RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	RPL9	P32969	192 aa	Known RBP	10.97	□□□□□ -0.65
CPSF7-221	ENST00000543545	PBX2	P40425	430 aa		10.97	□□□□□ -0.65
CPSF7-221	ENST00000543545	MARS	P56192	900 aa	Known RBP	10.97	□□□□□ -0.65
CPSF7-221	ENST00000543545	BCAR1	P56945	870 aa		10.97	□□□□□ -0.65
CPSF7-221	ENST00000543545	RBP5	P82980	135 aa		10.97	□□□□□ -0.65
CPSF7-221	ENST00000543545	PLCB2	Q00722	1185 aa		10.97	□□□□□ -0.65
CPSF7-221	ENST00000543545	SOX4	Q06945	474 aa	Predicted RBP	10.97	□□□□□ -0.65
CPSF7-221	ENST00000543545	ENPEP	Q07075	957 aa		10.97	□□□□□ -0.65
CPSF7-221	ENST00000543545	PPP3CA	Q08209	521 aa		10.97	□□□□□ -0.65
CPSF7-221	ENST00000543545	CETN1	Q12798	172 aa		10.97	□□□□□ -0.65
CPSF7-221	ENST00000543545	KCNH2	Q12809	1159 aa		10.97	□□□□□ -0.65
CPSF7-221	ENST00000543545	ZBTB6	Q15916	424 aa		10.97	□□□□□ -0.65
CPSF7-221	ENST00000543545	CDKAL1	Q5VV42	579 aa		10.97	□□□□□ -0.65
CPSF7-221	ENST00000543545	SV2A	Q7L0J3	742 aa		10.97	□□□□□ -0.65
CPSF7-221	ENST00000543545	TRAPPC11	Q7Z392	1133 aa		10.97	□□□□□ -0.65
CPSF7-221	ENST00000543545	TRIM59	Q8IWR1	403 aa		10.97	□□□□□ -0.65
CPSF7-221	ENST00000543545	COLGALT2	Q8IYK4	626 aa		10.97	□□□□□ -0.65
CPSF7-221	ENST00000543545	ZNF516	Q92618	1163 aa		10.97	□□□□□ -0.65
CPSF7-221	ENST00000543545	UROC1	Q96N76	676 aa		10.97	□□□□□ -0.65
CPSF7-221	ENST00000543545	ZNF558	Q96NG5	402 aa		10.97	□□□□□ -0.65
CPSF7-221	ENST00000543545	TMEM175	Q9BSA9	504 aa		10.97	□□□□□ -0.65
CPSF7-221	ENST00000543545	PBX4	Q9BYU1	374 aa		10.97	□□□□□ -0.65
CPSF7-221	ENST00000543545	NKX2-4	Q9H2Z4	354 aa		10.97	□□□□□ -0.65
CPSF7-221	ENST00000543545	CACNG4	Q9UBN1	327 aa		10.97	□□□□□ -0.65
CPSF7-221	ENST00000543545	DNAJB4	Q9UDY4	337 aa		10.97	□□□□□ -0.65
CPSF7-221	ENST00000543545	AGAP1	Q9UPQ3	857 aa		10.97	□□□□□ -0.65
CPSF7-221	ENST00000543545	NUB1	Q9Y5A7	615 aa		10.97	□□□□□ -0.65
CPSF7-221	ENST00000543545	PCDHB12	Q9Y5F1	795 aa		10.97	□□□□□ -0.65
CPSF7-221	ENST00000543545	MYH11	P35749	1972 aa		10.97	□□□□□ -0.65
CPSF7-221	ENST00000543545	TANC1	Q9C0D5	1861 aa		10.96	□□□□□ -0.65
CPSF7-221	ENST00000543545	PTPRJ	Q12913	1337 aa		10.96	□□□□□ -0.65
CPSF7-221	ENST00000543545		A0A1W2PPC1	479 aa		10.96	□□□□□ -0.65
CPSF7-221	ENST00000543545	NT5C1B-RDH14	C9J2C7	533 aa		10.96	□□□□□ -0.65
CPSF7-221	ENST00000543545	NRP1	O14786	923 aa		10.96	□□□□□ -0.65
