RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 ZNF224Q9NZL3 707 aa9.19□□□□□ -0.94
YBX3-208ENST00000540447 A0A1W2PQ72 361 aa9.19□□□□□ -0.94
YBX3-208ENST00000540447 EFCAB14O75071 495 aa9.19□□□□□ -0.94
YBX3-208ENST00000540447 CYP21A2P08686 494 aa9.19□□□□□ -0.94
YBX3-208ENST00000540447 SLC9A1P19634 815 aa9.19□□□□□ -0.94
YBX3-208ENST00000540447 YWHABP31946 246 aaKnown RBP9.19□□□□□ -0.94
YBX3-208ENST00000540447 RAD23AP54725 363 aa9.19□□□□□ -0.94
YBX3-208ENST00000540447 MEI1Q5TIA1 1274 aa9.19□□□□□ -0.94
YBX3-208ENST00000540447 TRIQKQ629K1 86 aa9.19□□□□□ -0.94
YBX3-208ENST00000540447 BNC2Q6ZN30 1099 aaPredicted RBP9.19□□□□□ -0.94
YBX3-208ENST00000540447 TMC4Q7Z404 712 aa9.19□□□□□ -0.94
YBX3-208ENST00000540447 CDC26Q8NHZ8 85 aa9.19□□□□□ -0.94
YBX3-208ENST00000540447 DHX38Q92620 1227 aaKnown RBP9.19□□□□□ -0.94
YBX3-208ENST00000540447 XAGE2Q96GT9 111 aa9.19□□□□□ -0.94
YBX3-208ENST00000540447 MYLK2Q9H1R3 596 aa9.19□□□□□ -0.94
YBX3-208ENST00000540447 DNAJC12Q9UKB3 198 aa9.19□□□□□ -0.94
YBX3-208ENST00000540447 MYL2P10916 166 aa9.19□□□□□ -0.94
YBX3-208ENST00000540447 TRIP4Q15650 581 aaPredicted RBP9.19□□□□□ -0.94
YBX3-208ENST00000540447 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP9.19□□□□□ -0.94
YBX3-208ENST00000540447 TSPAN14Q8NG11 270 aa9.19□□□□□ -0.94
YBX3-208ENST00000540447 NAT14Q8WUY8 206 aa9.19□□□□□ -0.94
YBX3-208ENST00000540447 S100ZQ8WXG8 99 aa9.19□□□□□ -0.94
YBX3-208ENST00000540447 VPS39Q96JC1 886 aa9.19□□□□□ -0.94
YBX3-208ENST00000540447 TBATAQ96M53 351 aa9.19□□□□□ -0.94
YBX3-208ENST00000540447 CELF4Q9BZC1 486 aaKnown RBP9.19□□□□□ -0.94
YBX3-208ENST00000540447 SRRM3A6NNA2 597 aaPredicted RBP9.18□□□□□ -0.94
YBX3-208ENST00000540447 MYO1GB0I1T2 1018 aa9.18□□□□□ -0.94
YBX3-208ENST00000540447 POTECB2RU33 542 aa9.18□□□□□ -0.94
YBX3-208ENST00000540447 EYA2O00167 538 aa9.18□□□□□ -0.94
YBX3-208ENST00000540447 CLIC2O15247 247 aa9.18□□□□□ -0.94
YBX3-208ENST00000540447 CASP1P29466 404 aa9.18□□□□□ -0.94
YBX3-208ENST00000540447 LLGL2Q6P1M3 1020 aa9.18□□□□□ -0.94
YBX3-208ENST00000540447 RHPN2Q8IUC4 686 aa9.18□□□□□ -0.94
YBX3-208ENST00000540447 ATL2Q8NHH9 583 aa9.18□□□□□ -0.94
YBX3-208ENST00000540447 KCTD4Q8WVF5 259 aa9.18□□□□□ -0.94
YBX3-208ENST00000540447 GCOM2Q9BZD3 368 aaPredicted RBP9.18□□□□□ -0.94
YBX3-208ENST00000540447 TUFT1Q9NNX1 390 aa9.18□□□□□ -0.94
YBX3-208ENST00000540447 ABCB10Q9NRK6 738 aa9.18□□□□□ -0.94
YBX3-208ENST00000540447 WBP11Q9Y2W2 641 aaKnown RBP9.18□□□□□ -0.94
YBX3-208ENST00000540447 RIMS2Q9UQ26 1411 aa9.18□□□□□ -0.94
YBX3-208ENST00000540447 ZNF23P17027 643 aa9.18□□□□□ -0.94
YBX3-208ENST00000540447 PTPREP23469 700 aa9.18□□□□□ -0.94
YBX3-208ENST00000540447 PSMB9P28065 219 aa9.18□□□□□ -0.94
YBX3-208ENST00000540447 NR5A1Q13285 461 aa9.18□□□□□ -0.94
YBX3-208ENST00000540447 ZNF579Q8NAF0 562 aaKnown RBP9.18□□□□□ -0.94
YBX3-208ENST00000540447 KCNH5Q8NCM2 988 aa9.18□□□□□ -0.94
YBX3-208ENST00000540447 RFFLQ8WZ73 363 aa9.18□□□□□ -0.94
YBX3-208ENST00000540447 SLC13A4Q9UKG4 626 aa9.18□□□□□ -0.94
YBX3-208ENST00000540447 COQ6Q9Y2Z9 468 aa9.18□□□□□ -0.94
YBX3-208ENST00000540447 MED23Q9ULK4 1368 aa9.18□□□□□ -0.94
YBX3-208ENST00000540447 DDX39AO00148 427 aaKnown RBP9.18□□□□□ -0.94
YBX3-208ENST00000540447 DDX5P17844 614 aaKnown RBP9.18□□□□□ -0.94
YBX3-208ENST00000540447 CHI3L2Q15782 390 aa9.18□□□□□ -0.94
YBX3-208ENST00000540447 ZFP69Q49AA0 526 aa9.18□□□□□ -0.94
YBX3-208ENST00000540447 GRPEL2Q8TAA5 225 aa9.18□□□□□ -0.94
YBX3-208ENST00000540447 RSPH1Q8WYR4 309 aa9.18□□□□□ -0.94
YBX3-208ENST00000540447 TMEM120AQ9BXJ8 343 aa9.18□□□□□ -0.94
YBX3-208ENST00000540447 CNOT8Q9UFF9 292 aaKnown RBP9.18□□□□□ -0.94
YBX3-208ENST00000540447 ZNF221Q9UK13 617 aa9.18□□□□□ -0.94
YBX3-208ENST00000540447 CDYLQ9Y232 598 aa9.18□□□□□ -0.94
YBX3-208ENST00000540447 FGD5Q6ZNL6 1462 aa9.18□□□□□ -0.94
YBX3-208ENST00000540447 RPAP1Q9BWH6 1393 aaPredicted RBP9.18□□□□□ -0.94
YBX3-208ENST00000540447 TLR3O15455 904 aaKnown RBP9.18□□□□□ -0.94
YBX3-208ENST00000540447 EPN2O95208 641 aa9.18□□□□□ -0.94
YBX3-208ENST00000540447 SMU1Q2TAY7 513 aa9.18□□□□□ -0.94
YBX3-208ENST00000540447 PRUNE1Q86TP1 453 aa9.18□□□□□ -0.94
YBX3-208ENST00000540447 CDAN1Q8IWY9 1227 aa9.18□□□□□ -0.94
YBX3-208ENST00000540447 SPATA5Q8NB90 893 aa9.18□□□□□ -0.94
YBX3-208ENST00000540447 ZNF564Q8TBZ8 553 aaPredicted RBP9.18□□□□□ -0.94
YBX3-208ENST00000540447 TRPC4APQ8TEL6 797 aa9.18□□□□□ -0.94
YBX3-208ENST00000540447 SIPA1Q96FS4 1042 aa9.18□□□□□ -0.94
YBX3-208ENST00000540447 ECSITQ9BQ95 431 aa9.18□□□□□ -0.94
YBX3-208ENST00000540447 MKNK1Q9BUB5 465 aa9.18□□□□□ -0.94
YBX3-208ENST00000540447 EML4Q9HC35 981 aaKnown RBP9.18□□□□□ -0.94
YBX3-208ENST00000540447 EMILIN3Q9NT22 766 aa9.18□□□□□ -0.94
YBX3-208ENST00000540447 TMOD3Q9NYL9 352 aa9.18□□□□□ -0.94
YBX3-208ENST00000540447 CTNNAL1Q9UBT7 734 aa9.18□□□□□ -0.94
YBX3-208ENST00000540447 BAIAP2Q9UQB8 552 aa9.18□□□□□ -0.94
YBX3-208ENST00000540447 FAM196BA6NMK8 535 aa9.18□□□□□ -0.94
YBX3-208ENST00000540447 WFS1O76024 890 aa9.18□□□□□ -0.94
YBX3-208ENST00000540447 ARSEP51690 589 aa9.18□□□□□ -0.94
YBX3-208ENST00000540447 LIN52Q52LA3 116 aa9.18□□□□□ -0.94
YBX3-208ENST00000540447 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.18□□□□□ -0.94
YBX3-208ENST00000540447 ELOA2Q8IYF1 753 aaPredicted RBP9.18□□□□□ -0.94
YBX3-208ENST00000540447 ZFYVE1Q9HBF4 777 aa9.18□□□□□ -0.94
YBX3-208ENST00000540447 PREBQ9HCU5 417 aa9.18□□□□□ -0.94
YBX3-208ENST00000540447 PRG3Q9Y2Y8 225 aaPredicted RBP9.18□□□□□ -0.94
YBX3-208ENST00000540447 SNAPC4Q5SXM2 1469 aa9.17□□□□□ -0.94
YBX3-208ENST00000540447 PIPSLA2A3N6 862 aa9.17□□□□□ -0.94
YBX3-208ENST00000540447 CCNKO75909 580 aa9.17□□□□□ -0.94
YBX3-208ENST00000540447 IL12AP29459 219 aa9.17□□□□□ -0.94
YBX3-208ENST00000540447 CSE1LP55060 971 aaKnown RBP9.17□□□□□ -0.94
YBX3-208ENST00000540447 PPP4R4Q6NUP7 873 aa9.17□□□□□ -0.94
YBX3-208ENST00000540447 TAF2Q6P1X5 1199 aa9.17□□□□□ -0.94
YBX3-208ENST00000540447 SPICE1Q8N0Z3 855 aa9.17□□□□□ -0.94
YBX3-208ENST00000540447 SYTL5Q8TDW5 730 aaPredicted RBP9.17□□□□□ -0.94
YBX3-208ENST00000540447 TATDN2Q93075 761 aa9.17□□□□□ -0.94
YBX3-208ENST00000540447 TUBGCP5Q96RT8 1024 aa9.17□□□□□ -0.94
YBX3-208ENST00000540447 ZNF532Q9HCE3 1301 aa9.17□□□□□ -0.94
YBX3-208ENST00000540447 ZNF806P0C7X5 589 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms