RNA–Protein interactions for RNA: ENST00000543185.5

HDAC4-215, Transcript of histone deacetylase 4, humanhuman

TSL 5 BASIC

Gene HDAC4, Length 8,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-215ENST00000543185 KLHL25Q9H0H3 589 aa20.29■□□□□ 0.84
HDAC4-215ENST00000543185 UBAP1Q9NZ09 502 aa20.29■□□□□ 0.84
HDAC4-215ENST00000543185 ANO4Q32M45 955 aa20.29■□□□□ 0.84
HDAC4-215ENST00000543185 LRRC39Q96DD0 335 aa20.29■□□□□ 0.84
HDAC4-215ENST00000543185 CLMNQ96JQ2 1002 aa20.29■□□□□ 0.84
HDAC4-215ENST00000543185 TMEM120BA0PK00 339 aa20.29■□□□□ 0.84
HDAC4-215ENST00000543185 OTULINQ96BN8 352 aa20.29■□□□□ 0.84
HDAC4-215ENST00000543185 ZNF496Q96IT1 587 aaPredicted RBP20.29■□□□□ 0.84
HDAC4-215ENST00000543185 STK33Q9BYT3 514 aa20.29■□□□□ 0.84
HDAC4-215ENST00000543185 VSNL1P62760 191 aa20.29■□□□□ 0.84
HDAC4-215ENST00000543185 UBE3AQ05086 875 aa20.29■□□□□ 0.84
HDAC4-215ENST00000543185 PTPN12Q05209 780 aaKnown RBP20.29■□□□□ 0.84
HDAC4-215ENST00000543185 SCARA5Q6ZMJ2 495 aa20.29■□□□□ 0.84
HDAC4-215ENST00000543185 CYFIP1Q7L576 1253 aa20.29■□□□□ 0.84
HDAC4-215ENST00000543185 PLEKHG2Q9H7P9 1386 aa20.29■□□□□ 0.84
HDAC4-215ENST00000543185 ACTR2P61160 394 aa20.29■□□□□ 0.84
HDAC4-215ENST00000543185 SGSM1Q2NKQ1 1148 aa20.29■□□□□ 0.84
HDAC4-215ENST00000543185 DPP9Q86TI2 863 aa20.29■□□□□ 0.84
HDAC4-215ENST00000543185 MAGEB18Q96M61 343 aa20.29■□□□□ 0.84
HDAC4-215ENST00000543185 APOL6Q9BWW8 343 aa20.29■□□□□ 0.84
HDAC4-215ENST00000543185 BHMT2Q9H2M3 363 aa20.29■□□□□ 0.84
HDAC4-215ENST00000543185 PI4KBQ9UBF8 816 aa20.29■□□□□ 0.84
HDAC4-215ENST00000543185 A0A1W2PQJ5 194 aa20.29■□□□□ 0.84
HDAC4-215ENST00000543185 RHOBTB1O94844 696 aa20.29■□□□□ 0.84
HDAC4-215ENST00000543185 SYN2Q92777 582 aaPredicted RBP20.29■□□□□ 0.84
HDAC4-215ENST00000543185 NMRK1Q9NWW6 199 aa20.29■□□□□ 0.84
HDAC4-215ENST00000543185 SPDYE5A6NIY4 337 aa20.29■□□□□ 0.84
HDAC4-215ENST00000543185 MYO1GB0I1T2 1018 aa20.29■□□□□ 0.84
HDAC4-215ENST00000543185 SPDYE7PQ495Y7 208 aa20.29■□□□□ 0.84
HDAC4-215ENST00000543185 C17orf80Q9BSJ5 609 aa20.29■□□□□ 0.84
HDAC4-215ENST00000543185 GRID1Q9ULK0 1009 aa20.29■□□□□ 0.84
HDAC4-215ENST00000543185 CAPN1P07384 714 aa20.28■□□□□ 0.84
HDAC4-215ENST00000543185 LRRC14Q15048 493 aa20.28■□□□□ 0.84
HDAC4-215ENST00000543185 MAPK6Q16659 721 aa20.28■□□□□ 0.84
HDAC4-215ENST00000543185 NLRP4Q96MN2 994 aa20.28■□□□□ 0.84
HDAC4-215ENST00000543185 EVPLLA8MZ36 301 aa20.28■□□□□ 0.84
HDAC4-215ENST00000543185 PALM2-AKAP2B1ALY0 433 aaPredicted RBP20.28■□□□□ 0.84
HDAC4-215ENST00000543185 LLGL1Q15334 1064 aa20.28■□□□□ 0.84
HDAC4-215ENST00000543185 PFKFB3Q16875 520 aaPredicted RBP20.28■□□□□ 0.84
HDAC4-215ENST00000543185 TRPC7Q9HCX4 862 aa20.28■□□□□ 0.84
HDAC4-215ENST00000543185 CD209Q9NNX6 404 aa20.28■□□□□ 0.84
HDAC4-215ENST00000543185 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.28■□□□□ 0.842e-6■□□□□ 9.1
HDAC4-215ENST00000543185 TTC26A0AVF1 554 aa20.28■□□□□ 0.84
HDAC4-215ENST00000543185 A8MXQ7 604 aa20.28■□□□□ 0.84
HDAC4-215ENST00000543185 KCNK10P57789 538 aa20.28■□□□□ 0.84
HDAC4-215ENST00000543185 ARMC3Q5W041 872 aa20.28■□□□□ 0.84
HDAC4-215ENST00000543185 GADL1Q6ZQY3 521 aa20.28■□□□□ 0.84
HDAC4-215ENST00000543185 MAP3K4Q9Y6R4 1608 aa20.28■□□□□ 0.84
HDAC4-215ENST00000543185 NBPF26B4DH59 902 aa20.28■□□□□ 0.84
HDAC4-215ENST00000543185 CD2BP2O95400 341 aaKnown RBP20.28■□□□□ 0.84
HDAC4-215ENST00000543185 GYG1P46976 350 aa20.28■□□□□ 0.84
HDAC4-215ENST00000543185 PRELPP51888 382 aa20.28■□□□□ 0.84
HDAC4-215ENST00000543185 TRAPPC11Q7Z392 1133 aa20.28■□□□□ 0.84
HDAC4-215ENST00000543185 NBPF15Q8N660 670 aa20.28■□□□□ 0.84
HDAC4-215ENST00000543185 MTERF3Q96E29 417 aa20.28■□□□□ 0.84
HDAC4-215ENST00000543185 HEMGNQ9BXL5 484 aa20.28■□□□□ 0.84
HDAC4-215ENST00000543185 POLBP06746 335 aa20.28■□□□□ 0.84
HDAC4-215ENST00000543185 SNAP25P60880 206 aa20.28■□□□□ 0.84
HDAC4-215ENST00000543185 ARHGAP17Q68EM7 881 aa20.28■□□□□ 0.84
HDAC4-215ENST00000543185 TRMT2AQ8IZ69 625 aaKnown RBP20.28■□□□□ 0.84
HDAC4-215ENST00000543185 PDCD6IPQ8WUM4 868 aaKnown RBP20.28■□□□□ 0.84
HDAC4-215ENST00000543185 PRR23AA6NEV1 266 aa20.28■□□□□ 0.84
HDAC4-215ENST00000543185 RXRGP48443 463 aa20.28■□□□□ 0.84
HDAC4-215ENST00000543185 BEST2Q8NFU1 509 aa20.28■□□□□ 0.84
HDAC4-215ENST00000543185 PRPF4O43172 522 aaKnown RBP eCLIP20.28■□□□□ 0.842e-6■■■□□ 17.3
HDAC4-215ENST00000543185 SPRP35270 261 aaPredicted RBP20.28■□□□□ 0.84
HDAC4-215ENST00000543185 CENPCQ03188 943 aa20.28■□□□□ 0.84
HDAC4-215ENST00000543185 SNUPNO95149 360 aaKnown RBP20.28■□□□□ 0.84
HDAC4-215ENST00000543185 PKN3Q6P5Z2 889 aa20.28■□□□□ 0.84
HDAC4-215ENST00000543185 PGBD4Q96DM1 585 aa20.28■□□□□ 0.84
HDAC4-215ENST00000543185 TRAPPC9Q96Q05 1148 aa20.28■□□□□ 0.84
HDAC4-215ENST00000543185 CTNNAL1Q9UBT7 734 aa20.28■□□□□ 0.84
HDAC4-215ENST00000543185 PDE9AO76083 593 aa20.27■□□□□ 0.84
HDAC4-215ENST00000543185 CDH24Q86UP0 819 aa20.27■□□□□ 0.84
HDAC4-215ENST00000543185 STK32BQ9NY57 414 aa20.27■□□□□ 0.84
HDAC4-215ENST00000543185 NEU2Q9Y3R4 380 aa20.27■□□□□ 0.84
HDAC4-215ENST00000543185 ANKRD65E5RJM6 399 aa20.27■□□□□ 0.84
HDAC4-215ENST00000543185 ENO3P13929 434 aaPredicted RBP20.27■□□□□ 0.84
HDAC4-215ENST00000543185 SERPINH1P50454 418 aaKnown RBP20.27■□□□□ 0.84
HDAC4-215ENST00000543185 NECTIN1Q15223 517 aa20.27■□□□□ 0.84
HDAC4-215ENST00000543185 LINC00523Q86TU6 105 aa20.27■□□□□ 0.84
HDAC4-215ENST00000543185 PTPRN2Q92932 1015 aa20.27■□□□□ 0.84
HDAC4-215ENST00000543185 ZCCHC17Q9NP64 241 aaKnown RBP20.27■□□□□ 0.84
HDAC4-215ENST00000543185 AMACRQ9UHK6 382 aa20.27■□□□□ 0.84
HDAC4-215ENST00000543185 CENPXA8MT69 81 aa20.27■□□□□ 0.84
HDAC4-215ENST00000543185 ZBTB5O15062 677 aa20.27■□□□□ 0.84
HDAC4-215ENST00000543185 RGS5O15539 181 aa20.27■□□□□ 0.84
HDAC4-215ENST00000543185 IRAK1P51617 712 aa20.27■□□□□ 0.84
HDAC4-215ENST00000543185 CDH6P55285 790 aa20.27■□□□□ 0.84
HDAC4-215ENST00000543185 PTK7Q13308 1070 aa20.27■□□□□ 0.84
HDAC4-215ENST00000543185 EDC3Q96F86 508 aaKnown RBP20.27■□□□□ 0.84
HDAC4-215ENST00000543185 LRCH1Q9Y2L9 728 aa20.27■□□□□ 0.84
HDAC4-215ENST00000543185 APRTP07741 180 aa20.27■□□□□ 0.84
HDAC4-215ENST00000543185 RAD51Q06609 339 aa20.27■□□□□ 0.84
HDAC4-215ENST00000543185 TBL3Q12788 808 aaKnown RBP20.27■□□□□ 0.84
HDAC4-215ENST00000543185 SUGP1Q8IWZ8 645 aaKnown RBP20.27■□□□□ 0.84
HDAC4-215ENST00000543185 BTN2A2Q8WVV5 523 aa20.27■□□□□ 0.84
HDAC4-215ENST00000543185 FAM25AB3EWG3 89 aa20.27■□□□□ 0.84
HDAC4-215ENST00000543185 FAM25CB3EWG5 89 aa20.27■□□□□ 0.84
HDAC4-215ENST00000543185 FAM25GB3EWG6 89 aa20.27■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms