RNA–Protein interactions for RNA: ENST00000540904.1

SNHG1-215, Transcript of small nucleolar RNA host gene 1, human

TSL 5

Gene SNHG1, Length 594 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-215	ENST00000540904	FMR1NB	Q8N0W7	255 aa	Predicted RBP	10.03	□□□□□ -0.8
SNHG1-215	ENST00000540904	TMEM130	Q8N3G9	435 aa		10.03	□□□□□ -0.8
SNHG1-215	ENST00000540904	C3orf58	Q8NDZ4	430 aa		10.03	□□□□□ -0.8
SNHG1-215	ENST00000540904	ZSWIM2	Q8NEG5	633 aa		10.03	□□□□□ -0.8
SNHG1-215	ENST00000540904	ZNF507	Q8TCN5	953 aa		10.03	□□□□□ -0.8
SNHG1-215	ENST00000540904	SCFD1	Q8WVM8	642 aa		10.03	□□□□□ -0.8
SNHG1-215	ENST00000540904	RIN2	Q8WYP3	895 aa	Predicted RBP	10.03	□□□□□ -0.8
SNHG1-215	ENST00000540904	CCDC34	Q96HJ3	373 aa		10.03	□□□□□ -0.8
SNHG1-215	ENST00000540904	KLHL5	Q96PQ7	755 aa		10.03	□□□□□ -0.8
SNHG1-215	ENST00000540904	PHF12	Q96QT6	1004 aa		10.03	□□□□□ -0.8
SNHG1-215	ENST00000540904	TTPAL	Q9BTX7	342 aa		10.03	□□□□□ -0.8
SNHG1-215	ENST00000540904	CHST7	Q9NS84	486 aa		10.03	□□□□□ -0.8
SNHG1-215	ENST00000540904	CLEC1B	Q9P126	229 aa		10.03	□□□□□ -0.8
SNHG1-215	ENST00000540904	CD207	Q9UJ71	328 aa		10.03	□□□□□ -0.8
SNHG1-215	ENST00000540904	SSX2IP	Q9Y2D8	614 aa		10.03	□□□□□ -0.8
SNHG1-215	ENST00000540904	HCFC2	Q9Y5Z7	792 aa		10.03	□□□□□ -0.8
SNHG1-215	ENST00000540904		I3L4J1	428 aa		10.02	□□□□□ -0.81
SNHG1-215	ENST00000540904	TEX28	O15482	410 aa		10.02	□□□□□ -0.81
SNHG1-215	ENST00000540904	XPOT	O43592	962 aa	Known RBP	10.02	□□□□□ -0.81
SNHG1-215	ENST00000540904	TRAPPC3	O43617	180 aa		10.02	□□□□□ -0.81
SNHG1-215	ENST00000540904	EXTL3	O43909	919 aa		10.02	□□□□□ -0.81
SNHG1-215	ENST00000540904	LDHA	P00338	332 aa	Known RBP	10.02	□□□□□ -0.81
SNHG1-215	ENST00000540904	ADRB2	P07550	413 aa		10.02	□□□□□ -0.81
SNHG1-215	ENST00000540904	BRCC3	P46736	316 aa		10.02	□□□□□ -0.81
SNHG1-215	ENST00000540904	GUCY2F	P51841	1108 aa		10.02	□□□□□ -0.81
SNHG1-215	ENST00000540904	FAM160A1	Q05DH4	1040 aa		10.02	□□□□□ -0.81
SNHG1-215	ENST00000540904	DPYD	Q12882	1025 aa		10.02	□□□□□ -0.81
SNHG1-215	ENST00000540904	STK4	Q13043	487 aa		10.02	□□□□□ -0.81
SNHG1-215	ENST00000540904	KCNC3	Q14003	757 aa		10.02	□□□□□ -0.81
SNHG1-215	ENST00000540904	TMEM132D	Q14C87	1099 aa		10.02	□□□□□ -0.81
SNHG1-215	ENST00000540904	ZBTB6	Q15916	424 aa		10.02	□□□□□ -0.81
SNHG1-215	ENST00000540904	KNOP1	Q1ED39	458 aa	Known RBP	10.02	□□□□□ -0.81
SNHG1-215	ENST00000540904	RTP2	Q5QGT7	225 aa		10.02	□□□□□ -0.81
SNHG1-215	ENST00000540904	KANK3	Q6NY19	840 aa		10.02	□□□□□ -0.81
SNHG1-215	ENST00000540904	PRSS55	Q6UWB4	352 aa	Predicted RBP	10.02	□□□□□ -0.81
SNHG1-215	ENST00000540904	CD300LG	Q6UXG3	332 aa		10.02	□□□□□ -0.81
SNHG1-215	ENST00000540904	TMEM184A	Q6ZMB5	413 aa		10.02	□□□□□ -0.81
SNHG1-215	ENST00000540904	PPFIBP1	Q86W92	1011 aa		10.02	□□□□□ -0.81
SNHG1-215	ENST00000540904	GLYCTK	Q8IVS8	523 aa		10.02	□□□□□ -0.81
SNHG1-215	ENST00000540904	CD302	Q8IX05	232 aa		10.02	□□□□□ -0.81
SNHG1-215	ENST00000540904	KIAA0895	Q8NCT3	520 aa		10.02	□□□□□ -0.81
SNHG1-215	ENST00000540904	BEST2	Q8NFU1	509 aa		10.02	□□□□□ -0.81
SNHG1-215	ENST00000540904	ADAMTS19	Q8TE59	1207 aa		10.02	□□□□□ -0.81
SNHG1-215	ENST00000540904	CASP10	Q92851	521 aa		10.02	□□□□□ -0.81
SNHG1-215	ENST00000540904	CCDC47	Q96A33	483 aa	Known RBP	10.02	□□□□□ -0.81
SNHG1-215	ENST00000540904	MSLNL	Q96KJ4	702 aa		10.02	□□□□□ -0.81
SNHG1-215	ENST00000540904	APOL5	Q9BWW9	433 aa		10.02	□□□□□ -0.81
SNHG1-215	ENST00000540904	ASB7	Q9H672	318 aa		10.02	□□□□□ -0.81
SNHG1-215	ENST00000540904	PLSCR2	Q9NRY7	297 aa		10.02	□□□□□ -0.81
SNHG1-215	ENST00000540904	AGPAT3	Q9NRZ7	376 aa		10.02	□□□□□ -0.81
SNHG1-215	ENST00000540904	RBAK	Q9NYW8	714 aa	Predicted RBP	10.02	□□□□□ -0.81
SNHG1-215	ENST00000540904	UBQLN1	Q9UMX0	589 aa	Known RBP	10.02	□□□□□ -0.81
SNHG1-215	ENST00000540904	NUB1	Q9Y5A7	615 aa		10.02	□□□□□ -0.81
SNHG1-215	ENST00000540904	UBE4B	O95155	1302 aa		10.02	□□□□□ -0.81
SNHG1-215	ENST00000540904	UNC80	Q8N2C7	3258 aa		10.02	□□□□□ -0.81
SNHG1-215	ENST00000540904	XIRP2	A4UGR9	3374 aa		10.01	□□□□□ -0.81
SNHG1-215	ENST00000540904	GRXCR2	A6NFK2	248 aa		10.01	□□□□□ -0.81
SNHG1-215	ENST00000540904	CLIC2	O15247	247 aa		10.01	□□□□□ -0.81
SNHG1-215	ENST00000540904	TGFB1I1	O43294	461 aa		10.01	□□□□□ -0.81
SNHG1-215	ENST00000540904	IL18RAP	O95256	599 aa		10.01	□□□□□ -0.81
SNHG1-215	ENST00000540904	ADH1A	P07327	375 aa		10.01	□□□□□ -0.81
SNHG1-215	ENST00000540904	IL9	P15248	144 aa		10.01	□□□□□ -0.81
SNHG1-215	ENST00000540904	EPCAM	P16422	314 aa		10.01	□□□□□ -0.81
SNHG1-215	ENST00000540904	RPL17	P18621	184 aa	Known RBP	10.01	□□□□□ -0.81
SNHG1-215	ENST00000540904	CYP3A5	P20815	502 aa		10.01	□□□□□ -0.81
SNHG1-215	ENST00000540904	TKT	P29401	623 aa	Known RBP	10.01	□□□□□ -0.81
SNHG1-215	ENST00000540904	LRPAP1	P30533	357 aa		10.01	□□□□□ -0.81
SNHG1-215	ENST00000540904	MCM4	P33991	863 aa		10.01	□□□□□ -0.81
SNHG1-215	ENST00000540904	CYP2J2	P51589	502 aa		10.01	□□□□□ -0.81
SNHG1-215	ENST00000540904	CLCN4	P51793	760 aa		10.01	□□□□□ -0.81
SNHG1-215	ENST00000540904	POU5F1	Q01860	360 aa	Known RBP	10.01	□□□□□ -0.81
SNHG1-215	ENST00000540904	PSMD2	Q13200	908 aa		10.01	□□□□□ -0.81
SNHG1-215	ENST00000540904	SNW1	Q13573	536 aa	Known RBP	10.01	□□□□□ -0.81
SNHG1-215	ENST00000540904	BMT2	Q1RMZ1	405 aa		10.01	□□□□□ -0.81
SNHG1-215	ENST00000540904	PUS10	Q3MIT2	529 aa	Known RBP	10.01	□□□□□ -0.81
SNHG1-215	ENST00000540904	SPATA1	Q5VX52	437 aa		10.01	□□□□□ -0.81
SNHG1-215	ENST00000540904	ANKRD54	Q6NXT1	300 aa		10.01	□□□□□ -0.81
SNHG1-215	ENST00000540904	PDZRN4	Q6ZMN7	1036 aa	Predicted RBP	10.01	□□□□□ -0.81
SNHG1-215	ENST00000540904	HS2ST1	Q7LGA3	356 aa		10.01	□□□□□ -0.81
SNHG1-215	ENST00000540904	PALB2	Q86YC2	1186 aa		10.01	□□□□□ -0.81
SNHG1-215	ENST00000540904	GPD1L	Q8N335	351 aa		10.01	□□□□□ -0.81
SNHG1-215	ENST00000540904	SMRP1	Q8NCR6	262 aa		10.01	□□□□□ -0.81
SNHG1-215	ENST00000540904	ENGASE	Q8NFI3	743 aa		10.01	□□□□□ -0.81
SNHG1-215	ENST00000540904	SLC22A17	Q8WUG5	538 aa		10.01	□□□□□ -0.81
SNHG1-215	ENST00000540904	PIK3R5	Q8WYR1	880 aa		10.01	□□□□□ -0.81
SNHG1-215	ENST00000540904	NECAB3	Q96P71	396 aa	Predicted RBP	10.01	□□□□□ -0.81
SNHG1-215	ENST00000540904	TSPAN18	Q96SJ8	248 aa		10.01	□□□□□ -0.81
SNHG1-215	ENST00000540904	COL25A1	Q9BXS0	654 aa	Predicted RBP	10.01	□□□□□ -0.81
SNHG1-215	ENST00000540904	RXFP1	Q9HBX9	757 aa		10.01	□□□□□ -0.81
SNHG1-215	ENST00000540904	APOBEC3C	Q9NRW3	190 aa	Known RBP eCLIP	10.01	□□□□□ -0.81
SNHG1-215	ENST00000540904	HSPBP1	Q9NZL4	362 aa		10.01	□□□□□ -0.81
SNHG1-215	ENST00000540904	FAM50B	Q9Y247	325 aa		10.01	□□□□□ -0.81
SNHG1-215	ENST00000540904	DERA	Q9Y315	318 aa		10.01	□□□□□ -0.81
SNHG1-215	ENST00000540904	GTF3C5	Q9Y5Q8	519 aa	Predicted RBP	10.01	□□□□□ -0.81
SNHG1-215	ENST00000540904	ATG2A	Q2TAZ0	1938 aa		10.01	□□□□□ -0.81
SNHG1-215	ENST00000540904	TDRD15	B5MCY1	1934 aa	Known RBP	10	□□□□□ -0.81
SNHG1-215	ENST00000540904	ZNF233	A6NK53	670 aa		10	□□□□□ -0.81
SNHG1-215	ENST00000540904	KIAA0391	O15091	583 aa	Known RBP	10	□□□□□ -0.81
SNHG1-215	ENST00000540904	MBTPS2	O43462	519 aa		10	□□□□□ -0.81
SNHG1-215	ENST00000540904	GADD45B	O75293	160 aa	Predicted RBP	10	□□□□□ -0.81

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