CPSF7-221	ENST00000543545	N4BP1	O75113	896 aa	Known RBP	10.96	□□□□□ -0.65
CPSF7-221	ENST00000543545	TADA2A	O75478	443 aa		10.96	□□□□□ -0.65
CPSF7-221	ENST00000543545	SERPINC1	P01008	464 aa		10.96	□□□□□ -0.65
CPSF7-221	ENST00000543545	C4BPA	P04003	597 aa	Known RBP	10.96	□□□□□ -0.65
CPSF7-221	ENST00000543545	ITGB3	P05106	788 aa		10.96	□□□□□ -0.65
CPSF7-221	ENST00000543545	GALT	P07902	379 aa		10.96	□□□□□ -0.65
CPSF7-221	ENST00000543545	POLR2B	P30876	1174 aa	Known RBP	10.96	□□□□□ -0.65
CPSF7-221	ENST00000543545	CTNNB1	P35222	781 aa		10.96	□□□□□ -0.65
CPSF7-221	ENST00000543545	PBX3	P40426	434 aa		10.96	□□□□□ -0.65
CPSF7-221	ENST00000543545	PIK3CA	P42336	1068 aa		10.96	□□□□□ -0.65
CPSF7-221	ENST00000543545	SLC11A1	P49279	550 aa		10.96	□□□□□ -0.65
CPSF7-221	ENST00000543545	MXI1	P50539	228 aa		10.96	□□□□□ -0.65
CPSF7-221	ENST00000543545	CLCNKB	P51801	687 aa		10.96	□□□□□ -0.65
CPSF7-221	ENST00000543545	KRT31	Q15323	416 aa		10.96	□□□□□ -0.65
CPSF7-221	ENST00000543545	MAN2A1	Q16706	1144 aa		10.96	□□□□□ -0.65
CPSF7-221	ENST00000543545	VWA3B	Q502W6	1294 aa		10.96	□□□□□ -0.65
CPSF7-221	ENST00000543545	KRT39	Q6A163	491 aa		10.96	□□□□□ -0.65
CPSF7-221	ENST00000543545	DCLRE1A	Q6PJP8	1040 aa		10.96	□□□□□ -0.65
CPSF7-221	ENST00000543545	KCNT2	Q6UVM3	1135 aa		10.96	□□□□□ -0.65
CPSF7-221	ENST00000543545	TMEM130	Q8N3G9	435 aa		10.96	□□□□□ -0.65
CPSF7-221	ENST00000543545	C1orf127	Q8N9H9	656 aa		10.96	□□□□□ -0.65
CPSF7-221	ENST00000543545	CCDC150	Q8NCX0	1101 aa		10.96	□□□□□ -0.65
CPSF7-221	ENST00000543545	SLC35C1	Q96A29	364 aa		10.96	□□□□□ -0.65
CPSF7-221	ENST00000543545	VPS16	Q9H269	839 aa		10.96	□□□□□ -0.65
CPSF7-221	ENST00000543545	PRO3102	Q9H379	93 aa		10.96	□□□□□ -0.65
CPSF7-221	ENST00000543545	CWH43	Q9H720	699 aa		10.96	□□□□□ -0.65
CPSF7-221	ENST00000543545	SLC28A3	Q9HAS3	691 aa		10.96	□□□□□ -0.65
CPSF7-221	ENST00000543545	RC3H2	Q9HBD1	1191 aa	Known RBP	10.96	□□□□□ -0.65
CPSF7-221	ENST00000543545	TMEM8A	Q9HCN3	771 aa		10.96	□□□□□ -0.65
CPSF7-221	ENST00000543545	ITGA11	Q9UKX5	1188 aa		10.96	□□□□□ -0.65
CPSF7-221	ENST00000543545	MTUS1	Q9ULD2	1270 aa		10.96	□□□□□ -0.65
CPSF7-221	ENST00000543545	YBX2	Q9Y2T7	364 aa	Known RBP	10.96	□□□□□ -0.65
CPSF7-221	ENST00000543545	PDE4DIP	Q5VU43	2346 aa		10.95	□□□□□ -0.66
CPSF7-221	ENST00000543545	LINC01553	A4QN01	128 aa		10.95	□□□□□ -0.66
CPSF7-221	ENST00000543545	CARNS1	A5YM72	827 aa		10.95	□□□□□ -0.66
CPSF7-221	ENST00000543545	B4GALT3	O60512	393 aa		10.95	□□□□□ -0.66
CPSF7-221	ENST00000543545	ATP1A3	P13637	1013 aa		10.95	□□□□□ -0.66
CPSF7-221	ENST00000543545	ZNF18	P17022	549 aa		10.95	□□□□□ -0.66
CPSF7-221	ENST00000543545	LRPAP1	P30533	357 aa		10.95	□□□□□ -0.66
CPSF7-221	ENST00000543545	BMPR1A	P36894	532 aa		10.95	□□□□□ -0.66
CPSF7-221	ENST00000543545	FMO5	P49326	533 aa		10.95	□□□□□ -0.66
CPSF7-221	ENST00000543545	COPB1	P53618	953 aa	Known RBP	10.95	□□□□□ -0.66
CPSF7-221	ENST00000543545	CLDN10	P78369	228 aa		10.95	□□□□□ -0.66
CPSF7-221	ENST00000543545	SMAD3	P84022	425 aa	Known RBP	10.95	□□□□□ -0.66
CPSF7-221	ENST00000543545	MYL7	Q01449	175 aa		10.95	□□□□□ -0.66
CPSF7-221	ENST00000543545	DSC1	Q08554	894 aa		10.95	□□□□□ -0.66
CPSF7-221	ENST00000543545	MYO1E	Q12965	1108 aa		10.95	□□□□□ -0.66
CPSF7-221	ENST00000543545	NCOA4	Q13772	614 aa		10.95	□□□□□ -0.66
CPSF7-221	ENST00000543545	NAB2	Q15742	525 aa		10.95	□□□□□ -0.66
CPSF7-221	ENST00000543545	ZACN	Q401N2	412 aa		10.95	□□□□□ -0.66
CPSF7-221	ENST00000543545	FILIP1L	Q4L180	1135 aa		10.95	□□□□□ -0.66
CPSF7-221	ENST00000543545	WDR44	Q5JSH3	913 aa		10.95	□□□□□ -0.66
CPSF7-221	ENST00000543545	C1orf220	Q5T0J3	134 aa		10.95	□□□□□ -0.66
CPSF7-221	ENST00000543545	FKBP15	Q5T1M5	1219 aa		10.95	□□□□□ -0.66
CPSF7-221	ENST00000543545	TDRD10	Q5VZ19	366 aa	Known RBP	10.95	□□□□□ -0.66
CPSF7-221	ENST00000543545	C9orf57	Q5W0N0	161 aa		10.95	□□□□□ -0.66
CPSF7-221	ENST00000543545	PPP2R2D	Q66LE6	453 aa		10.95	□□□□□ -0.66
CPSF7-221	ENST00000543545	DSTYK	Q6XUX3	929 aa		10.95	□□□□□ -0.66
CPSF7-221	ENST00000543545	GAS2L3	Q86XJ1	694 aa		10.95	□□□□□ -0.66
CPSF7-221	ENST00000543545	COLGALT1	Q8NBJ5	622 aa		10.95	□□□□□ -0.66
CPSF7-221	ENST00000543545	SP7	Q8TDD2	431 aa	Predicted RBP	10.95	□□□□□ -0.66
CPSF7-221	ENST00000543545	HASPIN	Q8TF76	798 aa		10.95	□□□□□ -0.66
CPSF7-221	ENST00000543545	TIFA	Q96CG3	184 aa		10.95	□□□□□ -0.66
CPSF7-221	ENST00000543545	TMEM169	Q96HH4	297 aa		10.95	□□□□□ -0.66
CPSF7-221	ENST00000543545	TGS1	Q96RS0	853 aa	Known RBP	10.95	□□□□□ -0.66
CPSF7-221	ENST00000543545	PAAF1	Q9BRP4	392 aa		10.95	□□□□□ -0.66

Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms