849 1222 aa19.22■□□□□ 0.67
VIM-209ENST00000544301 NOP14P78316 857 aaKnown RBP19.22■□□□□ 0.67
VIM-209ENST00000544301 SGO2Q562F6 1265 aa19.22■□□□□ 0.67
VIM-209ENST00000544301 DENND2CQ68D51 928 aa19.22■□□□□ 0.67
VIM-209ENST00000544301 PASD1Q8IV76 773 aa19.22■□□□□ 0.67
VIM-209ENST00000544301 RBBP8NLQ8NC74 664 aaPredicted RBP19.22■□□□□ 0.67
VIM-209ENST00000544301 NLGN2Q8NFZ4 835 aa19.22■□□□□ 0.67
VIM-209ENST00000544301 PRPF31Q8WWY3 499 aaKnown RBP19.22■□□□□ 0.67
VIM-209ENST00000544301 SEPT1Q8WYJ6 367 aa19.22■□□□□ 0.67
VIM-209ENST00000544301 SLCO2A1Q92959 643 aa19.22■□□□□ 0.67
VIM-209ENST00000544301 PROSCO94903 275 aa19.21■□□□□ 0.67
VIM-209ENST00000544301 NCOA4Q13772 614 aa19.21■□□□□ 0.67
VIM-209ENST00000544301 LIN9Q5TKA1 542 aa19.21■□□□□ 0.67
VIM-209ENST00000544301 SCARA3Q6AZY7 606 aa19.21■□□□□ 0.67
VIM-209ENST00000544301 TLCD1Q96CP7 247 aa19.21■□□□□ 0.67
VIM-209ENST00000544301 DDX27Q96GQ7 796 aaKnown RBP19.21■□□□□ 0.67
VIM-209ENST00000544301 C11orf70Q9BRQ4 267 aa19.21■□□□□ 0.67
VIM-209ENST00000544301 CAND2O75155 1236 aa19.21■□□□□ 0.67
VIM-209ENST00000544301 TGFB3P10600 412 aa19.21■□□□□ 0.67
VIM-209ENST00000544301 SSTR3P32745 418 aaPredicted RBP19.21■□□□□ 0.67
VIM-209ENST00000544301 SEC24CP53992 1094 aa19.21■□□□□ 0.67
VIM-209ENST00000544301 LY6KQ17RY6 165 aa19.21■□□□□ 0.67
VIM-209ENST00000544301 METTL7BQ6UX53 244 aa19.21■□□□□ 0.67
VIM-209ENST00000544301 ZPBP2Q6X784 338 aa19.21■□□□□ 0.67
VIM-209ENST00000544301 GADL1Q6ZQY3 521 aa19.21■□□□□ 0.67
VIM-209ENST00000544301 HOOK3Q86VS8 718 aa19.21■□□□□ 0.67
VIM-209ENST00000544301 HERPUD2Q9BSE4 406 aa19.21■□□□□ 0.67
VIM-209ENST00000544301 TSPYL1Q9H0U9 437 aa19.21■□□□□ 0.67
VIM-209ENST00000544301 SEMA4AQ9H3S1 761 aa19.21■□□□□ 0.67
VIM-209ENST00000544301 ADAM22Q9P0K1 906 aa19.21■□□□□ 0.67
VIM-209ENST00000544301 SLC29A2Q14542 456 aa19.2■□□□□ 0.66
VIM-209ENST00000544301 PPP1R7Q15435 360 aa19.2■□□□□ 0.66
VIM-209ENST00000544301 EEPD1Q7L9B9 569 aa19.2■□□□□ 0.66
VIM-209ENST00000544301 NLRP14Q86W24 1093 aa19.2■□□□□ 0.66
VIM-209ENST00000544301 PHF13Q86YI8 300 aaPredicted RBP19.2■□□□□ 0.66
VIM-209ENST00000544301 BRSK2Q8IWQ3 736 aa19.2■□□□□ 0.66
VIM-209ENST00000544301 VCPIP1Q96JH7 1222 aa19.2■□□□□ 0.66
VIM-209ENST00000544301 SBDSQ9Y3A5 250 aaKnown RBP eCLIP19.2■□□□□ 0.66
VIM-209ENST00000544301 FAM169AQ9Y6X4 670 aa19.2■□□□□ 0.66
VIM-209ENST00000544301 THAP12O43422 761 aa19.19■□□□□ 0.66
VIM-209ENST00000544301 FAM189A1O60320 539 aa19.19■□□□□ 0.66
VIM-209ENST00000544301 MSCO60682 206 aa19.19■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms